Dictyostelium discoideum cDNA Contig-U11444-1

Assembled

Chromosomal Location of Contig-U11444-1

Sequence Contig-U11444-1

TGTTGGCCTA CTGGGNATAG TTTAGGTGTA ACAAGTCAAT CATTTGGTGA
ACAAATTACA CATACAATTT GGGTTGAAGC AAATAAATCA CCAAATACTT
CAGGTTCAAC ATTTAATAAA AGATTAATTG TAGTAGGAAA ATGTAAAATT
CTTTCAATTA AAAGAGGTGC ATTTGGTAAA TCAGTTGAAC TCGAATTTCA
TTTATATAAT GTTTCAGAGA TTTGTGCAGA GAGTGAAGAC TCATTTACAA
TAAAATATAA TGGAGATAAT AATGAACAAT TAGGTATTAC AATGAAAGCT
CCACTTGAAA AACTTCAAAT TTTAATTAGA GCAATTAGAA CAAGTTATAG
AAGAATCACT TGTGGTTTCC CAGAAACTTC AATGATGAAA TTAAATTTAC
CTGAAAATAA ATTAATAGAT TTTGAAGTAC CATTAATTAT GTCATCAGCA
CATGGTTTTG TGGATGGATA TATTGCACAT TCATATTATT ATCCAAAAGT
TTATAAATCA GTTGGTACGT TAGATTTTAT TAGATTGATT GATGCATTAT
ATTCAAATGA TGTTACAGAG ATTGATTTCA CACAAATGGC AGGTATTGAA
CCATCTTCAG AGTTAAGTTT TAATTTGTTC ACAGCAATTA CAAGTTTACG
TAATAATACT TATTTCAAAT CTGTAAATTT ATCTGGTTTA CCACATGCAA
ATATTATAAG TGCAATTGGA ATGTGTTTAG AAACAAATAA ATCAATTACA
AAATTAAATT TATCAAATTT AAGAGTTGAA CAATCATTAC AACCTTTAGC
AAATGGTTTA GTTAAAAATC CAAGTAATGT TATTCAAGCA TTAGATTTAT
CAAAAAATAA TATTCCATAT CCAATTATGG CAACACTTTG TGAATGTTTT
TCTAAATTTT CACATGGTTT AGTAAGTTTA AATTTATCAA AATGTGATTT
ACTACCAAAA ACAATTTCAA TATTATTTGA ATCATTTGAA AGAAATTTTG
GAATGTCATT AGCAATTAAA TATTTAAATT TATCACATAA TAAATTTGGA
GATATTGGAT CACAAGCAAT TGGTGGATGG ATGGCAAAGA TTAGAGGATG
TCATTCATTG GATTGTTTAG TTTTAGCCAA TTGTAATTTG AATTTTCAAT
TGATGGGACC ACCATTACGT GTTGTCGATA TAGCAAGATT AGATTTATCA
TTGAATAGAA TCGATAGAGC ATCAGCAAAG ATTTTAGGTA ATGAAGTATT
CGATACAGTT GTCAATTTAT GTGAATTGAA TTTCAGTGGT TGTGGTATGA
ATGCTGATTC TTTGGAAGAC ATTTTCATTT CTTTCAATAG AAATAGAAAG
ATTGCAAATA TCTCACTCAA TCTATCACAC AATGCATTGG GTGCCCGTGA
AGCAACATTA ATGTCAAAAT CAATTTCAGG TTGTCGTTAT TTGGAGGCAT
TGGATATCTC AAACAATCGT TTAAATTGTC GTTCATTAAT AGAGCTTTTA
AATGCAATTA AAAACATTGA TCAATTCAAT TTACACGAGT TAAATATTGC
AAACAATTAC TTTGCACAAG G--------- -TTCAACATT CAATTAATAT
GAATAATGGT GGTAGCAATA TCAATACTTC AAATAGTAGT GTTGGTAGTG
TTAATAANAC AGGCACAACT AATAATAATG TTAATGGTAA ACAACAACAA
CAACAACAAT TAAATGGTGC AGGATCATCA ACCCCAACAG TTTTAGCTGC
NCCATTTGGT GATAGAAATC AACGTTCAAG ATCAAATTCA AACTTTTCAA
CAGCATCAAG TGTAATATCA AAACGTTCAA ATGCATCAAC AAGTGCAGCT
CCTCCAAGAC AATTAATTAC ACAAACATCA GATTGGCAAC CAAATGAAGA
AAGTGAAGCC GATATTTATG ACACTAGCAA TAACAATAGT TTTGTTGCAT
ACAGTACAGA TGATGAAAGT GATAACTATA CTCAAGACTC TTATGATGAT
AATTCCTCAA GAAAATCTAA ACAACAACAA CTAATGAGAA AATCTAAACC
AAAATCAATA AAGTCAAATG CATCAGTTTC TTCTGTAAAA TCTTCAGCAT
CAATTAAATC AGCGTCATCA GTTAAATCAG CATCATCAGT TAAATCAACA
TCATCAGTTA AATCAGCACC ATCAGTTAAA TCCTCAAATT CAGTTAAATC
CTCAAAATCC TCACAAAAAG AAGTCCAACC ACCACCACCT ATTGTAATAA
ATCATGAGGA TGATTCAGAG CAGGAAGAGG AAGAGCAAGA AGAACCAAAA
TTAGAACCAT ACCACGAAGA AGAAGAAGAA GAAGAGGAAG AAGAAGAAAA
TATTGAATCT CAAACTGATC AAGATGAACA AGTTGATTTC CAAGAAGATG
ATAACGAAAG AGAAAATAAT AATTTAAGTG ACTTCCATAG GATTCTCAAA
AAGTTTTANA AAAAAAATAA TAATATTAAA ACA

Translated Amino Acid Sequence Contig-U11444-1

CWPTGXSLGVTSQSFGEQITHTIWVEANKSPNTSGSTFNKRLIVVGKCKILSIKRGAFGK
SVELEFHLYNVSEICAESEDSFTIKYNGDNNEQLGITMKAPLEKLQILIRAIRTSYRRIT
CGFPETSMMKLNLPENKLIDFEVPLIMSSAHGFVDGYIAHSYYYPKVYKSVGTLDFIRLI
DALYSNDVTEIDFTQMAGIEPSSELSFNLFTAITSLRNNTYFKSVNLSGLPHANIISAIG
MCLETNKSITKLNLSNLRVEQSLQPLANGLVKNPSNVIQALDLSKNNIPYPIMATLCECF
SKFSHGLVSLNLSKCDLLPKTISILFESFERNFGMSLAIKYLNLSHNKFGDIGSQAIGGW
MAKIRGCHSLDCLVLANCNLNFQLMGPPLRVVDIARLDLSLNRIDRASAKILGNEVFDTV
VNLCELNFSGCGMNADSLEDIFISFNRNRKIANISLNLSHNALGAREATLMSKSISGCRY
LEALDISNNRLNCRSLIELLNAIKNIDQFNLHELNIANNYFAQ---

---QHSINMNNGGSNINTSNSSVGSVNXTGTTNNNVNGKQQQQQQLNGAGSSTPTVLAAP
FGDRNQRSRSNSNFSTASSVISKRSNASTSAAPPRQLITQTSDWQPNEESEADIYDTSNN
NSFVAYSTDDESDNYTQDSYDDNSSRKSKQQQLMRKSKPKSIKSNASVSSVKSSASIKSA
SSVKSASSVKSTSSVKSAPSVKSSNSVKSSKSSQKEVQPPPPIVINHEDDSEQEEEEQEE
PKLEPYHEEEEEEEEEEENIESQTDQDEQVDFQEDDNERENNNLSDFHRILKKFXKKNNN
IKT

Homology Contig-U11444-1 vs CSM-Contig

Sequences producing significant alignments:                        (bits)  Value


Contig-U11444-1 (Contig-U11444-1Q) /CSM_Contig/Conti...  3277  0.0
Contig-U05668-1 (Contig-U05668-1Q) /CSM_Contig/Conti...    46  2e-04
Contig-U13820-1 (Contig-U13820-1Q) /CSM_Contig/Conti...    40  0.011
Contig-U11245-1 (Contig-U11245-1Q) /CSM_Contig/Conti...    38  0.045
Contig-U11140-1 (Contig-U11140-1Q) /CSM_Contig/Conti...    38  0.045
Contig-U11114-1 (Contig-U11114-1Q) /CSM_Contig/Conti...    38  0.045
Contig-U11081-1 (Contig-U11081-1Q) /CSM_Contig/Conti...    38  0.045
Contig-U09487-1 (Contig-U09487-1Q) /CSM_Contig/Conti...    38  0.045
Contig-U07997-1 (Contig-U07997-1Q) /CSM_Contig/Conti...    38  0.045
Contig-U06345-1 (Contig-U06345-1Q) /CSM_Contig/Conti...    38  0.045

Homology Contig-U11444-1 vs DNA

Sequences producing significant alignments:                  (bits) Value  N


(BJ336263) Dictyostelium discoideum cDNA clone:dda53e11, 5' ...  1241   0.0    1
(BJ395903) Dictyostelium discoideum cDNA clone:dds40i14, 5' ...  1213   0.0    1
(BJ423093) Dictyostelium discoideum cDNA clone:ddv48e03, 5' ...  1203   0.0    1
(BJ424213) Dictyostelium discoideum cDNA clone:ddv51b23, 5' ...  1197   0.0    1
(BJ337248) Dictyostelium discoideum cDNA clone:dda56d23, 5' ...  1185   0.0    1
(BJ354337) Dictyostelium discoideum cDNA clone:dda53e11, 3' ...   648   0.0    3
(BJ358253) Dictyostelium discoideum cDNA clone:dda56d23, 3' ...   660   0.0    5
(BJ441843) Dictyostelium discoideum cDNA clone:ddv48e03, 3' ...   686   0.0    3
(BJ418308) Dictyostelium discoideum cDNA clone:ddv32f11, 5' ...   743   0.0    1
(BJ436815) Dictyostelium discoideum cDNA clone:ddv32f11, 3' ...   513   e-140  1

Homology Contig-U11444-1 vs Protein

Sequences producing significant alignments:                      (bits) Value


AF388524_1(AF388524|pid:none) Dictyostelium discoideum carmil ge...   107   2e-21
T02764(T02764) myosin-I binding protein 125 - Acanthamoeba caste...    98   1e-18
FJ009082_1(FJ009082|pid:none) Homo sapiens CARMIL1a (LRRC16A) mR...    77   4e-12
AY437876_1(AY437876|pid:none) Mus musculus CARMIL mRNA, complete...    75   1e-11
(Q6EDY6) RecName: Full=Leucine-rich repeat-containing protein 16...    75   1e-11
AC114263_20(AC114263|pid:none) Dictyostelium discoideum chromoso...    68   1e-09
BC166169_1(BC166169|pid:none) Xenopus tropicalis hypothetical pr...    64   3e-08
AK125722_1(AK125722|pid:none) Homo sapiens cDNA FLJ43734 fis, cl...    58   2e-06
CP000087_1029(CP000087|pid:none) Rickettsia bellii RML369-C, com...    57   3e-06
EU643474_20(EU643474|pid:none) Adineta vaga clone Av240_B G-prot...    56   7e-06