Homology Contig-U11729-1 vs Protein

Query= Contig-U11729-1 (Contig-U11729-1Q) /CSM_Contig/Contig-U11729-1Q.Seq.d
         (862 letters)

Database: nrp_B
           3,236,559 sequences; 1,051,180,864 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

(Q9SU25) RecName: Full=Transcription initiation factor IIF subun...    35   3.2

>(Q9SU25) RecName: Full=Transcription initiation factor IIF subunit
           alpha;          Short=TFIIF-alpha; AltName: Full=General
           transcription factor IIF subunit 1; AltName:
           Full=Transcription initiation factor RAP74 homolog;
               Short=AtRAP74;  &AL049730_20(AL049730|pid:none)
           &AL161534_24(AL161534|pid:none) &D85135(D85135)
          Length = 649

 Score = 35.0 bits (79), Expect = 3.2
 Identities = 15/47 (31%), Positives = 30/47 (63%)
 Frame = +1

Query: 718 TEEYIKIVLQKSKKVKSLDLINIFKGPLKNPDNKPIFLAMVHNVARV 858
           TE+ I+ VL + K+V + DL++ FK  LK  ++K  F  ++  ++++
Sbjct: 482 TEDEIRAVLMEKKQVTTQDLVSRFKARLKTKEDKNAFANILRKISKI 528

Lambda     K      H
   0.318    0.134    0.401

Gapped
Lambda     K      H
   0.267   0.0410    0.140

Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Sequences: 3236559
Number of Hits to DB: 629,471,212
Number of extensions: 8232434
Number of successful extensions: 21089
Number of sequences better than 10.0: 1
Number of HSP's gapped: 21077
Number of HSP's successfully gapped: 1
Length of query: 287
Length of database: 1,051,180,864
Length adjustment: 127
Effective length of query: 160
Effective length of database: 640,137,871
Effective search space: 102422059360
Effective search space used: 102422059360
Neighboring words threshold: 12
Window for multiple hits: 40
X1: 16 ( 7.3 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 41 (21.7 bits)
S2: 32 (16.9 bits)