<Clone: Contig-U11804-1> <SEQ> <Translated> <CONTIG> <DNA> <Protein> <PSORT> <MOTIF>

Dictyostelium discoideum cDNA Contig-U11804-1

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Assembled

Chromosomal Location of Contig-U11804-1

< more Chromosomal info >

Chromosome Number 2
Length 8467578
Start Poin 4,179,135
End Point 4,180,121
Strand PLUS

Sequence Contig-U11804-1

AAAAAAACAA ATCAAAAACA CCCCTTCCCC AATTCCACTC AAAGATAGTT
TTTAGATATT TTTCTAACAA AATATTTGTT TAATTTCATT ACATATAATT
TAATTATTAT TTAATTTTTT AATAAAAAAA GTTTTTCAAA ATAAGCAATA
TCAAAGTCTA TTTTTAAATA TACTTGATAT TATTTATTTT ATTACCTTTT
TTTAAATTTA ATTACATATA TATCAAAAAA TTTACAGTTA TAATAGCATT
TTCAATTCAA TGAATATTAT TTATTTCACT ATCCCATAAA CTATTCACCC
ACAAAAAAAA ACAAGAACAA AAAAGTAAAA AAGAAGTAAA AAAANGAAAA
AAAAAACCAA ACCAANTTTT TAAGANAANA AAAANC---- ----------
------NNNN NNNNNTCGGT ACCGATGTAT TGAAAATTAA ATTTGGTTAT
GATGAGAAGA AAGCTGCAAA TTATATGGCG GCAGAAGCAA TTGTAAATAG
TATTTTACCA ATTTTCACTG GCTGGTTTAT TATTAATTTA CGTGGTAGAA
AAATTCAAAT AATGGCATTC GCATCGTTTT TATTAGGAAT GGGTGTACTG
TTATTGAATG TAACCAATGC AAATCCATTG CCTTGGATCA TTATGTGTGG
TGTTGGTTTC TCATTTTTAA ATACAACTTT AATGTCGTGT GTACCATTGT
TGGTTGATAT GTCAATCGTT GGTACTGCTT ATGGTATAGT TACAACAGCC
TACAATATTA ATATTATGGC TTTTCCACCA TTATTAGATT ATGTAAAACA
ATCAACTGGT TCATATACTA TTTCTTTGGC AATTCTATCA ATGTCATCAG
TAGTAACCAT AATGTTATTG GCTTTATTAA AATATTGGGA TTTACAAGTA
CCACTATCCC AATCTTTAGA TTCACCTTTA ACTACAATTA ATAATAATGA
TTTATTAATG AAAATTAGAT AAAGTTATNA TAANAGAAAA AGATTTTAAN
AAAAAAAGT

Translated Amino Acid Sequence Contig-U11804-1

<All Frames> 
knksktplpqfhskivfryfsnkifv*fhyi*fnyylif**kkffkisnikvyf*iylil
fillpffkfnyiyikkftviiafsiq*ILFISLSHKLFTHKKKQEQKSKKEVKKXKKKPN
QXFKXXKXXXX---

---XXXXGTDVLKIKFGYDEKKAANYMAAEAIVNSILPIFTGWFIINLRGRKIQIMAFAS
FLLGMGVLLLNVTNANPLPWIIMCGVGFSFLNTTLMSCVPLLVDMSIVGTAYGIVTTAYN
INIMAFPPLLDYVKQSTGSYTISLAILSMSSVVTIMLLALLKYWDLQVPLSQSLDSPLTT
INNNDLLMKIR*syxxrkrf*xkk


Homology Contig-U11804-1 vs CSM-Contig

<more CONTIG info> 
Sequences producing significant alignments:                        (bits)  Value


Contig-U11804-1 (Contig-U11804-1Q) /CSM_Contig/Conti...  1146  0.0
Contig-U01756-1 (Contig-U01756-1Q) /CSM_Contig/Conti...    42  0.001
Contig-U04573-1 (Contig-U04573-1Q) /CSM_Contig/Conti...    40  0.005
Contig-U02225-1 (Contig-U02225-1Q) /CSM_Contig/Conti...    40  0.005
Contig-U01903-1 (Contig-U01903-1Q) /CSM_Contig/Conti...    40  0.005
Contig-U01539-1 (Contig-U01539-1Q) /CSM_Contig/Conti...    40  0.005
Contig-U12080-1 (Contig-U12080-1Q) /CSM_Contig/Conti...    38  0.018
Contig-U04842-1 (Contig-U04842-1Q) /CSM_Contig/Conti...    38  0.018
Contig-U14243-1 (Contig-U14243-1Q) /CSM_Contig/Conti...    36  0.071
Contig-U12865-1 (Contig-U12865-1Q) /CSM_Contig/Conti...    36  0.071


Homology Contig-U11804-1 vs DNA

<more DNA info> 
Sequences producing significant alignments:                  (bits) Value  N


(BJ381281) Dictyostelium discoideum cDNA clone:ddc41c04, 3' ...  1146   0.0    1
(AC123513) Dictyostelium discoideum strain AX4 chromosome 2 ...  1078   0.0    5
(BJ367006) Dictyostelium discoideum cDNA clone:ddc41c04, 5' ...   157   5e-47  3
(AC209554) Homo sapiens chromosome 4 clone ABC10-44748500F13...    40   0.15   3
(AC147850) Carollia perspicillata clone 320O17, WORKING DRAF...    50   0.18   1
(AZ551359) ENTFE21TR Entamoeba histolytica Sheared DNA Entam...    48   0.18   2
(AZ545451) ENTEL36TR Entamoeba histolytica Sheared DNA Entam...    48   0.18   2
(BH146794) ENTPV92TR Entamoeba histolytica Sheared DNA Entam...    48   0.19   2
(AC146181) Pan troglodytes chromosome UNK clone RP43-36D20, ...    42   0.28   6
(GO267941) VBL1_5_F21_E001.g1 Normalized cDNA library from c...    34   0.50   2


Homology Contig-U11804-1 vs Protein

<more Protein info> 
Sequences producing significant alignments:                      (bits) Value


AC117070_20(AC117070|pid:none) Dictyostelium discoideum chromoso...   355   1e-96
CP000316_2025(CP000316|pid:none) Polaromonas sp. JS666, complete...    52   3e-05
CT005266_15(CT005266|pid:none) Leishmania major strain Friedlin,...    49   3e-04
AM502246_15(AM502246|pid:none) Leishmania infantum chromosome 28...    48   6e-04
CP000360_2480(CP000360|pid:none) Acidobacteria bacterium Ellin34...    47   0.001
CU633750_1209(CU633750|pid:none) Cupriavidus taiwanensis str. LM...    47   0.001
AP008230_4749(AP008230|pid:none) Desulfitobacterium hafniense Y5...    46   0.002
BC086873_1(BC086873|pid:none) Homo sapiens solute carrier family...    46   0.002
(Q66HE2) RecName: Full=Monocarboxylate transporter 13;          ...    45   0.003
AK124901_1(AK124901|pid:none) Homo sapiens cDNA FLJ42911 fis, cl...    45   0.003


<Clone: Contig-U11804-1> <SEQ> <Translated> <CONTIG> <DNA> <Protein> <PSORT> <MOTIF>

Dictyostelium discoideum cDNA Project Home