Dictyostelium discoideum cDNA Contig-U11446-1

Assembled

Chromosomal Location of Contig-U11446-1

Sequence Contig-U11446-1

GAACAATTAC AAAAAAATTC AATTGATATT GATCAACTGT TTGACAAGAT
TAATCTTGGT AAATCAAATT TCGATGAATT AAATCAACGT TATCAAGTTG
AACAAAATCA ACTCTTTAAT TTGAAACAAG ATTTACAACA ATCCATAAAT
TTATTTAATG AATCAAAACT ATATACAACT CAATTAGAGA AATCAATCGA
ACAAGTTAAA CGAGTCAATG AGGAACAATC CAATCATCAA GGTGAACTCA
CAATTCTATT GGATGAAGAG AGATATAAAT GTCAAACTTT GAAAATGGAT
TTAGAAAATT CCAAACAAAT CAATCAAAAT CAATCTGATG ATTTAAACTT
TTACAATAAT CAAATAGAAC AATTGAAACA ACAATTATCT GAAAGTAAAG
AATTGGTTCA AGAATGTAAA CTTTCAATTT CACAATTTGA AAAGACTGTA
ATTGAATTAC AATTGGAAAT CAAGGAATTA TCAAATGAAA AACAACAATA
TCAAGAGACT TGCCAATCTC TCTCTTTAAA ATTATCCAAA TTGAATGATC
AATCCAATGA TCAATTGGAA CAAATTCAAC AATTACAATC CTCAAATTCA
TTGGATCTTC AAAATTCTCA AAATCAAATT TCACTCTTAC AAGATTCCCT
AAATGAAACC TCTGATTTGA AATCACAATT ACAATGTCAA CTAAATGAAT
CCAATGAAAT CATTTCAAAA CTTGAATTAA AAATTGAAGA AAATCAAAAT
CAATTAACAG AGTTTGAATT GAAAATTCAA TCATTAAGCT CACAATATAA
TCAAGATTTA CAAGAACAAA TTGAACAATC TAAAATGTTG ATAGATGAAA
AACAATCTTG TATCCAATTA CAAGAGATGG AAATCGATAA AAACAATCAT
AAAATTCAAC AATTACAACA GGATCTTTCA ACTAGTGATT ATAAGATACA
ACAATTACAA ATTGATTTAC AAATTGATAA AGATGAAATT ATTAAACTTG
AAGAAACAAT TTCACAACGT AATCAATCAA TAAAAGAATC ATTAGTCAAG
TGTAATGATC TTCAAGATGA AACCTCTAAA TTGAATGATA ACCTCTTAC-
---------A TGATTCAGAA TTTAAGGAAG TAACTCAAAA TTTACAAGAA
AAAACTAATG AAAACTCTAA CTTACAATGT AAATTGGATC AATTGGAACA
AGAAATTAAA TTTGAAAAGG AATCAAATAC TCATTTGAGA AAAGAGAATG
ATAAAGATAC TTTGGTAATT AAACAATTGG AACAATCAAT TTCCCAACTT
GAACATTTAC ATTCTCAACA AACTGAGAAT TATTTAAAAG AAAGAGAATT
AATTCAACAA CANCATCAAG ATGAAAAACA ATCTTCAATT CAATCAACTC
ATCAATTGAA ATCTAAATTT GATGAAAAAC AACAACAATA CGATGAATCA
CTTGAAAAAC TTTCACAATC AAAACAAGAA TTAAATAAAT TAAAACAAGA
ATTTGATTTA AATATATTGG TGATTCAAAA ATTACAAGAT GATAAACAAT
CACAATCCGA TTCAAATTTA CAATTAAAAT CAAATTTGGA GGAACAACAA
TTACAAAATC AAGAATCCAT TGAAAAAANT TTCAACATTA CAACAACAAG
TCAATCATTT TACAAACAAC CAATTCAATA TTAAACACTT TGGGAGATTC
AAAAATTACA AGATGAAAAC CAATTATCTA TCGAATCCAT TCATCAATTG
AAATCTAAAT TTGATGAAAA ACAACAACAA TACAATGAAT CCATTGAGAA
ATCAAATGAT CTCCAAAAAC AATCCGATCA ATTACAACAA AAACTCGAAA
ATTCAACCAA TGAAAACCAA CAATTACAAG AGAAAATCTC AACTATTCAA
TTGGAACAAA TCAATAATGT TCAACAAGAT GACTCAAAAG ATCTAATAAT
CAAACAACTT CAACAATCTC TCTTGGATAA AGACGATGAA TTAACAACAC
TTTTTGAAAA TTATGAACAA TTAATTAAAA AGAATAAAAT CGATGAGAAA
AAGATTAGAA CTTTGGAATC AAAATTAAAT AGTATTAACA GTACTGTTAA
TCATAATTTA CCTATTAAGA AACCATTAGA AGAAGTTAGT AATAGTAAAA
TTAATATAAT TTCATCTTCA TCACCTTCAA AATTAGAACA ATTGCAAACA
GTTTCAAATC AACAATCACA ACAACAAAAA CCAACTATTA ACAAACCACC
ACTCCAAATT AAAAGAAAAA TTGATTTTAA TTCTCAAGAT AATTTAAAAA
AAACTAAACC ATTTCAATCA ACTACAACTA CAACTACAAC TACAACAACT
ACAACAATTT AATATTTNAA AAAAAAAATN AAAAAATAAA AAACCTGACA
AA

Translated Amino Acid Sequence Contig-U11446-1

EQLQKNSIDIDQLFDKINLGKSNFDELNQRYQVEQNQLFNLKQDLQQSINLFNESKLYTT
QLEKSIEQVKRVNEEQSNHQGELTILLDEERYKCQTLKMDLENSKQINQNQSDDLNFYNN
QIEQLKQQLSESKELVQECKLSISQFEKTVIELQLEIKELSNEKQQYQETCQSLSLKLSK
LNDQSNDQLEQIQQLQSSNSLDLQNSQNQISLLQDSLNETSDLKSQLQCQLNESNEIISK
LELKIEENQNQLTEFELKIQSLSSQYNQDLQEQIEQSKMLIDEKQSCIQLQEMEIDKNNH
KIQQLQQDLSTSDYKIQQLQIDLQIDKDEIIKLEETISQRNQSIKESLVKCNDLQDETSK
LNDNLL---

---DSEFKEVTQNLQEKTNENSNLQCKLDQLEQEIKFEKESNTHLRKENDKDTLVIKQLE
QSISQLEHLHSQQTENYLKERELIQQXHQDEKQSSIQSTHQLKSKFDEKQQQYDESLEKL
SQSKQELNKLKQEFDLNILVIQKLQDDKQSQSDSNLQLKSNLEEQQLQNQESIEKXFNIT
TTSQSFYKQPIQY*tlweiqklqdenqlsiesihqlkskfdekqqqynesieksndlqkq
sdqlqqklenstnenqqlqekistiqleqinnvqqddskdliikqlqqslldkddelttl
fenyeqlikknkidekkirtlesklnsinstvnhnlpikkpleevsnskiniisssspsk
leqlqtvsnqqsqqqkptinkpplqikrkidfnsqdnlkktkpfqstttttttttttti*
yxkkkxkk*kt*q

Homology Contig-U11446-1 vs CSM-Contig

Sequences producing significant alignments:                        (bits)  Value


Contig-U11446-1 (Contig-U11446-1Q) /CSM_Contig/Conti...  4409  0.0
Contig-U12399-1 (Contig-U12399-1Q) /CSM_Contig/Conti...    48  4e-05
Contig-U11788-1 (Contig-U11788-1Q) /CSM_Contig/Conti...    46  2e-04
Contig-U11577-1 (Contig-U11577-1Q) /CSM_Contig/Conti...    46  2e-04
Contig-U05817-1 (Contig-U05817-1Q) /CSM_Contig/Conti...    46  2e-04
Contig-U11513-1 (Contig-U11513-1Q) /CSM_Contig/Conti...    42  0.003
Contig-U11297-1 (Contig-U11297-1Q) /CSM_Contig/Conti...    42  0.003
Contig-U10976-1 (Contig-U10976-1Q) /CSM_Contig/Conti...    42  0.003
Contig-U14316-1 (Contig-U14316-1Q) /CSM_Contig/Conti...    40  0.011
Contig-U11579-1 (Contig-U11579-1Q) /CSM_Contig/Conti...    40  0.011

Homology Contig-U11446-1 vs DNA

Sequences producing significant alignments:                  (bits) Value  N


(BJ386965) Dictyostelium discoideum cDNA clone:dds11k14, 5' ...  1191   0.0    2
(BJ336362) Dictyostelium discoideum cDNA clone:dda53k13, 5' ...  1096   0.0    1
(BJ335684) Dictyostelium discoideum cDNA clone:dda51n02, 5' ...   682   0.0    4
(BJ354442) Dictyostelium discoideum cDNA clone:dda53k13, 3' ...   599   0.0    5
(BJ398246) Dictyostelium discoideum cDNA clone:dds11k14, 3' ...   488   e-141  3
(AF057019) Dictyostelium discoideum interaptin (abpD) gene, ...    42   1e-09  8
(CP001668) Mycoplasma mycoides subsp. capri str. GM12 transg...    38   1e-05  17
(BJ433805) Dictyostelium discoideum cDNA clone:ddv23a06, 3' ...    38   2e-04  5
(AF079445) Dictyostelium discoideum TipC (tipC) gene, comple...    34   4e-04  9
(CP000993) Borrelia recurrentis A1, complete genome.               34   5e-04  22

Homology Contig-U11446-1 vs Protein

Sequences producing significant alignments:                      (bits) Value


AC116920_30(AC116920|pid:none) Dictyostelium discoideum chromoso...   558   e-169
(O76329) RecName: Full=Interaptin; AltName: Full=Alpha-actinin B...    77   4e-21
CP001291_4282(CP001291|pid:none) Cyanothece sp. PCC 7424, comple...    73   5e-11
T18278(T18278;T30579) myosin heavy chain [similarity] - slime mo...    57   2e-10
(P54697) RecName: Full=Myosin-J heavy chain; AltName: Full=Myosi...    57   7e-10
(Q86KL1) RecName: Full=Probable E3 ubiquitin-protein ligase bre1...    47   6e-09
(Q54G05) RecName: Full=Putative leucine-rich repeat-containing p...    64   3e-08
AE017354_2442(AE017354|pid:none) Legionella pneumophila subsp. p...    63   6e-08
A57013(A57013;S44243) early endosome antigen 1 - human  &L40157_...    62   1e-07
(Q15075) RecName: Full=Early endosome antigen 1; AltName: Full=E...    62   1e-07