Dictyostelium discoideum cDNA Contig-U11429-1

Assembled

Chromosomal Location of Contig-U11429-1

NO HIT FOUND.

Sequence Contig-U11429-1

AACAACAACA GCAGTTTAGA TAGTAATAAT ATTATCAACG ATAATATTAA
TAACAATCTA AACTTTGAAA ATAATAATAA TAATAACAAT AACAACAACA
ACAACAACAA CAACAACAAC AACAATAATA ATAATAATAA CACCAACAAC
AATAATACTA CAAATGACAC AAGTAAAACT AGTGCCAACA GCACCTCAAC
AGAAGATGAT GAAGAAGATA TACTCGGAAA CAGAAAAAAA GACACCACCG
GGAGCAGAGT TCTTCCCATG GATACTTCGT TGACAGGGGC TGCTGAGCCA
TCAAAAAAGA GAAAGAATAC TCAAGACGAC AGTGAAGTAG AGGTTCAATA
TCATCCACAA AAAAGAGCTT CATTTAGTTT AAATATTTCT CCAACACAAT
TACAAAATGA TCTTAGTTTA AATATTTTTA ATGTCAGCAA CAGTAATAAC
AACAATAATA GTAATAATAA TAATAATAAT AATAATAATA ATAATAATAA
TAATAATAAA ATGTCAATGA TGACAAGTAC ACCAACCAAN AGAAGTGTTA
AACTTGATGA TATATGGCCT GAATTAGAGG AAGGAATTTA TAAGATTATA
ACAGATTTAA ATAAAGGTTT TCCAAAACAA AAATGGATAG CATTATATAC
ACATGTTTAT GATTATTGTG CAGCATCTCA ATCAAAATCA AGTGCAAAAG
TTGGAATGCC AAAACAACAA GCATCTGGTG CAAATTATGT TGGTGAAGAT
TTATATAACC GATTAAATTT ATTTTTAAAA AAGCATATGT CACAATTATT
AAAACTCACA GAAACAAAGA TGGATGAACC ATTATTAAAT TATTACTATA
CAGAATGGGA TCGTTATACA TCTGCAATGA AATATATTAA TAACATTTTT
CAATATATGA ATAGATATTG GATTAAAAGA GAAATTGATG ATGGTAAAAA
AGAAGTTTAT GAAATATTTA TTTTATCATT AGTAATTTGG AGAGATTGTT
TATTTACACC ATTAAAACAA CGTTTAACAA ATTCATTATT GGATATAATT
GAAAGTGAAA GAAATGGTTA TCAAATTAAT ACACATTTAA TTAAAGGTGT
TATAAATGGT TATGTTAGTT TAGGATTAAA TAGAGAGAAA CCAAAGGAAA
CAATTTTACA AGTATATAAA TCTGGTTTTG AAGAATTATT TTTAACAGCA
ACTGAAAATT ATTATACAAA TGAATCTGCT AAATTCATCT CTGAAAATAG
TGTAGCTGAT TATATGAAAA AAGTTGAAAC TAGATTAAAT GAAGAAGTTA
AAAGAGTTCA ACAATATTTA CATCAAAATA CAGAATCTGA ATTAATTGCA
AAATGTGAAA AAGTATTAAT TGAAAAACAT GTTGAAGTAA TTTGGAATGA
ATTTCAAACA TTATTAGAAA AAGATAAAAT TCCAGATTTA ACACGTATGT
ATTCATTATT ATCAAGAATA CCAAGAGGTT TAGAACCATT AAGAACTACA
TTAGAAAAAC ATGTTCAAAA TGTTGGTTTA CAAGCAGTTT CATCAATTGC
AACTAATGGT GTAATTGAAC CAAAAGTTTA TATTGAAACA TTATTAAAAG
TATTTAAAAA ATATAATGAA TTAGTGACTG GAGCATTTAG AAGTGATACA
GGATTTGTAG CATCATTAGA TAAAGCATGT AGAAGATTTA TAAATGAGAA
TGCAGTTACA ATAGCAGCAA AATCATCATC AAAGTCACCA GAGTTATTGG
CACGTTTTAC AGATTTCTTA TTAAAGAAAT CACCAAATAA TCCAGAGGAG
TCAGAGATGG AACAATTGTT GAATGATGTA ATGATTGTAT TTAAATATAT
AGAGGATAAA GATGTTTTTC AAGATTTCTA TTCAAAGATG TTGGCAAAAC
GTTTAATTCA TGGTACTAGT ACCAGTGAAG ATTTAGAGGG TACAATGATT
GGAAAGTTAA AATCAACTTG TGGTTATGAG TACACTTCAA AGCTTCAAAG
AATGTTTACA GATATGTCAT TGTCAAGAGA GTTATTGGAT CGTTTCCAAT
AATCATATTG AACAAGTGGA GAGATCATCA TTGAATATTG ATTTCAGTGT
ATTGGTGCTA GCAACCGGCT CATGGCCATT GCAACCACCG TCCACCAATT
TCTCAATACC AAAGGAGCTT CAAGCCTGTG AGCAATTGTT TCAAAAGTTT
TACCAAAATC AACATTCTGG TCGTAAATTG AATTGGTTAC ATCATTTATC
AAAGGGTGAA TTGAAAACTA AATATTTACA AACTAGTAAG AGTGGTTATA
CTTTACAATG TTCAACCTAT CAAATTGGTG TACTCTTACA ATTCAATCAA
TATGAAACTC TCACCTCTGA AGAGATTCAA GAGAGCACCC AATTGATTGA
TTCCGTTCTT AAGGGTACTT TAACCTCTTT GGCAAAATCA AAGATTCTCT
TGGCTGATCC ACCTCTCGAT GATGAAGAGA TCGCTAAAAC CACAAAATTC
TCTTTGAATA AACAATTTAA AAATAAAAAA ACAAAGATTT TCATCAATGT
TCCAGTGTTA ACTCAAGTCA AAGAAGAAAT TGATTCAATC CATAAAACTG
TCGAAGAGGA TAGAAAACTT CAAATTCAAG CTGCCATCGT TAGAATCATG
AAAATGAGAA AACAATTGGC TCATTCTGGT TTAATGACTG AAGTAATCTC
TCAACTTCAA ACTCGTTTCA ATCCAAAAGT TAATATCATT AAAAAATGTA
TTGATATTTT AATTGAAAAA GAATATTTAA TGAGAGTTGA AGGTAAAAAA
GCATCATTAT TCTTATGTTG CTTAAAAAAA AAAAAAAAAA AAAAAAATTA
AATTAATAAT AATAA----- ---------- -----GTCCA CCAAAGTATG
CAGCCTTGAT GAATAGATGT TGGGAAACCG ATCCCACTCA TCGTCCATCT
TTTCCAGAGA TTTTACCAAT TATGGAGGGA ATGATCTCTG AATTTCAAAA
AGAGAAGAAG GAATCAATAG CGCAAGGTAG ACCAATACCT TATGTTGGCC
CACCTGAAAA AGATCCATCC AATAAACAAC CACCACAAAA TATGGCAACA
ACAATTCAAC AACAATTGGC ACAACAACAA CCTCAACAAT TATTAGAACA
ACAAATACTC CTACAAGTTC AACAACAAGC TCAACTCCAA CACTTACAAC
AACAGTTGGA GCAACAACAA AAATTACAAC AACAATTACA ACAATCACAA
ATTCAACAAA ACAATTTATT ATTACAACAA CAACAAATTC AATTACAAAA
ACTACAACAA GAACAAAAAC AATTAGAATT ATTAAGATTA CAAGAACAAC
AACTAACCGA AAAGCAACAA CAATTAATTC AAAAAGATAA AGAAAGAAGA
CAAAAAGAAA TATTATTACA ACAACAACAA CAACAACAAC AGCAACAACA
ACAAAAAGAA GAGAATGAAT CATTTGAAAA ACAACAAATC AAATTTGAAA
ATCAATTAAA AGTGAAAGAA AAGAAAGNAG NGGNATAAAN NA

Translated Amino Acid Sequence Contig-U11429-1

qqqqfr***yyqr*y**qskl*k*****q*qqqqqqqqqqq*****hqqq*yyk*hk*n*
cqqhlnrr**rrytrkqkkrhhreqssshgyfvdrgc*aikkekeysrrq*srgsisstk
ksfi*fkyfsntitk*s*fkyf*cqqq**qq******************nvnddkytnqx
kc*t**yma*irgrnl*dynrfk*rfsktkmdsiiytcl*llcsisikikckswnaktts
iwcklcw*rfi*pikfifkkayvtiikthrnkdg*tiiklllyrmgslyicneiy**hfs
iye*ild*krn**w*krsl*niyfiisnlerlfiytikttfnkfiigyn*k*kkwlsn*y
tfn*rcykwlc*frik*retkgnnftsi*iwf*riifnsn*kllyk*ic*ihl*k*cs*l
yeks*n*ik*rs*ksstiftskyri*inckm*ksin*ktc*snle*isniirkr*nsrfn
tyvfiiikntkrfrtiknyirktcskcwftssfincn*wcn*tksly*niiksi*ki**i
sdwsi*k*yricsiir*sm*kiyk*ecsynsskiiikvtrvigtfyrflikeitk*srgv
rdgtive*cndci*iyrg*rcfsrflfkdvgktfnswy*yq*rfrgyndwkvkinlwl*v
hfkasknvyryvivkrvigsfpiiilnkwrdhh*ilisvywc*qpahghcnhrppisqyq
rsfkpvsncfksftkinilvvn*igyiiyqrvn*klniyklvrvvilynvqpiklvysyn
sinmklsplkrfkrapn*lipflrvl*plwqnqrfswlihlsmmkrslkpqnsl*innlk
ikkqrfssmfqc*lkskkkliqsiklskrienfkfklpsles*k*ennwlilv**lk*sl
nfklvsiqklislknvlif*lkkni**elkvkkhhysyva*KKKKKKKIKLIII---

---XXXXPPKYAALMNRCWETDPTHRPSFPEILPIMEGMISEFQKEKKESIAQGRPIPYV
GPPEKDPSNKQPPQNMATTIQQQLAQQQPQQLLEQQILLQVQQQAQLQHLQQQLEQQQKL
QQQLQQSQIQQNNLLLQQQQIQLQKLQQEQKQLELLRLQEQQLTEKQQQLIQKDKERRQK
EILLQQQQQQQQQQQQKEENESFEKQQIKFENQLKVKEKKXXX*x

Homology Contig-U11429-1 vs CSM-Contig

Sequences producing significant alignments:                        (bits)  Value


Contig-U11429-1 (Contig-U11429-1Q) /CSM_Contig/Conti...  3977  0.0
Contig-U13044-1 (Contig-U13044-1Q) /CSM_Contig/Conti...   145  4e-34
Contig-U04850-1 (Contig-U04850-1Q) /CSM_Contig/Conti...    46  3e-04
Contig-U00939-1 (Contig-U00939-1Q) /CSM_Contig/Conti...    40  0.016
Contig-U14519-1 (Contig-U14519-1Q) /CSM_Contig/Conti...    38  0.064
Contig-U14472-1 (Contig-U14472-1Q) /CSM_Contig/Conti...    38  0.064
Contig-U14190-1 (Contig-U14190-1Q) /CSM_Contig/Conti...    38  0.064
Contig-U14080-1 (Contig-U14080-1Q) /CSM_Contig/Conti...    38  0.064
Contig-U13944-1 (Contig-U13944-1Q) /CSM_Contig/Conti...    38  0.064
Contig-U12119-1 (Contig-U12119-1Q) /CSM_Contig/Conti...    34  1.00

Homology Contig-U11429-1 vs DNA

Sequences producing significant alignments:                  (bits) Value  N


(AF020287) Dictyostelium discoideum CulA (culA) mRNA, comple...  3041   0.0    5
(BJ364394) Dictyostelium discoideum cDNA clone:ddc31g13, 5' ...  1257   0.0    1
(BJ364759) Dictyostelium discoideum cDNA clone:ddc32h22, 5' ...  1223   0.0    1
(BJ362742) Dictyostelium discoideum cDNA clone:ddc23e09, 5' ...  1166   0.0    1
(BJ387135) Dictyostelium discoideum cDNA clone:dds12c13, 5' ...  1122   0.0    1
(BJ327953) Dictyostelium discoideum cDNA clone:dda22h12, 5' ...  1076   0.0    2
(BJ378790) Dictyostelium discoideum cDNA clone:ddc32h22, 3' ...   969   0.0    3
(BJ398456) Dictyostelium discoideum cDNA clone:dds12c13, 3' ...   928   0.0    3
(BJ343204) Dictyostelium discoideum cDNA clone:dda22h12, 3' ...   781   0.0    3
(BJ377021) Dictyostelium discoideum cDNA clone:ddc22e09, 3' ...   735   0.0    2

Homology Contig-U11429-1 vs Protein

Sequences producing significant alignments:                      (bits) Value


(O60999) RecName: Full=Cullin-1;          Short=CUL-1; AltName: ...   996   0.0
(Q24311) RecName: Full=Cullin homolog 1; AltName: Full=Lin-19 ho...   455   0.0
AM270168_143(AM270168|pid:none) Aspergillus niger contig An08c01...   442   0.0
FB802423_1(FB802423|pid:none) Sequence 21696 from Patent WO20080...   449   0.0
FB802419_1(FB802419|pid:none) Sequence 21692 from Patent WO20080...   431   e-177
CU633897_277(CU633897|pid:none) Podospora anserina genomic DNA c...   436   e-175
AL713629_14(AL713629|pid:none) Aspergillus fumigatus BAC AFA5C11...   421   e-173
AE017356_115(AE017356|pid:none) Cryptococcus neoformans var. neo...   434   e-169
AB016896_1(AB016896|pid:none) Schizosaccharomyces pombe pcu1+ ge...   373   e-158
(Q17389) RecName: Full=Cullin-1;          Short=CUL-1; AltName: ...   392   e-153