Homology Contig-U11538-1 vs Protein
Query= Contig-U11538-1 (Contig-U11538-1Q) /CSM_Contig/Contig-U11538-1Q.Seq.d
(1283 letters)
Database: nrp_B
3,236,559 sequences; 1,051,180,864 total letters
Searching..................................................done
Score E
Sequences producing significant alignments: (bits) Value
(Q5SSW2) RecName: Full=Proteasome activator complex subunit 4; A... 96 3e-18
AB168780_1(AB168780|pid:none) Macaca fascicularis testis cDNA, c... 96 3e-18
BC141381_1(BC141381|pid:none) Mus musculus proteasome (prosome, ... 96 3e-18
AY894754_1(AY894754|pid:none) Homo sapiens proteasome activator ... 96 4e-18
(Q14997) RecName: Full=Proteasome activator complex subunit 4; A... 96 4e-18
BC112169_1(BC112169|pid:none) Homo sapiens proteasome (prosome, ... 96 4e-18
AY894755_1(AY894755|pid:none) Homo sapiens proteasome activator ... 96 4e-18
D38521_1(D38521|pid:none) Homo sapiens KIAA0077 mRNA, partial cds. 96 4e-18
AB024034_15(AB024034|pid:none) Arabidopsis thaliana genomic DNA,... 92 4e-17
AJ719859_1(AJ719859|pid:none) Gallus gallus mRNA for hypothetica... 92 5e-17
(Q6NRP2) RecName: Full=Proteasome activator complex subunit 4; A... 92 5e-17
BT067246_1(BT067246|pid:none) Zea mays full-length cDNA clone ZM... 91 1e-16
BT087741_1(BT087741|pid:none) Zea mays full-length cDNA clone ZM... 91 1e-16
BC071768_1(BC071768|pid:none) Homo sapiens proteasome (prosome, ... 90 2e-16
AP004007_6(AP004007|pid:none) Oryza sativa Japonica Group genomi... 81 7e-14
T19279(T19279) hypothetical protein C14C10.5 - Caenorhabditis el... 80 2e-13
CP000583_392(CP000583|pid:none) Ostreococcus lucimarinus CCE9901... 75 7e-12
CU633895_514(CU633895|pid:none) Podospora anserina genomic DNA c... 70 1e-10
AM910996_262(AM910996|pid:none) Plasmodium knowlesi strain H chr... 66 2e-09
T25400(T25400)hypothetical protein T28B8.3 - Caenorhabditis eleg... 66 2e-09
Z81133_5(Z81133|pid:none) Caenorhabditis elegans Cosmid T28B8, c... 66 2e-09
Z81133_6(Z81133|pid:none) Caenorhabditis elegans Cosmid T28B8, c... 66 2e-09
BC054364_1(BC054364|pid:none) Mus musculus proteasome (prosome, ... 66 3e-09
BX295538_3(BX295538|pid:none) Neurospora crassa DNA linkage grou... 64 9e-09
AP007155_947(AP007155|pid:none) Aspergillus oryzae RIB40 genomic... 61 8e-08
AM920437_613(AM920437|pid:none) Penicillium chrysogenum Wisconsi... 61 8e-08
AE017346_6(AE017346|pid:none) Cryptococcus neoformans var. neofo... 60 2e-07
CU928178_156(CU928178|pid:none) Zygosaccharomyces rouxii strain ... 59 4e-07
AK129049_1(AK129049|pid:none) Mus musculus mRNA for mKIAA0077 pr... 57 1e-06
BC090326_1(BC090326|pid:none) Rattus norvegicus proteasome (pros... 57 1e-06
AB173971_1(AB173971|pid:none) Macaca fascicularis brain cDNA clo... 55 4e-06
AY693254_1(AY693254|pid:none) Saccharomyces cerevisiae clone FLH... 52 4e-05
CR382139_126(CR382139|pid:none) Debaryomyces hansenii strain CBS... 50 1e-04
FM992689_723(FM992689|pid:none) Candida dubliniensis CD36 chromo... 49 4e-04
CR380958_374(CR380958|pid:none) Candida glabrata strain CBS138 c... 48 9e-04
FN357304_50(FN357304|pid:none) Schistosoma mansoni genome sequen... 47 0.001
CU928165_101(CU928165|pid:none) Kluyveromyces thermotolerans str... 45 0.004
FN392321_794(FN392321|pid:none) Pichia pastoris GS115 chromosome... 45 0.007
CR382125_524(CR382125|pid:none) Kluyveromyces lactis strain NRRL... 44 0.016
CT005246_102(CT005246|pid:none) Leishmania major strain Friedlin... 42 0.048
CU928171_20(CU928171|pid:none) Kluyveromyces thermotolerans stra... 40 0.14
AB013451_1(AB013451|pid:none) Oryza sativa Japonica Group PibH8 ... 36 3.4
EF068167_1(EF068167|pid:none) Paracentrotus lividus mitochondria... 35 4.5
BC031364_1(BC031364|pid:none) Mus musculus RIKEN cDNA E430025E21... 35 7.6
AM494944_100(AM494944|pid:none) Leishmania braziliensis chromoso... 35 7.6
AM910987_5(AM910987|pid:none) Plasmodium knowlesi strain H chrom... 35 7.6
BC034070_1(BC034070|pid:none) Mus musculus RIKEN cDNA E430025E21... 35 7.6
AK129086_1(AK129086|pid:none) Mus musculus premature mRNA for mK... 35 7.6
>(Q5SSW2) RecName: Full=Proteasome activator complex subunit 4;
AltName: Full=Proteasome activator PA200;
Short=Protein TEMO; &AL662891_1(AL662891|pid:none)
&BC160288_1(BC160288|pid:none)
Length = 1843
Score = 95.9 bits (237), Expect = 3e-18
Identities = 63/229 (27%), Positives = 113/229 (49%), Gaps = 20/229 (8%)
Frame = +3
Query: 618 EIAKDSSGCVYRMSQEFYFESGVIDQFITVLNQTLQSPSWKIRTSILQFVQVFFFNHSFI 797
E+ +D+ C+ MSQ + V + VL+QT +S SW R ++L ++Q F + FI
Sbjct: 1617 ELKRDAKLCLSLMSQGLLYPQQV-PLILQVLSQTARSSSWHARYTVLTYLQTMVFYNLFI 1675
Query: 798 FSNQQTDSIVNT---VLALTKDPQIEIREKSKATLASILIS--FKSDSNM---VENLIKK 953
F N + D++ + ++ L +D Q+E+RE + TL+ +L DS M E L K
Sbjct: 1676 FLNNE-DAVKDIRWLIICLLEDEQLEVREMAATTLSGLLQCNFLTMDSAMQIHFEQLCKT 1734
Query: 954 AIKNLN----------VPDQSFIEKYXXXXXXXXXXXAVPYNIPKYIPSVLQQLSRYSRN 1103
+ +P ++++ + PY++P ++P +L LS + +
Sbjct: 1735 KLPKKRKRDPGSVGDTIPSAELVKRHAGVLGLGACVLSSPYDVPTWMPQLLMNLSAHLND 1794
Query: 1104 SH--YKTAASTISEFWRTHKESWEEDKRQFTEEEAETILSTKVAPSYFA 1244
T T+S F RTH ++W+E K+QFT+++ + V+P Y+A
Sbjct: 1795 PQPIEMTVKKTLSNFRRTHHDNWQEHKQQFTDDQLLVLTDLLVSPCYYA 1843
Score = 42.0 bits (97), Expect = 0.048
Identities = 28/102 (27%), Positives = 47/102 (46%), Gaps = 2/102 (1%)
Frame = +1
Query: 10 GHGLVEFKDQLIDILTVLMESDNKIVLKATSKVIRKLIFSLTRIYPLNTRVVPQTIVNRK 189
G L+ +++QL+ IL + K + ++ L+ S T IYP VP
Sbjct: 688 GKKLLLYREQLVKILQRTLHLTCKQGYTLSCNLLHHLLRSTTLIYPTEYCSVPGGFNKPP 747
Query: 190 ENH--IKYWGSTDLSTILPIEWFEPNENDINFAKLLIDKFLK 309
+ +K WG L I+W P+ +++FA L+D FL+
Sbjct: 748 SEYFPVKDWGKPGDLWNLGIQWHVPSSEEVSFAFYLLDSFLQ 789
Lambda K H
0.318 0.134 0.401
Gapped
Lambda K H
0.267 0.0410 0.140
Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Sequences: 3236559
Number of Hits to DB: 1,718,979,553
Number of extensions: 34155252
Number of successful extensions: 77544
Number of sequences better than 10.0: 48
Number of HSP's gapped: 77447
Number of HSP's successfully gapped: 61
Length of query: 427
Length of database: 1,051,180,864
Length adjustment: 131
Effective length of query: 296
Effective length of database: 627,191,635
Effective search space: 185648723960
Effective search space used: 185648723960
Neighboring words threshold: 12
Window for multiple hits: 40
X1: 16 ( 7.3 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 41 (21.7 bits)
S2: 32 (16.9 bits)
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