Dictyostelium discoideum cDNA Contig-U11711-1

Assembled

Chromosomal Location of Contig-U11711-1

Sequence Contig-U11711-1

ATTCATACCA AAATCAAAAT CAAAATAAAT AATATTTTTA ATTCATATTA
AAAAAATGAT ATCACAATCT CCACCATTTA ATAATTTTAA TATTACAAAA
AATAATAATA TTAATAATTT TAATATTACA AATAATAATA ATATAAATAA
TAAATGTGTA TATCATACAA ATAATGATAT TACATTTTTA TGCTCAGATT
GTAAATTAAT TCCATGTTGT AATAGTTGTA TTTCTCAAAA TAATTTTCAT
CGTGGTCATA AAATTGATTT AATTGATGAT TCAACCATTT GTTCATTAAT
TAATAATTTT AAAGAAGAAA TTTATCCAAA TATTTTAAAA TTATTAAAAA
ATGATGAAAT CACAAACAAT GAATCAATTG AAAAATTTGA AAAAATTAAA
ATTGAATATC AAGATAATAT TGAAACCATT TCAAATCATT TCAATAACAT
TCATCAAATA ATATCATTAA TTGAAAATGA AATAAAAAAT AATTTATCAA
TTACTTTTAA TAATAATGTG AATTTGAATT CAAATATTTC AAATTTAATT
AATAATAATA ATGAATCATT AAAATCAATA ATTAATAATA ACAAAACAAT
TGAAAGAATT AATAATTTCA ATGTTGATTG TGATGATGAA AATCA-----
-----NNNNN NNNNTCAAAT TAATAATGAT GATTCATTGG ATAATGATAA
TGAAGAAGAA GAAAATAATT TCTCTAATAT GAATAAAGAT GAAGAATCTG
AAAACTATAA CAATTTTGGT ATTACTGATT TAAACATAAG CTACAATAGT
GTAAAAACTG AATATGAAGA TCAAATTCAT GGTTTAAAAT ATTGTTATGA
TAAAAACAAT TTAAAATATG TAAATTATAA AAACTCTAAA TTTTATTTAC
AAATTGAAAG TGATTCAGAT TGTGCATTAG AAAATGAATT TACAAGAATT
GCATTTGGAA ATAAAAGTAC TGATATATCA AAATTCAAAT TCAATTCAAA
AACATTTGCA GTTATGCTTT TAGATGGATT TGACCAATCA ATTGAACCAA
ATACATTACC AGAAACTGTT GAAGGATTAC ATATTTATGA TATAAAGAAA
CCATTAGTTG TTGGTTCAAT TCCACCAACT GTTAAAAGAA TTGTATTTAA
TGAAAGTTTT AATCAAGTTT TAACACCGGG TTTAATATCA GAAGGTGTTG
AATTTTTACA TCTTTATAAT ATTAAAAAAC CATTAGTTGT TGGTTCAATA
CCATCAACTG TAAAGAATGT AATTTTAGGT GATGGTTTTG ATCATGCTTT
AACTCCAGGT ATTCTTCCAG AAGGTGTTGA AAGATTATTT TTATATGATA
TAAAACTTCA ATTAGAGATT AAATCAATAC CGTCATCAGT AATATCATTA
AAATTTCATG ATGGGTTTAA TCATGATTTA GAACCTGGTA TCATTCCAAA
TGGTGTTAGA AATTTACAAA TTCAAAATTT AAAAAAACCA TTGGTTATTG
GCTCTATTCC TCAGTCTGTT AATAGGTTAA CAATTAATCA ATCAATACAA
TTTAAATTAA TACCTGATAT TATACCATCA AATGTTAACT TTCTTTATTT
ATATGATGTT AAAGAAGAAT TACAAATTGG TTCAATTCCT TCAAATGTAA
AATCTTTAGC ATTAAATTAT AAATTTAATT CCCCATTATT ACCAAAAATA
ATTCCAGATG GTGTGGAAAC CTTAGATCTA TATAATGTAT TACAACCTTT
ACAGCGCGGT TCAATACCAT CATCAGTTGA TACATTAACT ATTCATGATG
GATTCAATCA GATTTTAAGG AGATCAATCA TTCCAAATAG CGTTAAAACT
CTTCATCTAC ATGACATAAA ACAAAATTTA CAAATTGGTT CAATACCATC
TTCAGTAAAA AAATTGATAC TTCATGATAA ATTCAATCAA AATTTATCTG
TTGGTATTAT TCCAGAAGGT GTTGAATATT TATCTTTACA TAATATCATA
CAAAATTTAG AAATTGGTTC AATACCAAAA TCTATGTTAC AAATTACATT
NAAAAAAGTT TTGATAAATC AGTACCTCCT TTTGTAATTC CTAGGGCACT
AAACTTTTAT AGCAAATAAA AATTAAAATA AAAAAAAA

Translated Amino Acid Sequence Contig-U11711-1

fipksksk*IIFLIHIKKMISQSPPFNNFNITKNNNINNFNITNNNNINNKCVYHTNNDI
TFLCSDCKLIPCCNSCISQNNFHRGHKIDLIDDSTICSLINNFKEEIYPNILKLLKNDEI
TNNESIEKFEKIKIEYQDNIETISNHFNNIHQIISLIENEIKNNLSITFNNNVNLNSNIS
NLINNNNESLKSIINNNKTIERINNFNVDCDDENXXX---

---QINNDDSLDNDNEEEENNFSNMNKDEESENYNNFGITDLNISYNSVKTEYEDQIHGL
KYCYDKNNLKYVNYKNSKFYLQIESDSDCALENEFTRIAFGNKSTDISKFKFNSKTFAVM
LLDGFDQSIEPNTLPETVEGLHIYDIKKPLVVGSIPPTVKRIVFNESFNQVLTPGLISEG
VEFLHLYNIKKPLVVGSIPSTVKNVILGDGFDHALTPGILPEGVERLFLYDIKLQLEIKS
IPSSVISLKFHDGFNHDLEPGIIPNGVRNLQIQNLKKPLVIGSIPQSVNRLTINQSIQFK
LIPDIIPSNVNFLYLYDVKEELQIGSIPSNVKSLALNYKFNSPLLPKIIPDGVETLDLYN
VLQPLQRGSIPSSVDTLTIHDGFNQILRRSIIPNSVKTLHLHDIKQNLQIGSIPSSVKKL
ILHDKFNQNLSVGIIPEGVEYLSLHNIIQNLEIGSIPKSMLQITXKKVLINQYLLL*flg
h*tfiankn*nkkk

Homology Contig-U11711-1 vs CSM-Contig

Sequences producing significant alignments:                        (bits)  Value


Contig-U11711-1 (Contig-U11711-1Q) /CSM_Contig/Conti...  2783  0.0
Contig-U09506-1 (Contig-U09506-1Q) /CSM_Contig/Conti...    62  3e-09
Contig-U10404-1 (Contig-U10404-1Q) /CSM_Contig/Conti...    46  2e-04
Contig-U14767-1 (Contig-U14767-1Q) /CSM_Contig/Conti...    44  6e-04
Contig-U11472-1 (Contig-U11472-1Q) /CSM_Contig/Conti...    44  6e-04
Contig-U11158-1 (Contig-U11158-1Q) /CSM_Contig/Conti...    44  6e-04
Contig-U11765-1 (Contig-U11765-1Q) /CSM_Contig/Conti...    42  0.002
Contig-U08180-1 (Contig-U08180-1Q) /CSM_Contig/Conti...    42  0.002
Contig-U12845-1 (Contig-U12845-1Q) /CSM_Contig/Conti...    40  0.010
Contig-U12680-1 (Contig-U12680-1Q) /CSM_Contig/Conti...    40  0.010

Homology Contig-U11711-1 vs DNA

Sequences producing significant alignments:                  (bits) Value  N


(BJ379591) Dictyostelium discoideum cDNA clone:ddc35i12, 3' ...   878   0.0    3
(BJ372027) Dictyostelium discoideum cDNA clone:ddc11a03, 3' ...   831   0.0    3
(BJ378700) Dictyostelium discoideum cDNA clone:ddc32f15, 3' ...   886   0.0    3
(BJ345847) Dictyostelium discoideum cDNA clone:dda29b11, 3' ...   886   0.0    3
(BJ347650) Dictyostelium discoideum cDNA clone:dda27a23, 3' ...   886   0.0    2
(BJ339742) Dictyostelium discoideum cDNA clone:dda10a07, 3' ...   837   0.0    2
(C90587) Dictyostelium discoideum slug cDNA, clone SSI813.        626   e-175  1
(BJ358699) Dictyostelium discoideum cDNA clone:ddc11a03, 5' ...   268   1e-77  3
(BJ364680) Dictyostelium discoideum cDNA clone:ddc32f15, 5' ...   226   7e-64  3
(BJ409147) Dictyostelium discoideum cDNA clone:dds39g13, 3' ...    44   5e-11  7

Homology Contig-U11711-1 vs Protein

Sequences producing significant alignments:                      (bits) Value


AC115604_12(AC115604|pid:none) Dictyostelium discoideum chromoso...   548   e-156
(Q94481) RecName: Full=FNIP repeat-containing protein cigB;           300   2e-79
U66528_1(U66528|pid:none) Dictyostelium discoideum CigB (cigB) m...   300   2e-79
(Q54FS2) RecName: Full=FNIP repeat-containing protein DDB_G02906...   288   6e-76
(Q54FS1) RecName: Full=FNIP repeat-containing protein DDB_G02906...   260   1e-67
AC116982_8(AC116982|pid:none) Dictyostelium discoideum chromosom...   259   4e-67
AC115612_2(AC115612|pid:none) Dictyostelium discoideum chromosom...   202   4e-50
AC114265_1(AC114265|pid:none) Dictyostelium discoideum chromosom...   182   4e-44
AC117076_9(AC117076|pid:none) Dictyostelium discoideum chromosom...   168   8e-40
AC115680_16(AC115680|pid:none) Dictyostelium discoideum chromoso...   155   4e-36