Dictyostelium discoideum cDNA Contig-U11727-1

Assembled

Chromosomal Location of Contig-U11727-1

Sequence Contig-U11727-1

TTTTTTAAAC CCTATTTTTA TTTTTCCTTA AAATAAAATA AAATAAAATC
AAAAAATAGG ATGTCAGAAC ATAGACATAG ATCAGGTGAT TTACATCAAC
AAAATAAAGG ATTCAAAGGA GGTAAACATG ATAGTAAAGG CGCTATCAAG
AGAAGAGCAC AAGGTAAAAT TGAAACCAAT GGAGCAAGAC AATCAATCAA
AAATTTAGCA ATTGTAAACA ATAAAGATGC AATGAGACAA AAACATCAAA
AATTGGTTAA ATCTAAAAAG AATGAATTAT TAGAAAGAAA AAGATTAGGT
TTACCAGATC AAGTTGCACC ACGTGTTGTT ACAATTATTA AATTATCAGA
ATCATGTAAT ACCAAAAAAG TAAAAGAAAT GTTATTACAA AAATTTAAAT
TAAATATAAA TACTGGTGAA ATGGAAATGG ATAATGAGGA AACATTAAAT
AATAAAAACA ATAATAATGA TAATTTTACA ACTATTTCAT TAACAAGTAA
AGTTAGAATG ATGTTATTAG AATGTCAAAC AATGGCATAC GATCAAGTTA
TTGAATTTTG TAAACTTTCA GATATTATAT TATTTGTAAT TGATGCAAAT
CAAGCCAAAT TAAATTCTGA AGCAGAACGT ATTTTCACGA TTGTTAAAGC
ACAATCAGTG CCAACCGTGA TTGAAATCAT TCAAAATTTA GATC------
----GATTAT GCAAAGATTT TCCAATTCCA TTCATTCAAT CAATCAATGA
GAGCATCGAT TGCTATTCTT GATAATGCAC CAGCCAAACC AGATATGTAT
GTTAGAATTC ATTTAGTTAA TGGTCCAAAA CAATTGGTTG AGCGTAATAC
CACCGCGATC ACCACCAAGC CAGAGGTTGC CGTCGGTCTT TACCGTTATG
AAAATAAGAT TTCATTATTA CATTTCTCTG TTGAAAAACA TAAATCCTAT
GAAGAGACTG TTAGATCTAA AGAAGAGGTT TACTTTCACT TTGGTTGGAG
AAAATTCTCA ACTTCACCAA TCTATTCAAT TAGTTCACCA AATTGTGATA
AACAAAAGTT TGAAAAGTTT TTATTACCTG CTAGAAATAC AATGGCAACA
ATCTATGGTC CAATCACTTA TCCACCAGCT CCATTATTAA TTTTCAATGG
TAAGGATTGT AATGAATTGG TTGCAACTGG TTATCTCTCA AGTGTAAATC
CTGATCGTAT CATTTGTAAA CGTATCATTC TCACTGGTGT TATTGCTAAA
TCAATCTCAA AGAAATTCGT AACCGTTAAA GATATGTTTT ATTATCCAGA
AGATATTAAT TGGTTTAAAA AAGTTGAACT TTATACAAAG ATGGGTCGTG
TTGGTCATAT AAAAGAACCT TTAGGTACTC ATGGTCGTAT GAAATGTCAA
TTCGATGGTA CTATGAATCA ACAAGATACA GTTTGTATGA ATCTTTATAA
AAGAGTTTAT CCAAAAGGAT TAAAGATGAT TCATCTTTAT TAAAATTAGA
ATAAACAAAT AAAAAAAAAA ATAAAAAAAA ATAATTAAAT AAAATAAATA
ATTTTAAAAA AAAATAAAAA AAAAAAAAAA AAAA

Translated Amino Acid Sequence Contig-U11727-1

ffkpyfyfslk*NKIKSKNRMSEHRHRSGDLHQQNKGFKGGKHDSKGAIKRRAQGKIETN
GARQSIKNLAIVNNKDAMRQKHQKLVKSKKNELLERKRLGLPDQVAPRVVTIIKLSESCN
TKKVKEMLLQKFKLNINTGEMEMDNEETLNNKNNNNDNFTTISLTSKVRMMLLECQTMAY
DQVIEFCKLSDIILFVIDANQAKLNSEAERIFTIVKAQSVPTVIEIIQNLD---

---DYAKIFQFHSFNQSMRASIAILDNAPAKPDMYVRIHLVNGPKQLVERNTTAITTKPE
VAVGLYRYENKISLLHFSVEKHKSYEETVRSKEEVYFHFGWRKFSTSPIYSISSPNCDKQ
KFEKFLLPARNTMATIYGPITYPPAPLLIFNGKDCNELVATGYLSSVNPDRIICKRIILT
GVIAKSISKKFVTVKDMFYYPEDINWFKKVELYTKMGRVGHIKEPLGTHGRMKCQFDGTM
NQQDTVCMNLYKRVYPKGLKMIHLY*n*nkqikkkikknn*ik*iilkknkkkkkk

Homology Contig-U11727-1 vs CSM-Contig

Sequences producing significant alignments:                        (bits)  Value


Contig-U11727-1 (Contig-U11727-1Q) /CSM_Contig/Conti...  2111  0.0
Contig-U14271-1 (Contig-U14271-1Q) /CSM_Contig/Conti...    48  3e-05
Contig-U09225-1 (Contig-U09225-1Q) /CSM_Contig/Conti...    48  3e-05
Contig-U06389-1 (Contig-U06389-1Q) /CSM_Contig/Conti...    48  3e-05
Contig-U11175-1 (Contig-U11175-1Q) /CSM_Contig/Conti...    44  5e-04
Contig-U09165-1 (Contig-U09165-1Q) /CSM_Contig/Conti...    44  5e-04
Contig-U05819-1 (Contig-U05819-1Q) /CSM_Contig/Conti...    44  5e-04
Contig-U13063-1 (Contig-U13063-1Q) /CSM_Contig/Conti...    42  0.002
Contig-U12064-1 (Contig-U12064-1Q) /CSM_Contig/Conti...    42  0.002
Contig-U11851-1 (Contig-U11851-1Q) /CSM_Contig/Conti...    42  0.002

Homology Contig-U11727-1 vs DNA

Sequences producing significant alignments:                  (bits) Value  N


(BJ446036) Dictyostelium discoideum cDNA clone:ddv61n12, 3' ...  1528   0.0    2
(BJ445353) Dictyostelium discoideum cDNA clone:ddv59p03, 3' ...  1059   0.0    2
(BJ426495) Dictyostelium discoideum cDNA clone:ddv59p03, 5' ...   436   0.0    3
(BJ393822) Dictyostelium discoideum cDNA clone:dds32c19, 5' ...   357   0.0    3
(BJ411354) Dictyostelium discoideum cDNA clone:ddv4f05, 5' e...   357   0.0    3
(AU039371) Dictyostelium discoideum slug cDNA, clone SLH660.      605   0.0    2
(BJ364931) Dictyostelium discoideum cDNA clone:ddc33d14, 5' ...   357   e-127  2
(BJ379014) Dictyostelium discoideum cDNA clone:ddc33d14, 3' ...   157   2e-33  1
(AW334145) S31A11 AGS-1 Pneumocystis carinii cDNA 3', mRNA s...    48   7e-05  2
(GR231638) CCOI2569.g1 CCOI Tremella mesenterica jelly fungu...    36   0.015  2

Homology Contig-U11727-1 vs Protein

Sequences producing significant alignments:                      (bits) Value


(Q54YA7) RecName: Full=Pre-rRNA-processing protein TSR1 homolog;      527   e-148
AC136447_9(AC136447|pid:none) Oryza sativa (japonica cultivar-gr...   234   7e-60
AC135599_13(AC135599|pid:none) Oryza sativa (japonica cultivar-g...   234   7e-60
FB872809_1(FB872809|pid:none) Sequence 92082 from Patent WO20080...   233   1e-59
BT064373_1(BT064373|pid:none) Zea mays full-length cDNA clone ZM...   230   1e-58
BC149918_1(BC149918|pid:none) Bos taurus TSR1, 20S rRNA accumula...   215   3e-54
BC161761_1(BC161761|pid:none) Xenopus tropicalis TSR1, 20S rRNA ...   214   5e-54
AK001396_1(AK001396|pid:none) Homo sapiens cDNA FLJ10534 fis, cl...   211   6e-53
AK154063_1(AK154063|pid:none) Mus musculus 2 days neonate thymus...   210   1e-52
(Q5SWD9) RecName: Full=Pre-rRNA-processing protein TSR1 homolog;...   209   2e-52