Homology Contig-U11872-1 vs DNA
Query= Contig-U11872-1 (Contig-U11872-1Q) /CSM_Contig/Contig-U11872-1Q.Seq.d
(1334 letters)
Database: ddbj_A
108,600,042 sequences; 106,710,029,556 total letters
Searching..................................................done
Score E
Sequences producing significant alignments: (bits) Value N
(BJ384393) Dictyostelium discoideum cDNA clone:ddc49e09, 3' ... 1269 0.0 4
(BJ444198) Dictyostelium discoideum cDNA clone:ddv55h13, 3' ... 1203 0.0 2
(BJ425395) Dictyostelium discoideum cDNA clone:ddv55h13, 5' ... 573 0.0 2
(BJ369094) Dictyostelium discoideum cDNA clone:ddc49e09, 5' ... 319 5e-87 2
(EH783171) CNSS22400.b1_P07.ab1 CNS(LMS) yellow starthistle ... 52 0.059 1
(EH780893) CNSS19731.b1_F13.ab1 CNS(LMS) yellow starthistle ... 52 0.059 1
(EH778885) CNSS17714.b1_C13.ab1 CNS(LMS) yellow starthistle ... 52 0.059 1
(AC163335) Mus musculus chromosome 7, clone RP24-149G13, com... 50 0.23 1
(AC158345) Mus musculus chromosome 7, clone RP23-271M19, com... 50 0.23 1
(AC163005) Callicebus moloch clone LB5-96I1, WORKING DRAFT S... 38 0.51 2
(BX510923) Zebrafish DNA sequence from clone CH211-214J8 in ... 48 0.92 1
(AC099519) Homo sapiens chromosome 5 clone RP11-695O10, comp... 48 0.92 1
(AC099504) Homo sapiens chromosome 5 clone RP11-219L6, compl... 48 0.92 1
(AC008809) Homo sapiens chromosome 5 clone CTD-2093D7, compl... 48 0.92 1
(AC027027) Homo sapiens chromosome 5 clone RP11-695O10 map 5... 48 0.92 1
(AQ475401) CITBI-E1-2592G21.TF CITBI-E1 Homo sapiens genomic... 48 0.92 1
(EK003655) 1093139003437 Global-Ocean-Sampling_GS-30-02-01-1... 48 0.92 1
(EJ949794) 1093018937028 Global-Ocean-Sampling_GS-30-02-01-1... 48 0.92 1
(EJ883144) 1093018405489 Global-Ocean-Sampling_GS-30-02-01-1... 48 0.92 1
(EJ858990) 1093017962282 Global-Ocean-Sampling_GS-30-02-01-1... 48 0.92 1
(EJ847140) 1093017860360 Global-Ocean-Sampling_GS-30-02-01-1... 48 0.92 1
(EJ779453) 1093011941786 Global-Ocean-Sampling_GS-30-02-01-1... 48 0.92 1
(EJ759551) 1092963114846 Global-Ocean-Sampling_GS-30-02-01-1... 48 0.92 1
(EJ685983) 1092955177981 Global-Ocean-Sampling_GS-30-02-01-1... 48 0.92 1
(EJ677409) 1092955096814 Global-Ocean-Sampling_GS-30-02-01-1... 48 0.92 1
(EJ461318) 1093018551480 Global-Ocean-Sampling_GS-28-01-01-1... 48 0.92 1
(AI967616) Ljirnpest07-556-b3 Ljirnp Lambda HybriZap two-hyb... 48 0.92 1
(CP001357) Brachyspira hyodysenteriae WA1, complete genome. 48 0.92 1
(CP000923) Thermoanaerobacter sp. X514, complete genome. 48 0.92 1
(AE017308) Mycoplasma mobile 163K complete genome. 36 1.9 13
(EG627124) EMBRYOF088229J20 POSSUM_01-POSSUM-C-EMBRYO-2KB Tr... 38 2.2 3
(AF200386) Ceratosolen corneri cytochrome oxidase subunit I ... 38 2.4 2
(AM642353) Entamoeba dispar GSS, clone dispar92h09.p1k. 36 2.7 3
(AC078804) Homo sapiens chromosome 3 clone RP11-489M17, WORK... 40 3.5 5
(BX942837) Zebrafish DNA sequence from clone CH211-224B23 in... 46 3.6 1
(CU693175) Synthetic construct Homo sapiens gateway clone IM... 46 3.6 1
(AC123573) Medicago truncatula clone mth2-5n3, complete sequ... 46 3.6 1
(EF017203) Chlamys farreri clone CFFD196 microsatellite sequ... 46 3.6 1
(AC106531) Rattus norvegicus clone CH230-187L13, *** SEQUENC... 46 3.6 1
(AC099288) Rattus norvegicus clone CH230-206O7, *** SEQUENCI... 46 3.6 1
(AC096172) Rattus norvegicus clone CH230-11I9, *** SEQUENCIN... 46 3.6 1
(EJ379345) 1092963755688 Global-Ocean-Sampling_GS-28-01-01-1... 46 3.6 1
(BB928725) Trifolium pratense cDNA clone:RCE39986. 46 3.6 1
(BB927703) Trifolium pratense cDNA clone:RCE38814. 46 3.6 1
(BB925500) Trifolium pratense cDNA clone:RCE34319. 46 3.6 1
(BB925383) Trifolium pratense cDNA clone:RCE34183. 46 3.6 1
(BB924369) Trifolium pratense cDNA clone:RCE33059. 46 3.6 1
(GR406948) JG11_CAAC_F63TF JG11 Salinity-stressed chickpea r... 46 3.6 1
(FG932934) UCRVU09_CCNT12203_g1 Cowpea UCR 707 Mixed Tissue ... 46 3.6 1
(FG932933) UCRVU09_CCNT12203_b1 Cowpea UCR 707 Mixed Tissue ... 46 3.6 1
(FG912104) UCRVU08_CCNS8129_g1 Cowpea IT97K-461-4 Mixed Tiss... 46 3.6 1
(FG912103) UCRVU08_CCNS8129_b1 Cowpea IT97K-461-4 Mixed Tiss... 46 3.6 1
(FG867235) UCRVU07_CCNP4432_g1 Cowpea UCR 779 Mixed Tissue a... 46 3.6 1
(FG867234) UCRVU07_CCNP4432_b1 Cowpea UCR 779 Mixed Tissue a... 46 3.6 1
(FG834597) UCRVU04_CCNI16610_g1 Cowpea 524B Mixed Tissue and... 46 3.6 1
(FG834596) UCRVU04_CCNI16610_b1 Cowpea 524B Mixed Tissue and... 46 3.6 1
(FG825957) UCRVU04_CCNI9046_g1 Cowpea 524B Mixed Tissue and ... 46 3.6 1
(FF546438) MOPDW44TF MOP Vigna unguiculata cDNA 5', mRNA seq... 46 3.6 1
(FF537262) MOPA405TF MOP Vigna unguiculata cDNA 5', mRNA seq... 46 3.6 1
(FF392686) MOOCW41TF MOO Vigna unguiculata cDNA 5', mRNA seq... 46 3.6 1
(FF388806) MOOC456TF MOO Vigna unguiculata cDNA 5', mRNA seq... 46 3.6 1
(AC174299) Medicago truncatula clone mth2-80e19, complete se... 38 3.8 6
(AM430731) Vitis vinifera contig VV78X002660.13, whole genom... 38 4.9 2
(Z79753) Caenorhabditis elegans Cosmid F20G2. 44 6.1 3
(BW932783) Branchiostoma floridae cDNA, neurula clone:bfne11... 32 6.7 3
(CC091998) CSU-K34.105A5.SP6 CSU-K34 Aedes aegypti genomic c... 32 6.7 3
(AM464700) Vitis vinifera contig VV78X076725.3, whole genome... 38 8.5 2
(CL801627) OR_CBa0013K04.f OR_CBa Oryza rufipogon genomic cl... 38 8.9 3
(FH716169) CHO_OF5050xn12r1.ab1 CHO_OF5 Nicotiana tabacum ge... 34 9.1 2
(BY892962) Cryptomeria japonica cDNA clone: CMFL042_E14, 5'e... 32 9.2 2
>(BJ384393) Dictyostelium discoideum cDNA clone:ddc49e09, 3' end,
single read.
Length = 759
Score = 1269 bits (640), Expect(4) = 0.0
Identities = 640/640 (100%)
Strand = Plus / Minus
Query: 561 tgtgcattacatgtaaaatcgggaaaggaaattagacattcttacgactttgcactcgat 620
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 759 tgtgcattacatgtaaaatcgggaaaggaaattagacattcttacgactttgcactcgat 700
Query: 621 gaagcagaatcattaagaagaaatagattacgtcaagaaaagaataaacccccagtggta 680
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 699 gaagcagaatcattaagaagaaatagattacgtcaagaaaagaataaacccccagtggta 640
Query: 681 caactttgcctcatgatggattgcactggtagtatgggctcatggattaaagaaagtaaa 740
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 639 caactttgcctcatgatggattgcactggtagtatgggctcatggattaaagaaagtaaa 580
Query: 741 gaaaaaattatttcattaactggattattagccagctcatatgtaggtttggaattgaat 800
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 579 gaaaaaattatttcattaactggattattagccagctcatatgtaggtttggaattgaat 520
Query: 801 gcaagtttcataggttatcgtgatattactgattccaatagatttgaggttgtaccattt 860
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 519 gcaagtttcataggttatcgtgatattactgattccaatagatttgaggttgtaccattt 460
Query: 861 acaacggatatgggatatcttgcttccaaaattaatgaagcagttccaacaggtggtggt 920
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 459 acaacggatatgggatatcttgcttccaaaattaatgaagcagttccaacaggtggtggt 400
Query: 921 gatactccagaagatattacaggtgcttttttacaagtaaataacctatcgtggaaacca 980
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 399 gatactccagaagatattacaggtgcttttttacaagtaaataacctatcgtggaaacca 340
Query: 981 actcatactaaacttgttgtccatgtaggcgatgcaccatgccacggcaaaaaatatcat 1040
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 339 actcatactaaacttgttgtccatgtaggcgatgcaccatgccacggcaaaaaatatcat 280
Query: 1041 aattgtgttgattcatatccagatggtgacccaagtggtttggttccagaaaaactttta 1100
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 279 aattgtgttgattcatatccagatggtgacccaagtggtttggttccagaaaaactttta 220
Query: 1101 caaaaattatcttcaaaatcaattgactattatttcattaaaatcacatctcaaactgat 1160
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 219 caaaaattatcttcaaaatcaattgactattatttcattaaaatcacatctcaaactgat 160
Query: 1161 aagatgattgaaatttttagaaagtcatatgactcacctc 1200
||||||||||||||||||||||||||||||||||||||||
Sbjct: 159 aagatgattgaaatttttagaaagtcatatgactcacctc 120
Score = 71.9 bits (36), Expect(4) = 0.0
Identities = 36/36 (100%)
Strand = Plus / Minus
Query: 1226 tggatcagatgtctcaaaattattaccttctttagt 1261
||||||||||||||||||||||||||||||||||||
Sbjct: 95 tggatcagatgtctcaaaattattaccttctttagt 60
Score = 36.2 bits (18), Expect(4) = 0.0
Identities = 18/18 (100%)
Strand = Plus / Minus
Query: 1208 gattgtagttcatgacct 1225
||||||||||||||||||
Sbjct: 112 gattgtagttcatgacct 95
Score = 28.2 bits (14), Expect(4) = 0.0
Identities = 14/14 (100%)
Strand = Plus / Minus
Query: 1281 attaccagatttac 1294
||||||||||||||
Sbjct: 43 attaccagatttac 30
Lambda K H
1.37 0.711 1.31
Matrix: blastn matrix:1 -3
Number of Sequences: 108600042
Number of Hits to DB: 1,541,526,554
Number of extensions: 91176585
Number of successful extensions: 7118282
Number of sequences better than 10.0: 71
Length of query: 1334
Length of database: 106,710,029,556
Length adjustment: 24
Effective length of query: 1310
Effective length of database: 104,103,628,548
Effective search space: 136375753397880
Effective search space used: 136375753397880
X1: 11 (21.8 bits)
S2: 22 (44.1 bits)
Dictyostelium discoideum cDNA Project Home