Dictyostelium discoideum cDNA Contig-U11538-1

Assembled

Chromosomal Location of Contig-U11538-1

Sequence Contig-U11538-1

TTTAAAGGTG GTCATGGTTT GGTTGAATTT AAAGATCAAT TAATTGATAT
TTTAACGGTG TTAATGGAAT CTGATAATAA GATTGTATTA AAAGCAACTT
CAAAAGTAAT TCGTAAATTA ATATTCTCTC TAACTCGTAT TTATCCATTA
AATACAAGAG TTGTACCACA AACAATCGTT AATAGAAAAG AGAATCATAT
CAAATATTGG GGTTCAACAG ATTTATCAAC TATATTACCA ATTGAATGGT
TTGAACCAAA TGAAAATGAT ATCAATTTCG CTAAATTATT AATTGATAAA
TTTTTGAAAG GAACAAATGA TAAATTATCA AATTATATTA ATTCTTTAAG
AACAAATGAT GAATCAAACA ACAACAACAA TAACAATACA TATAATAGAA
TGAAATTATT AAATTTAGTT AAACCAATTC AAAGTATTTT AAGAGCAGCA
ACATTTTTAA TTAAAGATAC AAGTAATGAG ATTAAACAAT CAAAAGATGA
ATTTAGATAT CAACCAAAGA GATCCAAATT TGAACATGGT GAAATTAG--
---------- --------NN NNNNNNNATT AAAGGCAATT ATGTCTTTAA
CTGGTGACTC AAATTTAGAG ATTGCAAAAG ATTCATCAGG TTGTGTTTAT
AGAATGTCAC AAGAGTTTTA TTTTGAAAGT GGAGTTATTG ATCAATTCAT
TACCGTTTTA AATCAAACCC TTCAATCACC TTCTTGGAAA ATTAGAACTT
CAATTTTACA ATTTGTACAA GTATTTTTCT TTAATCATTC TTTTATATTT
TCAAATCAAC AAACTGATTC AATTGTTAAT ACAGTTTTAG CATTAACAAA
AGATCCACAA ATTGAAATTC GTGAAAAATC AAAAGCAACA TTGGCTTCAA
TTTTAATTTC TTTTAAATCT GACTCAAATA TGGTTGAAAA TTTAATTAAA
AAAGCTATTA AAAATTTAAA TGTACCAGAT CAAAGCTTCA TTGAAAAGTA
TTCATCATTA ATTATTCTTA GTTCTGTTGT ATTGGCGGTA CCTTATAATA
TTCCAAAGTA TATACCATCT GTGCTTCAAC AATTATCAAG ATATTCAAGA
AATAGTCACT ACAAAACTGC AGCATCCACA ATTTCTGAAT TTTGGAGAAC
TCACAAAGAA TCTTGGGAAG AAGATAAGCG TCAATTCACT GAAGAAGAAG
CGGAAACAAT TTTGTCCACA AAGGTTGCAC CTTCTTATTT TGCATAAAAT
ATATATATAT AAATAAAAAT GTAAACATTA AAA

Translated Amino Acid Sequence Contig-U11538-1

FKGGHGLVEFKDQLIDILTVLMESDNKIVLKATSKVIRKLIFSLTRIYPLNTRVVPQTIV
NRKENHIKYWGSTDLSTILPIEWFEPNENDINFAKLLIDKFLKGTNDKLSNYINSLRTND
ESNNNNNNNTYNRMKLLNLVKPIQSILRAATFLIKDTSNEIKQSKDEFRYQPKRSKFEHG
EIXXX---

---XXXLKAIMSLTGDSNLEIAKDSSGCVYRMSQEFYFESGVIDQFITVLNQTLQSPSWK
IRTSILQFVQVFFFNHSFIFSNQQTDSIVNTVLALTKDPQIEIREKSKATLASILISFKS
DSNMVENLIKKAIKNLNVPDQSFIEKYSSLIILSSVVLAVPYNIPKYIPSVLQQLSRYSR
NSHYKTAASTISEFWRTHKESWEEDKRQFTEEEAETILSTKVAPSYFA*niyi*ikm*tl
k

Homology Contig-U11538-1 vs CSM-Contig

Sequences producing significant alignments:                        (bits)  Value


Contig-U11538-1 (Contig-U11538-1Q) /CSM_Contig/Conti...  1086  0.0
Contig-U14683-1 (Contig-U14683-1Q) /CSM_Contig/Conti...    44  4e-04
Contig-U09174-1 (Contig-U09174-1Q) /CSM_Contig/Conti...    44  4e-04
Contig-U11569-1 (Contig-U11569-1Q) /CSM_Contig/Conti...    42  0.001
Contig-U10335-1 (Contig-U10335-1Q) /CSM_Contig/Conti...    42  0.001
Contig-U13321-1 (Contig-U13321-1Q) /CSM_Contig/Conti...    40  0.006
Contig-U13215-1 (Contig-U13215-1Q) /CSM_Contig/Conti...    40  0.006
Contig-U12693-1 (Contig-U12693-1Q) /CSM_Contig/Conti...    40  0.006
Contig-U12244-1 (Contig-U12244-1Q) /CSM_Contig/Conti...    40  0.006
Contig-U12080-1 (Contig-U12080-1Q) /CSM_Contig/Conti...    40  0.006

Homology Contig-U11538-1 vs DNA

Sequences producing significant alignments:                  (bits) Value  N


(BJ339256) Dictyostelium discoideum cDNA clone:dda64n16, 5' ...  1084   0.0    1
(BJ357781) Dictyostelium discoideum cDNA clone:dda64n16, 3' ...   712   0.0    3
(GR574813) CBXU480.g1 CBXU Dictyostelium purpureum 6 hr vege...    60   1e-15  5
(GR567387) CBTF3064.g1 CBTF Dictyostelium purpureum 12 hr ve...    60   1e-15  5
(GR565025) CBTF1251.g1 CBTF Dictyostelium purpureum 12 hr ve...    60   2e-15  5
(GR587587) CCAB2625.g1 CCAB Dictyostelium purpureum 0 hr sta...    40   7e-05  3
(BX005049) Zebrafish DNA sequence from clone DKEY-89O18 in l...    54   3e-04  9
(AC202826) Gossypium hirsutum chromosome UNKNOWN clone ZMMBB...    40   0.003  2
(AC202823) Gossypium hirsutum chromosome UNKNOWN clone ZMMBB...    40   0.003  2
(AE017308) Mycoplasma mobile 163K complete genome.                 36   0.009  18

Homology Contig-U11538-1 vs Protein

Sequences producing significant alignments:                      (bits) Value


(Q5SSW2) RecName: Full=Proteasome activator complex subunit 4; A...    96   3e-18
AB168780_1(AB168780|pid:none) Macaca fascicularis testis cDNA, c...    96   3e-18
BC141381_1(BC141381|pid:none) Mus musculus proteasome (prosome, ...    96   3e-18
AY894754_1(AY894754|pid:none) Homo sapiens proteasome activator ...    96   4e-18
(Q14997) RecName: Full=Proteasome activator complex subunit 4; A...    96   4e-18
BC112169_1(BC112169|pid:none) Homo sapiens proteasome (prosome, ...    96   4e-18
AY894755_1(AY894755|pid:none) Homo sapiens proteasome activator ...    96   4e-18
D38521_1(D38521|pid:none) Homo sapiens KIAA0077 mRNA, partial cds.     96   4e-18
AB024034_15(AB024034|pid:none) Arabidopsis thaliana genomic DNA,...    92   4e-17
AJ719859_1(AJ719859|pid:none) Gallus gallus mRNA for hypothetica...    92   5e-17