Dictyostelium discoideum cDNA Contig-U11867-1

Assembled

Chromosomal Location of Contig-U11867-1

Sequence Contig-U11867-1

AACACAAATA TTTGTTTTAT TTATTCAAAT ACTATTTATT TAATTTAAAA
AGAAGGCATA GATTCCTTTT AAAATCTCAA TAGTTTTTAT TATTATTATC
ACCATTATTA TTTTATATTA GAATAATAGT TAATTGTAGA TTAGTTTTTT
TTTTTTTTTT TTNAAAAAAA A--------- -AATTTAGTA TAAATAAAAC
AAAAATAAAT TTTTTTTTTT TTAAAAAATA ATAATAATTT TTTAAAAATG
ATGGCAAAAC CAAATGGTAA AATTCAATTC AAGAATTTAC AAAGTCATGG
AGTATTAGCG GATCCAGATT TTCCAAAGAG AACGTGGAAA TTATTAAAGA
CAGCAATGAG ACAAATTCAT CAACAAAATG CAAGTAATCT CTCATTTGAA
GAGTTGTATA GAAACGGATA CAATATGGTA TTACAAAAAC ATGGTGATTT
ATTATACAAT AATCTAAAGA AGATGGTCGA TAAACATTTG AAAGCGGTTG
CTAAAACTGT ATCAGAATCA ATCGATGAAA AGTTTCTACT AGAATTAAAC
TCGAGTTGGA TCAATCACAA GACTTCAATG TTAATGATTA GAGATATCTT
GATGTATATG GATAGAAACT ATGTTAAACA AAATAATCTC TCTAGTGTTT
TTGATCTTGG ACTTTACCTT TTCAGAGATA ATGTGGCTCA TTGTTCAACA
ATTAAAGATA GATTATTAAA TACTCTCTTA TCAATGGTAC AAAAAGAAAG
AGAAGGTGAA GTTATTGATA GAATTTTAAT AAAAAATATA GTTCAAATGT
TAATTGATTT AGGAGTTAAT TCTAAAAATG TATATATTGA AGACTTTGAA
AAACCATTGT TATTAAAGAC ATCATCACAT TATCAAGCAC AATCACAAAC
TCTCATTCAA ACATGTAGTT GTCCAGATTA TATGAAAAAG GTTGAAATTT
GCTTAAAAGA AGAGTTGGAA AGAGTTTCAC ATTATTTAGA TAGTAGTTCT
GAACCAAAAT TAAAAGAAGT TTGTGAAAAA CAATTAATTT CAAATCATAT
GAGAACTTTA ATTGATATGG AAAACTCTGG TTTAATTTCA ATGTTAAAAG
ATGATAAGAT TGAAGATTTA AAGAGAATGT ATAATTTATT TAGTAGAGTA
TCAGATGGTT TAAATTTAAT GAAAGATGTA ATTAGTAGTT ATGTTAAAGA
AATTGGTAGA GGAATAGTAA TGGATGAAGA AAAGACAAAA GAATCAGGTA
CTTATTTCCA ATCATTATTA GATCTTAAAG ATAAATATGA TAACCTTTTA
CAAAATGCAT TATATAATGA TAAACAATTC ATTCATTCAA TTCAACAAGC
ATTTGAATAT TTTATAAATT TAAATCCAAA ATCACCAGAA TATATTTCAT
TATTTATTGA TGAGAAATTA AAGAAAGGAT TAAAAGGAGT TAGTGAAGAA
GAGGTTGATA TCATATTGGA TAAGATATTG ATGTTGTTTA GATTAATTCA
AGAAAAGGAT GTATTTGAAA AATACTATAA ACAACATTTA GCAAAACGTT
TATTATTGGG TAGAAGTATA TCAGACGATG CAGAACGTAA CATGATTGCA
AAGTTAAAGA CAGAATGTGG CTATCAATTC ACATCTAAAT TGGAGGGTAT
GTTCACCGAT ATGAGATTAT CACAAGATAC AATGAGTGGT TTTAAAACTT
ATATTCAAAA TCTAAAGAAG GCATTACCAA TCGATTTGAA TGTTCACGTT
TTAACCACTG GTTTTTGGCC AACTCAAAAC ACTGCAAACT GTAATTTACC
TCGTGAAATC CTCTTATGTT GTGAGGCTTT CAAATCTTAT TATCTATCAA
ATCATAATGG TCGTCTATTG TTATGGCAAA CTAATATGGG TACCGCAGAA
ATTAAAGCAA ACTTCCCTTC GAAATCTCAC GAACTTCAAG GTTTCCTCCT
ATCAAATGGT CATCTTATTA CTCTTTAATG ACCAATCGAA ATTAACCTTT
AAAGAGATTG CTGATCAAAC TGGTATTCCA ACTATTGATT TAAAGAGAAA
TCTTTTAGCT TTAACAAATC CAAAGAATAA AATTTTAGAT AGAGAATTAC
CATCAACAAC ATCATCAACA ACAACAACAA CAACAACAGC AACATCATCA
TCAACTTCAA CTTCACCATC TAGTAGTTCA TCTTCAATCT CCACTCCAAC
ACCAAGTAAA TCAATTGATG AATCCGATGT ATTCGCTTTT AATACTAAAT
TTAAGAGTAA ATTATTCCGT GTTAAAGTTA TGGCAGTCGT TCAAAAAGAA
ACACCAGTTG AAGAGAAAGA AACTCGTGAT AAAGTTGATG AAGATAGAAA
ACATCAAATT GAAGCTTCCA TCGTTCGTAT TATGAAAGCT CGTAAAACAC
TTGAACACTC TAATCTTGTC TCTGAAGTCA TCAAGCAACT TCAATCTCGT
TTTGTTCCAA ATCCAGTCAT TGTAAAGAAA CGTATCGAAT CTTTAATTGA
AAGAGAATAT CTTGAAAGAT CAAAACAAGA CAGAAAGATT TATAATTATA
TGGCTTAAAA AAAAAAA

Translated Amino Acid Sequence Contig-U11867-1

hkylfylfkyylfnlkrrhrfllksq*FLLLLSPLLFYIRIIVNCRLVFFFFFXKK---

---FSINKTKINFFFFKK***ffkndgktkw*nsiqeftkswsisgsrfskenveiikds
netnsstkck*sli*rvv*kriqygitktw*fiiq*skedgr*tfesgc*ncirinr*kv
strikleldqsqdfnvnd*ryldvyg*klc*tk*sl*cf*swtlpfqr*cgslfnn*r*i
ikyslingtkrkrr*sy**nfnkkyssnvn*frs*f*kciy*rl*ktivikdiitlssti
tnshsnm*lsrlyekg*nllkrrvgksftlfr**f*tkikrsl*ktinfksyenfn*ygk
lwfnfnvkr**d*rfkenv*fi**sirwfkfnercn**lc*rnw*rnsng*rkdkriryl
fpiiirs*r*i**pftkcii***tihsfnstsi*ifykfkskitriyfiiy**eikerik
rs**rrg*yhig*didvv*insrkgci*kil*ttfsktfiig*kyirrcrt*hdckvkdr
mwlsihi*iggyvhryeiitrynewf*nlyskskegitnrfecsrfnhwflanskhckl*
fts*nplml*gfqillsiks*wssivman*ygyrrn*sklpfeisrtsrfppikwssyys
lmtnrn*plkrlliklvfqlli*reif*l*qiqrikf*ienyhqqhhqqqqqqqqqhhhq
lqlhhlvvhlqsplqhqvnqlmnpmysllilnlrvnysvlklwqsfkkkhqlkrkklvik
lmkieniklklpsfvl*klvkhlntlilslksssnfnlvlfqiqsl*rnvsnl*lkenil
kdqnkterfiiiwlkkk

Homology Contig-U11867-1 vs CSM-Contig

Sequences producing significant alignments:                        (bits)  Value


Contig-U11867-1 (Contig-U11867-1Q) /CSM_Contig/Conti...  3626  0.0
Contig-U12208-1 (Contig-U12208-1Q) /CSM_Contig/Conti...    46  2e-04
Contig-U09782-1 (Contig-U09782-1Q) /CSM_Contig/Conti...    42  0.003
Contig-U11777-1 (Contig-U11777-1Q) /CSM_Contig/Conti...    40  0.012
Contig-U14889-1 (Contig-U14889-1Q) /CSM_Contig/Conti...    38  0.046
Contig-U11930-1 (Contig-U11930-1Q) /CSM_Contig/Conti...    38  0.046
Contig-U11110-1 (Contig-U11110-1Q) /CSM_Contig/Conti...    38  0.046
Contig-U09718-1 (Contig-U09718-1Q) /CSM_Contig/Conti...    38  0.046
Contig-U03282-1 (Contig-U03282-1Q) /CSM_Contig/Conti...    38  0.046
Contig-U14471-1 (Contig-U14471-1Q) /CSM_Contig/Conti...    36  0.18

Homology Contig-U11867-1 vs DNA

Sequences producing significant alignments:                  (bits) Value  N


(BJ421761) Dictyostelium discoideum cDNA clone:ddv43b23, 5' ...  1289   0.0    1
(BJ325402) Dictyostelium discoideum cDNA clone:dda14d08, 5' ...  1279   0.0    1
(BJ363335) Dictyostelium discoideum cDNA clone:ddc26j06, 5' ...  1179   0.0    1
(BJ422194) Dictyostelium discoideum cDNA clone:ddv45m02, 5' ...  1094   0.0    1
(C84036) Dictyostelium discoideum slug cDNA, clone SSC509.        777   0.0    4
(BJ342495) Dictyostelium discoideum cDNA clone:dda14d08, 3' ...   726   0.0    4
(BJ437094) Dictyostelium discoideum cDNA clone:ddv33n01, 3' ...   694   0.0    3
(BJ376291) Dictyostelium discoideum cDNA clone:ddc21m22, 3' ...   684   0.0    3
(BJ446621) Dictyostelium discoideum cDNA clone:ddv63f07, 3' ...   666   0.0    3
(C90277) Dictyostelium discoideum slug cDNA, clone SSI609.        783   0.0    3

Homology Contig-U11867-1 vs Protein

Sequences producing significant alignments:                      (bits) Value


(Q54NZ5) RecName: Full=Cullin-3;          Short=CUL-3; AltName: ...  1096   0.0
AK072402_1(AK072402|pid:none) Oryza sativa Japonica Group cDNA c...   595   0.0
A86395(A86395) hypothetical protein T2P11.2 [imported] - Arabido...   595   0.0
AM484063_2(AM484063|pid:none) Vitis vinifera contig VV78X066416....   592   0.0
AK230392_1(AK230392|pid:none) Arabidopsis thaliana mRNA for cull...   593   0.0
FB802359_1(FB802359|pid:none) Sequence 21632 from Patent WO20080...   582   0.0
AC013289_13(AC013289|pid:none) Arabidopsis thaliana chromosome 1...   592   0.0
AM478489_5(AM478489|pid:none) Vitis vinifera contig VV78X092018....   587   0.0
AC146568_18(AC146568|pid:none) Medicago truncatula clone mth2-10...   585   0.0
AL606454_2(AL606454|pid:none) Oryza sativa genomic DNA, chromoso...   548   0.0