Dictyostelium discoideum cDNA Contig-U11414-1

Assembled

Chromosomal Location of Contig-U11414-1

Sequence Contig-U11414-1

TAGCAAATGT ACCAAAGAAT AGTAGATCAA ATGTATTGTT GTACATCTAT
CAAGCAGTCT ATACTTATGG TAAGGTATTA TCAACGGTTG AAGATAGAAG
ACATGAAGTG ATTGGGTTTG CAAGTTGTAG GTTTTTCATT AGTAGAATGG
TGTCAGCAAG TTTACAACGT CTAACTGAAG AGGATTCATT GGATTTGTAT
GTTTTCGATT TAGATTCCAC TCCAATTGGT GAGTTAATTT ATTATAGAGC
TTCAAATGCG GGTAATGATG ATGGTAGTTC ACCAACAAAT ATTATGAATG
GGAAAATGTT GGAAGATCGG TCCGATATGA TCTATTATAA CACTATGAAT
GTTGGTGGTA GGAATTGGAT GATAGCTTTA CGCCCATCTA GAAAGTTCAC
CAATAAACAT TATACTTTCT ATCCCTATGC AATTGGTGGC GTTTGTATGC
TTCTATCAGC ATTGGTTTCA TTTTGGTTTG CTGTAAATAC TAAACATAAT
ATCAAGCTAT CAGCAACCAA TGAAGATTTA CATAAAGAAA TTTATAATAG
AAAATTGGCA GAGAAAGCAT TGGCAGAGAG CCAG------ ----NNNNNN
NNNTAATTCA AATAATTCTT CATCAATTAT TTCACCATCT TCATTAGATT
ATAGTGATGA GAATGAACAT TTAGATCTTG TATTAATTGA TTTAGAAATT
TTAACTGAAC ATCTTAAAAT ACCATCAAAT GTTCCAATAA TATTTATTAC
ACCAACAAAA TTTAATATTT CAAAACATAA TGGAATTTTA AATAAATGGA
TTACTAAATC ACCAAATCAA AGAGTTGAAC TAATAAGAAG ACCTGCAATC
ACTGATAAAT TAATTCCAAT AATTAGTAAA TGTATTAAAT CTCAAGTTCA
ATTTACTTCT GGTTCATCAC AGCTTCAATC ACAACAAGCA AATTTACAAC
AACAATTACT TCATCAACAA CTTTGTAATA ATGGTCAAAC TCTAAATAAT
AATTATAACT CTGGAGGTAT TGGTGGTGGT GGTGGCGGTG GAGGAAGTAA
TACAATGAAT GGTAGTAGTG GTAATTTATC AAATAATAAT AACTTTGGTC
AAACTCCTTT ATCATCTGGT CTTGTTTTAT TAGTACATAC AGGTAGAACT
CCTCCTTTAT TGTAATAATA ATGGAAATTC TATAATTCCA CCATTAGAAT
TAGCTGTTGA TCATCATGGT AATCAACAAC AACAACTTTA CCAACAACAA
CAACAACAAC AAAATAATAG TAGTGGTAAC TTCCAACAAT TTTATCAACA
ACAAAATAAT AATAGTAATA ATAGTTTCAC ACCAACTTTA CCAAATGAAA
ATAGTAATAA TAGCATTATG AATAATAGTT TAAATAACAA TAATACAACA
CCATCAAATG TTACACCAAC ACTTTTTACA TCTAGTCCAT TAGATTTACA
AGGAAGAGAT ACACCTGTAT TACAACCGCC AGCATATAGA AAGAAAGCTT
TAATCGTTGA AGATAATGAA CTAAATCGTA AGGTTTTAGC TCAACTCTTT
AAGAAAATTG ATTGGACCAT TTCATTTGCT GAAAATGGAA GAGAAGCTCT
AAAAGAAATC ACTGGCGAAA GATGTTTCGA TATCGTATTC ATGGATTGTC
AAATGCCAGT TTTGGATGGT TTCCAAACTA CTAAAATAAT AAGATCAAAA
GAAAGGGAAA ATAATTGGAA GAGAATGAAT ATTGTTGCAC TTTCAGCTGG
TTCATCTTCT TCATTTGTTC AAGATTGTTT AGATTCTGGT ATGGATTCTT
TCATGGGTAA ACCAATTACC CTAGCTACTC TAAAAGATGC ACTAGCAAAA
TGGGGTGGTT ATAATAATTA AATAAATCAT GACCATTTTT TTTTAATATT
GTAATTAATA ATAGGGAAAA AAAAAAAAAA A

Translated Amino Acid Sequence Contig-U11414-1

ANVPKNSRSNVLLYIYQAVYTYGKVLSTVEDRRHEVIGFASCRFFISRMVSASLQRLTEE
DSLDLYVFDLDSTPIGELIYYRASNAGNDDGSSPTNIMNGKMLEDRSDMIYYNTMNVGGR
NWMIALRPSRKFTNKHYTFYPYAIGGVCMLLSALVSFWFAVNTKHNIKLSATNEDLHKEI
YNRKLAEKALAESQXXX---

---NSNNSSSIISPSSLDYSDENEHLDLVLIDLEILTEHLKIPSNVPIIFITPTKFNISK
HNGILNKWITKSPNQRVELIRRPAITDKLIPIISKCIKSQVQFTSGSSQLQSQQANLQQQ
LLHQQLCNNGQTLNNNYNSGGIGGGGGGGGSNTMNGSSGNLSNNNNFGQTPLSSGLVLLV
HTGRTPPLL***wkfynstirisc*ssw*sttttlpttttttk***w*lptilsttk***
***fhtnftk*k****hye**fk*q*yntikcytntfyi*sirftrkrytcittasi*ke
sfnr*r**tks*gfsstl*en*ldhfic*kwkrsskrnhwrkmfryrihglsnasfgwfp
ny*nnkikrkgk*leeneycctfswfifficsrlfrfwygffhg*tnypsyskrctskmg
wl**lnks*pfffnivinnrekkkk

Homology Contig-U11414-1 vs CSM-Contig

Sequences producing significant alignments:                        (bits)  Value


Contig-U11414-1 (Contig-U11414-1Q) /CSM_Contig/Conti...  1243  0.0
Contig-U13898-1 (Contig-U13898-1Q) /CSM_Contig/Conti...    48  4e-05
Contig-U07403-1 (Contig-U07403-1Q) /CSM_Contig/Conti...    48  4e-05
Contig-U05092-1 (Contig-U05092-1Q) /CSM_Contig/Conti...    48  4e-05
Contig-U14898-1 (Contig-U14898-1Q) /CSM_Contig/Conti...    46  1e-04
Contig-U13980-1 (Contig-U13980-1Q) /CSM_Contig/Conti...    46  1e-04
Contig-U11154-1 (Contig-U11154-1Q) /CSM_Contig/Conti...    46  1e-04
Contig-U06893-1 (Contig-U06893-1Q) /CSM_Contig/Conti...    46  1e-04
Contig-U13053-1 (Contig-U13053-1Q) /CSM_Contig/Conti...    44  6e-04
Contig-U12521-1 (Contig-U12521-1Q) /CSM_Contig/Conti...    44  6e-04

Homology Contig-U11414-1 vs DNA

Sequences producing significant alignments:                  (bits) Value  N


(BJ335370) Dictyostelium discoideum cDNA clone:dda49o19, 5' ...  1156   0.0    1
(U42597) Dictyostelium discoideum histidine kinase A (dhkA) ...  1148   0.0    1
(AU039844) Dictyostelium discoideum slug cDNA, clone SLG564.     1126   0.0    1
(BJ382903) Dictyostelium discoideum cDNA clone:ddc46c07, 3' ...  1120   0.0    1
(BJ325500) Dictyostelium discoideum cDNA clone:dda14h24, 5' ...  1106   0.0    2
(BJ342619) Dictyostelium discoideum cDNA clone:dda14h24, 3' ...  1078   0.0    1
(AU037441) Dictyostelium discoideum slug cDNA, clone SSD644.      890   0.0    4
(AU033871) Dictyostelium discoideum slug cDNA, clone SLB549.      967   0.0    2
(BJ342902) Dictyostelium discoideum cDNA clone:dda15g11, 3' ...   533   e-147  1
(GR566108) CBTF2067.g1 CBTF Dictyostelium purpureum 12 hr ve...   208   9e-79  6

Homology Contig-U11414-1 vs Protein

Sequences producing significant alignments:                      (bits) Value


AF362375_1(AF362375|pid:none) Dictyostelium discoideum histidine...   200   2e-49
(Q55E44) RecName: Full=Hybrid signal transduction histidine kina...   200   2e-49
CP000089_232(CP000089|pid:none) Dechloromonas aromatica RCB, com...   105   4e-21
CP000749_1167(CP000749|pid:none) Marinomonas sp. MWYL1, complete...   100   1e-19
CP000155_3725(CP000155|pid:none) Hahella chejuensis KCTC 2396, c...   100   2e-19
AF462151_1(AF462151|pid:none) Tritrichomonas foetus hybrid histi...   100   3e-19
CP000388_3573(CP000388|pid:none) Pseudoalteromonas atlantica T6c...    99   4e-19
AE017282_1130(AE017282|pid:none) Methylococcus capsulatus str. B...    99   4e-19
CP000510_3145(CP000510|pid:none) Psychromonas ingrahamii 37, com...    99   5e-19
CP001025_1600(CP001025|pid:none) Burkholderia ambifaria MC40-6 c...    99   7e-19