Dictyostelium discoideum cDNA Contig-U11443-1

Assembled

Chromosomal Location of Contig-U11443-1

Sequence Contig-U11443-1

TAGCAGTAGC GGCAGCAGCA GCAGCAATAA TAATAGTAAT GGATCATTAA
ATCAACATTA TCAACAAGAT TTTACAGGTA TAAATAGTTT AGATGATAAA
GGTACAACAG CATTACATCA TGCTGCATTC AATGGACATA AACAATGTGT
AAAATTATTA TTGGCAAGTA ATGCCTACAC TGATGTACCC GATATTGACG
GGTGCACACC ACTTCACAAT GCAGCATTCA ATGGATATAA AACGGTGATG
CAATTGTTAT TGGACGCAGG TGCCGATGTA AATTCACACG ATATAGATTT
CAATACGGCA TTACATAAAA CATCATTCAC TGGTTATCAC AAATGTGCTG
AACTTTTGAT TGAACGTGGT TCTCAAGTTG AGGCAAGGGA TAATCATGGT
ATCACTCCAT TAATTAAAAG TGCTTCCAGT AAAAACTTTA AATGTCTATC
GGTTTTGATT GAACGTGGGT GGTGCAAATG TAAACTCAAA AGATAATAGT
AATAGCAGTG CACTTCATCA AGCTTGTTAC AAAGGTAGTG ATCCGTTCAG
TCTCACTCTT AATTCAAAAA GGTGCCGAAG TCAATTGTTT CGATAAAGAA
GGGCTACACA CCATTACATA ATGCAGTTTT CAATGGCTTT GAAGAATGTG
CAAAAATTCT ATTAGATAAA GGTGCAAATC CTGATCAAAG AGCTTTAGAT
GGTTGCTCTC CTTTACATTA TGCTGCTTCA AATGGTTTCG AAGGTTGTTT
AAATTTATTA ATTCGTCGTA ATTGTAAATT AGATATAACT GATGTTAAAA
GAGGTAGAAC AGCATTACAT TATGCAGCAA ATAAAGGTCA TATTGGTTGT
GTTGAAATAT TATTAAGAGC AGGTGCAGAT TCAAATATTA AAGATTTATC
AAATAAAACT CCAAAAAATT TAACAAAAGA TTTACAAATC ATATCATTAC
TTTCAACACC AATTGAAGAA TTGAAAAAAC ATAAGAAATC TAAAAAAGGT
AATAGTAAAG TTAATTCACC TGTATACCAA TCACCACGTA TTGATGGTGC
TCCACAACAA CAAACTACTA CAACTACAAC TACCACTACA ACTACTACAA
CTACAACATC TAATCAATCA CCATTATCAC AACACCAATT ATTGGTGGAA
TCTTTATCAT CATCTTCTTC AAATATTCAA GAGGATAAGA ATTTATCACA
ACAAACAATT CCACCTCTCT CACTCTCCCT CCCCCTCCAC TCTCG-----
-----TTGAA ACTACATCAA TCAAAAATAA AGCCAAAGTA ACCTATGCAG
AGTTATTAAC CAAACCGTTA CCACAGGGAA TTCATATTCA AATTCAAAAG
GATTTAGATC GTACATTCCC AAAGCATAGT TTCTTTCAAG AGAAAGGTGG
AATGGGTCAA CAAATTCTTT CCAATATTTT AACGGCTTTT TCAATCTATA
ATCCAGAGGT TGGCTACTGT CAGGGTATGG GTTTCATCAC ATGTTTACTC
TTGATTTACA TGGCAGAGGA GGACGCATTT TGGTCACTCA TTCAACTCAC
CGAACGTTAT GGAATGTCTG AAATGTGGAA ACCAGATTTC CCTTATCTTC
AAACTTGTTT CAGTATATTG GATAACCTAT TGGAGGCGCG TTTCCCTCAA
TTGTTTTTAC ACTTTCAAAA GCAAAATGTT TTCACACCAC TTTTCGCCTC
TCAATGGTTC ATTTGTCTTT TGATCTACAA TTTACCCTTC TCCTATATCG
TCCGTATTTG GGATCTCTTC CTCTATGATG GACTTGTAAT TATATTTGCC
TCTTGTCTTT CCCTCTTTAA AATCTACGAA GATCATCTCT TGAAAATGGA
GTTTGAAGAG ATTGTTAACC TCTTAAAATT CTCAAATGGT GAAGATAAAA
ATATTAAAGC CGATGTTTCA ACCTTTATGA AATTGGTTGT CCATTATCGA
AGTAAAATTA GACATACAAT CAAAGATGGT CTTATTAAAG ATCCAAATGA
ACATCGTATA AATAATAATA ATAATAATAG TACAATTTCA AATAATGGTA
ATAATATTAA TAATAATCAT CATTAAAAAA AAA

Translated Amino Acid Sequence Contig-U11443-1

sssgssssnnnsngslnqhyqqdftginslddkgttalhhaafnghkqcvklllasnayt
dvpdidgctplhnaafngyktvmqllldagadvnshdidfntalhktsftgyhkcaelli
ergsqveardnhgitpliksassknfkclsvliergwckcklkr****qctsssllqr**
svqshs*FKKVPKSIVSIKKGYTPLHNAVFNGFEECAKILLDKGANPDQRALDGCSPLHY
AASNGFEGCLNLLIRRNCKLDITDVKRGRTALHYAANKGHIGCVEILLRAGADSNIKDLS
NKTPKNLTKDLQIISLLSTPIEELKKHKKSKKGNSKVNSPVYQSPRIDGAPQQQTTTTTT
TTTTTTTTTSNQSPLSQHQLLVESLSSSSSNIQEDKNLSQQTIPPLSLSLPLHS---

---ETTSIKNKAKVTYAELLTKPLPQGIHIQIQKDLDRTFPKHSFFQEKGGMGQQILSNI
LTAFSIYNPEVGYCQGMGFITCLLLIYMAEEDAFWSLIQLTERYGMSEMWKPDFPYLQTC
FSILDNLLEARFPQLFLHFQKQNVFTPLFASQWFICLLIYNLPFSYIVRIWDLFLYDGLV
IIFASCLSLFKIYEDHLLKMEFEEIVNLLKFSNGEDKNIKADVSTFMKLVVHYRSKIRHT
IKDGLIKDPNEHRINNNNNNSTISNNGNNINNNHH*kk

Homology Contig-U11443-1 vs CSM-Contig

Sequences producing significant alignments:                        (bits)  Value


Contig-U11443-1 (Contig-U11443-1Q) /CSM_Contig/Conti...  2093  0.0
Contig-U10711-1 (Contig-U10711-1Q) /CSM_Contig/Conti...    86  2e-16
Contig-U12039-1 (Contig-U12039-1Q) /CSM_Contig/Conti...    44  6e-04
Contig-U11147-1 (Contig-U11147-1Q) /CSM_Contig/Conti...    42  0.002
Contig-U10831-1 (Contig-U10831-1Q) /CSM_Contig/Conti...    42  0.002
Contig-U04608-1 (Contig-U04608-1Q) /CSM_Contig/Conti...    42  0.002
Contig-U12128-1 (Contig-U12128-1Q) /CSM_Contig/Conti...    40  0.009
Contig-U11730-1 (Contig-U11730-1Q) /CSM_Contig/Conti...    40  0.009
Contig-U09772-1 (Contig-U09772-1Q) /CSM_Contig/Conti...    40  0.009
Contig-U09426-1 (Contig-U09426-1Q) /CSM_Contig/Conti...    40  0.009

Homology Contig-U11443-1 vs DNA

Sequences producing significant alignments:                  (bits) Value  N


(BJ353949) Dictyostelium discoideum cDNA clone:dda52b06, 3' ...  1364   0.0    1
(BJ382916) Dictyostelium discoideum cDNA clone:ddc46e08, 3' ...  1291   0.0    1
(BJ401360) Dictyostelium discoideum cDNA clone:dds23b03, 3' ...   977   0.0    2
(BJ335909) Dictyostelium discoideum cDNA clone:dda52b06, 5' ...   928   0.0    2
(BJ357869) Dictyostelium discoideum cDNA clone:dda64p24, 3' ...  1057   0.0    1
(BJ339336) Dictyostelium discoideum cDNA clone:dda64p24, 5' ...  1057   0.0    1
(BJ390592) Dictyostelium discoideum cDNA clone:dds23b03, 5' ...   904   0.0    2
(BJ368338) Dictyostelium discoideum cDNA clone:ddc46e08, 5' ...   428   0.0    4
(AU263094) Dictyostelium discoideum vegetative cDNA clone:VS...    84   3e-11  1
(AU053884) Dictyostelium discoideum slug cDNA, clone SLJ867.       84   3e-11  1

Homology Contig-U11443-1 vs Protein

Sequences producing significant alignments:                      (bits) Value


EF146951_1(EF146951|pid:none) Populus trichocarpa clone WS01225_...   165   7e-39
DQ415922_30(DQ415922|pid:none) Cleome spinosa clone BAC Cs1, com...   161   1e-37
AK228688_1(AK228688|pid:none) Arabidopsis thaliana mRNA for puta...   160   1e-37
BT038351_1(BT038351|pid:none) Zea mays full-length cDNA clone ZM...   160   2e-37
BT084174_1(BT084174|pid:none) Zea mays full-length cDNA clone ZM...   160   2e-37
AY136478_1(AY136478|pid:none) Arabidopsis thaliana plant adhesio...   159   4e-37
BT052665_1(BT052665|pid:none) Medicago truncatula clone MTYFD_FE...   157   1e-36
AM502254_659(AM502254|pid:none) Leishmania infantum chromosome 36.    157   2e-36
CR760585_1(CR760585|pid:none) Xenopus tropicalis finished cDNA, ...   152   3e-35
BC159371_1(BC159371|pid:none) Xenopus tropicalis Novel protein s...   152   3e-35