Homology Contig-U11806-1 vs DNA
Query= Contig-U11806-1 (Contig-U11806-1Q) /CSM_Contig/Contig-U11806-1Q.Seq.d
(1162 letters)
Database: ddbj_A
108,600,042 sequences; 106,710,029,556 total letters
Searching..................................................done
Score E
Sequences producing significant alignments: (bits) Value N
(AU053361) Dictyostelium discoideum slug cDNA, clone SLI462. 642 e-180 1
(BJ367011) Dictyostelium discoideum cDNA clone:ddc41d04, 5' ... 410 e-177 2
(BJ381284) Dictyostelium discoideum cDNA clone:ddc41d04, 3' ... 618 e-172 1
(EJ270369) 1095353007399 Global-Ocean-Sampling_GS-27-01-01-1... 40 0.010 3
(AC006871) Caenorhabditis elegans clone Y53G8X, *** SEQUENCI... 36 0.15 8
(AC006803) Caenorhabditis elegans clone Y53G8A, *** SEQUENCI... 36 0.15 8
(AM488460) Vitis vinifera contig VV78X046202.15, whole genom... 34 0.56 3
(AC122453) Mus musculus BAC clone RP24-258A18 from chromosom... 36 0.70 6
(AC202838) MACACA MULATTA BAC clone CH250-381I8 from chromos... 48 0.80 1
(DL209504) Full length cDNA. 48 0.80 1
(DD036212) Full length cDNA. 48 0.80 1
(CQ843295) Sequence 1942 from Patent EP1440981. 48 0.80 1
(AC186777) Trichinella spiralis chromosome UNK clone TS195-3... 48 0.80 1
(AK126245) Homo sapiens cDNA FLJ44257 fis, clone TKIDN2015263. 48 0.80 1
(AC007066) Homo sapiens chromosome 9, clone hRPK.355_O_1, co... 48 0.80 1
(AC154972) Bos taurus clone CH240-27K19, WORKING DRAFT SEQUE... 48 0.80 1
(AL731645) Human DNA sequence *** SEQUENCING IN PROGRESS ***... 48 0.80 1
(AC170455) Bos taurus clone CH240-260D19, WORKING DRAFT SEQU... 48 0.80 1
(CR914101) Sus scrofa BES. 48 0.80 1
(DA636305) Homo sapiens cDNA clone KIDNE2018533, 5' end, mRN... 48 0.80 1
(CP000123) Mycoplasma capricolum subsp. capricolum ATCC 2734... 40 0.82 15
(AC126789) Medicago truncatula clone mth2-36n23, complete se... 42 0.86 5
(BW163926) Ciona intestinalis cDNA, clone:rcigd004f16, 3' en... 44 1.2 2
(CU019593) Pig DNA sequence *** SEQUENCING IN PROGRESS *** f... 36 1.6 7
(AA536519) LD17163.5prime LD Drosophila melanogaster embryo ... 36 1.9 3
(BW343807) Ciona intestinalis cDNA, clone:ciem825k10, 5'end,... 44 2.2 2
(EK511733) 1095515481858 Global-Ocean-Sampling_GS-32-01-01-1... 34 2.2 3
(AY534144) Saprolegnia ferax strain ATCC 36051 mitochondion,... 30 2.2 7
(AC147753) Otolemur garnettii clone CH256-502N6, WORKING DRA... 40 2.3 6
(AC177235) Strongylocentrotus purpuratus clone R3-40O12, WOR... 38 2.4 6
(CO313159) EK231741.5prime Exelixis FlyTag CK01 pCDNA-SK+ Dr... 36 2.4 3
(AA440181) LD14790.5prime LD Drosophila melanogaster embryo ... 36 2.4 3
(AA539268) LD18950.5prime LD Drosophila melanogaster embryo ... 36 2.5 3
(EK534257) 1095516021054 Global-Ocean-Sampling_GS-32-01-01-1... 34 2.5 3
(AA392572) LD12821.5prime LD Drosophila melanogaster embryo ... 36 2.5 3
(DC226831) Plasmodium berghei strain ANKA cDNA clone:SG00710... 40 2.6 2
(BW302172) Ciona intestinalis cDNA, clone:cinc024k12, 5' end... 44 2.6 2
(BW302165) Ciona intestinalis cDNA, clone:cinc024k04, 5' end... 44 2.6 2
(AA539418) LD17532.5prime LD Drosophila melanogaster embryo ... 36 2.6 3
(AA735262) LD02674.5prime LD Drosophila melanogaster embryo ... 36 2.7 3
(AC130138) Rattus norvegicus 2 BAC CH230-204B23 (Children's ... 42 2.7 6
(EC068225) 19639 CK01 Drosophila melanogaster cDNA clone CK0... 36 2.8 3
(CO196263) EK002517.5prime Exelixis FlyTag CK01 pCDNA-SK+ Dr... 36 2.8 3
(AA392583) LD12832.5prime LD Drosophila melanogaster embryo ... 36 2.8 3
(AA440224) LD14846.5prime LD Drosophila melanogaster embryo ... 36 2.9 3
(AI455084) LD20056.5prime LD Drosophila melanogaster embryo ... 36 3.0 3
(AC191599) Medicago truncatula chromosome 2 BAC clone mth2-1... 46 3.2 1
(AC126778) Medicago truncatula clone mth2-32j21, complete se... 46 3.2 1
(DM109591) HAEMOPHILUS INFLUENZAE TYPE B. 46 3.2 1
(AC158118) Bos taurus clone CH240-48G14, WORKING DRAFT SEQUE... 46 3.2 1
(CU469053) Pig DNA sequence *** SEQUENCING IN PROGRESS *** f... 46 3.2 1
(AC174705) Bos taurus clone CH240-242E24, WORKING DRAFT SEQU... 46 3.2 1
(AQ917243) T233215b Medicago truncatula BAC library Medicago... 46 3.2 1
(EJ427632) 1093015235636 Global-Ocean-Sampling_GS-28-01-01-1... 46 3.2 1
(AL220305) Tetraodon nigroviridis genome survey sequence T7 ... 46 3.2 1
(CC557725) CH240_466C7.T7 CHORI-240 Bos taurus genomic clone... 46 3.2 1
(CN475989) USDA-FP_125079 Diaprepes abbreviatus, Diaprepes r... 46 3.2 1
(AA539304) LD18992.5prime LD Drosophila melanogaster embryo ... 36 3.2 3
(CT261963) Sus scrofa genomic clone PigE-75G24, genomic surv... 36 3.2 2
(AA538616) LD18187.5prime LD Drosophila melanogaster embryo ... 36 3.2 3
(BI563379) RH34009.5prime RH Drosophila melanogaster normali... 36 3.3 3
(EU677193) Oedogonium cardiacum strain SAG 575-1b chloroplas... 36 3.4 8
(AA540963) LD20172.5prime LD Drosophila melanogaster embryo ... 36 3.7 3
(BI624719) RH64331.5prime RH Drosophila melanogaster normali... 36 3.9 3
(AA438682) LD13009.5prime LD Drosophila melanogaster embryo ... 36 4.2 3
(AE017308) Mycoplasma mobile 163K complete genome. 36 4.9 19
(CP001279) Nautilia profundicola AmH, complete genome. 34 5.1 2
(GS333964) LuSp104K02_1061063891146_TP POTATO-B-01-100-110KB... 40 5.4 2
(CT009617) Human DNA sequence *** SEQUENCING CANCELLED *** f... 34 5.7 2
(AC193219) Pan troglodytes BAC clone CH251-285O10 from chrom... 38 5.7 5
(AC079907) Homo sapiens 12q BAC RP11-554E23 (Roswell Park Ca... 34 5.9 2
(EU494493) Drosophila sucinea voucher 108510 16S ribosomal R... 34 6.0 3
(CU856696) Pig DNA sequence *** SEQUENCING IN PROGRESS *** f... 42 6.1 6
(AC221401) Bos taurus clone CH240-406D5, WORKING DRAFT SEQUE... 36 6.2 4
(AM463318) Vitis vinifera, whole genome shotgun sequence, co... 34 6.3 2
(AC135034) Homo sapiens clone RP11-746J15, *** SEQUENCING IN... 38 6.7 6
(AE017332) Mycoplasma hyopneumoniae 232, complete genome. 34 7.0 14
(DU409243) 1098486030975 CHORI-243 Ovis aries genomic clone ... 40 7.2 2
(AM646290) Entamoeba moshkovskii FIC GSS, clone mosh035h05.q1k. 42 7.5 2
(CW100745) 104_468_11004271_116_34398_028 Sorghum methylatio... 36 8.0 2
(EC820994) SME00005601 esmbsro2 Sawyeria marylandensis cDNA,... 32 8.2 2
(EC217697) 76478 CK01 Drosophila melanogaster cDNA clone CK0... 36 8.2 2
(CT025521) Mouse DNA sequence from clone RP23-337J16 on chro... 38 8.5 4
(AL732611) Mouse DNA sequence from clone RP23-135A21 on chro... 38 8.5 6
(EB492009) 1099341407034 12-DrosW-norm-1P5Kb Drosophila will... 32 8.5 3
(DU520039) 1098609838467 CHORI-243 Ovis aries genomic clone ... 40 8.6 2
(AM657102) Entamoeba moshkovskii FIC GSS, clone mosh052g05.p1k. 42 9.1 2
(EA771775) Sequence 59 from patent US 7381808. 34 9.3 4
(DD080769) Method and nucleic acids for the differentiation ... 34 9.3 4
(AX659088) Sequence 59 from Patent WO02103041. 34 9.3 4
(AX657814) Sequence 59 from Patent WO02103042. 34 9.3 4
(AX349075) Sequence 1 from Patent WO0202808. 34 9.3 4
(AX347354) Sequence 1 from Patent WO0200705. 34 9.3 4
(AL032640) Caenorhabditis elegans YAC Y43F8A. 38 9.4 3
(AC078960) Homo sapiens Xp BAC RP11-692P14 (Roswell Park Can... 38 10.0 4
>(AU053361) Dictyostelium discoideum slug cDNA, clone SLI462.
Length = 528
Score = 642 bits (324), Expect = e-180
Identities = 324/324 (100%)
Strand = Plus / Plus
Query: 726 cataactggtaacaatccagatgtaattttaaataatggcgataaaatttgttttgcaaa 785
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 91 cataactggtaacaatccagatgtaattttaaataatggcgataaaatttgttttgcaaa 150
Query: 786 ttatcttagatgtttattggaaaaagaagcaacaaagggtcatattagattatttaaagc 845
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 151 ttatcttagatgtttattggaaaaagaagcaacaaagggtcatattagattatttaaagc 210
Query: 846 tttggttgataatggttataaatcaatattttcaaaaagatcaaatgattcaaaaagtat 905
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 211 tttggttgataatggttataaatcaatattttcaaaaagatcaaatgattcaaaaagtat 270
Query: 906 tttcgatcaaattcaattacgtgaaatactctatcgtgctttaaataataaccatttaca 965
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 271 tttcgatcaaattcaattacgtgaaatactctatcgtgctttaaataataaccatttaca 330
Query: 966 attatctctttatcttttagaggattgtaatatttcaatcactaatacccaattttattc 1025
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 331 attatctctttatcttttagaggattgtaatatttcaatcactaatacccaattttattc 390
Query: 1026 aaatgtttctaaaggatctgcaac 1049
||||||||||||||||||||||||
Sbjct: 391 aaatgtttctaaaggatctgcaac 414
Lambda K H
1.37 0.711 1.31
Matrix: blastn matrix:1 -3
Number of Sequences: 108600042
Number of Hits to DB: 1,070,298,799
Number of extensions: 70852395
Number of successful extensions: 6585603
Number of sequences better than 10.0: 97
Length of query: 1162
Length of database: 106,710,029,556
Length adjustment: 24
Effective length of query: 1138
Effective length of database: 104,103,628,548
Effective search space: 118469929287624
Effective search space used: 118469929287624
X1: 11 (21.8 bits)
S2: 22 (44.1 bits)
Dictyostelium discoideum cDNA Project Home