Dictyostelium discoideum cDNA Contig-U11524-1

Assembled

Chromosomal Location of Contig-U11524-1

Sequence Contig-U11524-1

GAAAAAAAAT TAATTCAATT TACACCATAG AAATAAAATT AATTCAATTT
ATATAGAAAT AGATAATAAA ATAATAAAAT AATAAATAAT AAAATAATAA
AATAATAATA TAATAAAATA ATAAAATAAT AAAATAATAA TAATAATTAT
AACAATAATA TTATATAATG GAGGATACAG ATACAAGTGG AATTGATGAT
GATGAGGAAT ATGAAGATCT TGTCGATGAT AATAATTTTG AAGATGATGA
TGACGATGAT ATAAATGATG ATGAAATACA AGTTAATACA AGTGACTCGG
ATGATTATCA TGACATTATT GATACATCAA TAACTCATAT GGAAGATGAA
AATGATAGTG ACGATGATGA CAATGAAAAT CAAGAACCCC TTCAAAATAT
TTCAAGCAGG GATTTAGGTT CCATAATTAA CCAACTACTT CATCAACGTA
ACTACTTACA TAGAAATGAC GATGATAATG AAGATGAAGA TCAAGACAAT
AGAGACTACG ATAATCAAGA AGAGGAAGAA GATGAAGAAG ATGACGAAGA
AGAAGAAGAA GAAGAAGATG AGGAAGATGA TGAAGAGGAA GATGATGACG
TAAATGGATA TAGTAGGACA TTTAACCTTT TAAATCCAAT TTTTTTGAAC
CT-------- --CATTTTAG AGGCCATGGA AGGGATGTAA ATAGTGTTTG
TTATTTAGAT CATACTGGTA ATATATTTGT GACTGGAAGT GATGATTCAT
TGATAAGAGT TTGGGATAAA CGTTCATTAG ATAAAAGTGG TAGTGGTAGT
GGTAGTGGTG ATAGTAATAA ACCAGTTGGT ACATTCACTG GTCATTATCA
AGGTTTAACT CATGTTTGTT CAAAAGATGA TGGTACTTAT GTTTTAAGTA
ATAGTAAAGA TCAAACTGCA AAATTATGGG ATATTAGAAA AATGTCAAAT
CCAACTAGTA AACCACCAAG TGGTGGTGTA AATTGGGATT ATCGTTATTA
TTCCTATCCA TCAGATTATG TTATGCCAAA TCCACTACGT AATGGTTCAA
ATTCAAAAGA TGTCTCTTTA ATGAGCTACC GTGGTCATCA AGTGGTTCAA
ACTTTAATTC GTTGTTATTT CTCTCCAATT GAAACAACAG CTCAAAAATA
TATTTATTCA GGTTCTTTCA ATGGTATGAT CTATATCTAT GATGTTTTAA
CTGGTAAATT GGTTAAAACT TTAACAGATA TTCCTCAAAA TAATTCTCAA
AATAATCCTC AAAGATTACA TTTAATTCGT GATTTAGCTT GGTCTCCAAA
TTCTTTAAAT TTAATTTNNG GAAAAA

Translated Amino Acid Sequence Contig-U11524-1

kkinsiytieikliqfi*k*iik**nnk**nnkiii**nnkiik****l*q*YYIMEDTD
TSGIDDDEEYEDLVDDNNFEDDDDDDINDDEIQVNTSDSDDYHDIIDTSITHMEDENDSD
DDDNENQEPLQNISSRDLGSIINQLLHQRNYLHRNDDDNEDEDQDNRDYDNQEEEEDEED
DEEEEEEEDEEDDEEEDDDVNGYSRTFNLLNPIFLN---

---HFRGHGRDVNSVCYLDHTGNIFVTGSDDSLIRVWDKRSLDKSGSGSGSGDSNKPVGT
FTGHYQGLTHVCSKDDGTYVLSNSKDQTAKLWDIRKMSNPTSKPPSGGVNWDYRYYSYPS
DYVMPNPLRNGSNSKDVSLMSYRGHQVVQTLIRCYFSPIETTAQKYIYSGSFNGMIYIYD
VLTGKLVKTLTDIPQNNSQNNPQRLHLIRDLAWSPNSLNLIXGK

Homology Contig-U11524-1 vs CSM-Contig

Sequences producing significant alignments:                        (bits)  Value


Contig-U11524-1 (Contig-U11524-1Q) /CSM_Contig/Conti...  1304  0.0
Contig-U09164-1 (Contig-U09164-1Q) /CSM_Contig/Conti...    52  2e-06
Contig-U12561-1 (Contig-U12561-1Q) /CSM_Contig/Conti...    50  6e-06
Contig-U08227-1 (Contig-U08227-1Q) /CSM_Contig/Conti...    50  6e-06
Contig-U14059-1 (Contig-U14059-1Q) /CSM_Contig/Conti...    48  2e-05
Contig-U11970-1 (Contig-U11970-1Q) /CSM_Contig/Conti...    48  2e-05
Contig-U09546-1 (Contig-U09546-1Q) /CSM_Contig/Conti...    48  2e-05
Contig-U02748-1 (Contig-U02748-1Q) /CSM_Contig/Conti...    48  2e-05
Contig-U12001-1 (Contig-U12001-1Q) /CSM_Contig/Conti...    46  1e-04
Contig-U05175-1 (Contig-U05175-1Q) /CSM_Contig/Conti...    46  1e-04

Homology Contig-U11524-1 vs DNA

Sequences producing significant alignments:                  (bits) Value  N


(BJ357500) Dictyostelium discoideum cDNA clone:dda63b21, 3' ...  1304   0.0    1
(BJ347339) Dictyostelium discoideum cDNA clone:dda26f24, 3' ...  1275   0.0    1
(BJ381163) Dictyostelium discoideum cDNA clone:ddc40h18, 3' ...   920   0.0    1
(BJ338992) Dictyostelium discoideum cDNA clone:dda63b21, 5' ...   406   e-130  4
(BJ366885) Dictyostelium discoideum cDNA clone:ddc40h18, 5' ...   406   e-118  4
(GR577542) CBXW600.g1 CBXW Dictyostelium purpureum 6 hr vege...    48   6e-10  3
(AC179228) Strongylocentrotus purpuratus clone R3-1106O16, W...    46   0.003  2
(ET538936) fcg3x.227550e06 C. graminicola genomic sequence G...    56   0.004  1
(ET532726) fcg3x.224750n15.f C. graminicola genomic sequence...    56   0.004  1
(ET520840) fcg3x.220250d22 C. graminicola genomic sequence G...    56   0.004  1

Homology Contig-U11524-1 vs Protein

Sequences producing significant alignments:                      (bits) Value


AP008211_250(AP008211|pid:none) Oryza sativa (japonica cultivar-...   179   2e-43
BT034322_1(BT034322|pid:none) Zea mays full-length cDNA clone ZM...   177   6e-43
FB865618_1(FB865618|pid:none) Sequence 84891 from Patent WO20080...   169   2e-40
AY099735_1(AY099735|pid:none) Arabidopsis thaliana putative WD-r...   169   2e-40
AF069442_10(AF069442|pid:none) Arabidopsis thaliana BAC T4I9, ch...   169   2e-40
AC105319_7(AC105319|pid:none) Oryza sativa (japonica cultivar-gr...   167   6e-40
FB865632_1(FB865632|pid:none) Sequence 84905 from Patent WO20080...   166   2e-39
(O24467) RecName: Full=LEC14B homolog;  &FB865630_1(FB865630|pid...   166   2e-39
BC075264_1(BC075264|pid:none) Xenopus tropicalis WD repeat domai...   165   4e-39
EU957113_1(EU957113|pid:none) Zea mays clone 1583102 LEC14B mRNA...   164   7e-39