Homology Contig-U11408-1 vs DNA
Query= Contig-U11408-1 (Contig-U11408-1Q) /CSM_Contig/Contig-U11408-1Q.Seq.d
(2056 letters)
Database: ddbj_A
108,600,042 sequences; 106,710,029,556 total letters
Searching..................................................done
Score E
Sequences producing significant alignments: (bits) Value N
(BJ433705) Dictyostelium discoideum cDNA clone:ddv22o15, 3' ... 880 0.0 2
(BJ407213) Dictyostelium discoideum cDNA clone:dds37h20, 3' ... 880 0.0 2
(BJ353139) Dictyostelium discoideum cDNA clone:dda49i03, 3' ... 837 0.0 1
(BJ401478) Dictyostelium discoideum cDNA clone:dds23k08, 3' ... 783 0.0 1
(BJ414066) Dictyostelium discoideum cDNA clone:ddv17o24, 5' ... 710 0.0 1
(AU265270) Dictyostelium discoideum vegetative cDNA clone:VS... 561 e-155 1
(BJ432188) Dictyostelium discoideum cDNA clone:ddv17o24, 3' ... 367 1e-98 2
(BJ377222) Dictyostelium discoideum cDNA clone:ddc22f01, 3' ... 363 2e-95 1
(GR572001) CBTG425.b1 CBTG Dictyostelium purpureum 12 hr veg... 58 9e-23 5
(BJ371188) Dictyostelium discoideum cDNA clone:ddc57c06, 5' ... 64 4e-11 2
(BJ365526) Dictyostelium discoideum cDNA clone:ddc35m14, 5' ... 64 6e-11 2
(AU073140) Dictyostelium discoideum slug cDNA, clone SSG241. 62 6e-11 2
(BJ368970) Dictyostelium discoideum cDNA clone:ddc48d20, 5' ... 80 4e-10 1
(BJ335883) Dictyostelium discoideum cDNA clone:dda51l20, 5' ... 80 4e-10 1
(BJ335146) Dictyostelium discoideum cDNA clone:dda49i03, 5' ... 80 4e-10 1
(BJ391567) Dictyostelium discoideum cDNA clone:dds24l08, 5' ... 74 3e-08 1
(BJ365409) Dictyostelium discoideum cDNA clone:ddc35d11, 5' ... 74 3e-08 1
(BJ362388) Dictyostelium discoideum cDNA clone:ddc21g13, 5' ... 74 3e-08 1
(BJ336171) Dictyostelium discoideum cDNA clone:dda53b03, 5' ... 74 3e-08 1
(BJ376194) Dictyostelium discoideum cDNA clone:ddc21g13, 3' ... 64 2e-05 1
(BJ370322) Dictyostelium discoideum cDNA clone:ddc53p16, 5' ... 64 2e-05 1
(BJ338556) Dictyostelium discoideum cDNA clone:dda62a06, 5' ... 64 2e-05 1
(BJ369904) Dictyostelium discoideum cDNA clone:ddc52o09, 5' ... 46 0.005 2
(GR142495) CCBX21917.g1 CCBX Mimulus guttatus IM62 floral bu... 54 0.023 1
(AM458532) Vitis vinifera contig VV78X060628.9, whole genome... 42 0.047 2
(DU026231) 6831 Tomato HindIII BAC Library Solanum lycopersi... 42 0.055 2
(AL049795) Human DNA sequence from clone RP4-622L5 on chromo... 52 0.092 1
(AC186720) Felis catus clone RP86-141M21, WORKING DRAFT SEQU... 52 0.092 1
(AC174536) Bos taurus clone CH240-84O21, WORKING DRAFT SEQUE... 52 0.092 1
(EJ169023) 1092344076733 Global-Ocean-Sampling_GS-27-01-01-1... 52 0.092 1
(BJ397520) Dictyostelium discoideum cDNA clone:dds46i18, 5' ... 52 0.092 1
(BJ338872) Dictyostelium discoideum cDNA clone:dda63g09, 5' ... 52 0.092 1
(AC221310) Bos taurus clone CH240-403D23, WORKING DRAFT SEQU... 50 0.36 1
(AC175506) Bos taurus clone CH240-400H14, WORKING DRAFT SEQU... 50 0.36 1
(AC174400) Aotus nancymaae clone CH258-483K23, WORKING DRAFT... 50 0.36 1
(AC174399) Aotus nancymaae clone CH258-452E4, WORKING DRAFT ... 50 0.36 1
(ER612710) 1093016322621 Global-Ocean-Sampling_GS-36-01-01-2... 50 0.36 1
(GR572002) CBTG425.g1 CBTG Dictyostelium purpureum 12 hr veg... 50 0.36 1
(AM180355) Clostridium difficile 630 complete genome. 50 0.36 1
(FN357616) Schistosoma mansoni genome sequence supercontig S... 38 0.71 2
(AC235640) Solanum tuberosum strain Diploid genotype RH89-03... 44 0.96 2
(AC179902) Strongylocentrotus purpuratus clone R3-1003M22, W... 40 1.1 5
(AC106669) Rattus norvegicus clone CH230-99L19, WORKING DRAF... 48 1.4 1
(BJ365180) Dictyostelium discoideum cDNA clone:ddc34l09, 5' ... 48 1.4 1
(EY744149) CS00-C3-705-110-D02-CT.F Sweet orange fruit, deve... 48 1.4 1
(AM876508) Venerupis (Ruditapes) philippinarum EST, 5' end s... 38 2.1 2
(CZ542353) SRAA-aad43f08.b1 Strongyloides ratti whole genome... 36 2.7 3
(EL492748) A01_PFBAMHI-M-T3-PLATE9A.AB1 Blood stage Plasmodi... 42 3.6 2
(EJ811836) 1093017493673 Global-Ocean-Sampling_GS-30-02-01-1... 36 3.7 2
(BI815158) PfESToaa15b06.y1 Plasmodium falciparum 3D7 asexua... 42 4.9 2
(BV600548) S217P60484RH5.T0 Noemie Pan troglodytes troglodyt... 46 5.7 1
(AC166165) Mus musculus BAC clone RP23-381I17 from chromosom... 46 5.7 1
(AC132335) Mus musculus BAC clone RP24-230C24 from chromosom... 46 5.7 1
(AC192127) Pan troglodytes BAC clone CH251-643H13 from chrom... 46 5.7 1
(AC187737) Pan troglodytes BAC clone CH251-508L18 from chrom... 46 5.7 1
(AC213420) Populus trichocarpa clone POP033-D24, complete se... 46 5.7 1
(AC212842) Populus trichocarpa clone POP001-E16, complete se... 46 5.7 1
(GC862117) Sequence 177362 from patent US 6812339. 46 5.7 1
(GC701561) Sequence 16806 from patent US 6812339. 46 5.7 1
(FN357431) Schistosoma mansoni genome sequence supercontig S... 46 5.7 1
(FN357306) Schistosoma mansoni genome sequence supercontig S... 46 5.7 1
(AL360000) Human DNA sequence from clone RP11-413G15 on chro... 46 5.7 1
(AC104434) Homo sapiens chromosome 3 clone RP11-625B23, comp... 46 5.7 1
(AC098654) Homo sapiens chromosome 1 clone RP11-475O6, compl... 46 5.7 1
(AC036102) Homo sapiens chromosome 15 clone CTD-2297L20 map ... 46 5.7 1
(AC022459) Homo sapiens BAC clone RP11-28I21 from 1, complet... 46 5.7 1
(AC013452) Homo sapiens chromosome 15 clone RP11-325E5 map 1... 46 5.7 1
(CU633945) Pig DNA sequence *** SEQUENCING IN PROGRESS *** f... 46 5.7 1
(CU407256) Pig DNA sequence *** SEQUENCING IN PROGRESS *** f... 46 5.7 1
(AC211935) Zea mays chromosome 3 clone CH201-374G20; ZMMBBc0... 46 5.7 1
(AC168489) Strongylocentrotus purpuratus clone R3-3117I12, W... 46 5.7 1
(BH181855) 019_H_19-21 SmBAC1 Schistosoma mansoni genomic cl... 46 5.7 1
(BH181749) 019_K_06-21 SmBAC1 Schistosoma mansoni genomic cl... 46 5.7 1
(BH161084) ENTTE64TF Entamoeba histolytica Sheared DNA Entam... 46 5.7 1
(AZ687881) ENTKJ79TF Entamoeba histolytica Sheared DNA Entam... 46 5.7 1
(AZ687501) ENTMH71TF Entamoeba histolytica Sheared DNA Entam... 46 5.7 1
(AQ474623) CITBI-E1-2588I20.TF CITBI-E1 Homo sapiens genomic... 46 5.7 1
(AQ474498) CITBI-E1-2587A9.TF CITBI-E1 Homo sapiens genomic ... 46 5.7 1
(ET277627) S0162G20_SP6 CHORI-214 Salmo salar genomic clone ... 46 5.7 1
(EK551158) 1095516116008 Global-Ocean-Sampling_GS-32-01-01-1... 46 5.7 1
(AL618805) T7 end of clone 019CD10 of library SmBAC1 from st... 46 5.7 1
(AL618699) T7 end of clone 019BF03 of library SmBAC1 from st... 46 5.7 1
(EJ547328) 1092959272825 Global-Ocean-Sampling_GS-29-01-01-1... 46 5.7 1
(EJ524919) 1092955178541 Global-Ocean-Sampling_GS-29-01-01-1... 46 5.7 1
(DU878380) 274299 Tomato HindIII BAC Library Solanum lycoper... 46 5.7 1
(CT445071) Sus scrofa genomic clone CH242-495N8, genomic sur... 46 5.7 1
(CE058807) tigr-gss-dog-17000322468113 Dog Library Canis lup... 46 5.7 1
(CD073331) MA3-0001U-L243-B06-U.B MA3-0001 Schistosoma manso... 46 5.7 1
(AI395236) MA002681.C8F Soares normalized S8W Schistosoma ma... 46 5.7 1
(W06768) SMEST0404 Schistosoma mansoni, adult worm, Gloria F... 46 5.7 1
(GR184579) CBPG10403.g1 CBPG Mimulus guttatus IM62 roots, se... 46 5.7 1
(GR142494) CCBX21917.b1 CCBX Mimulus guttatus IM62 floral bu... 46 5.7 1
(GR023030) CCIC10433.g1 CCIC Mimulus guttatus IM62 roots (H)... 46 5.7 1
(CP001357) Brachyspira hyodysenteriae WA1, complete genome. 46 5.7 1
(CP001184) Ureaplasma urealyticum serovar 10 str. ATCC 33699... 46 5.7 1
(EC820632) SME00009002 esmbsro2 Sawyeria marylandensis cDNA,... 38 5.7 2
(CW872807) she2h37-23.g_050.ab1 Whole-genome shotgun library... 38 7.0 2
(AV245578) Mus musculus 0 day neonate head cDNA, RIKEN full-... 38 7.3 2
(EK278005) 1095462284319 Global-Ocean-Sampling_GS-31-01-01-1... 36 9.5 3
(ED668254) GM_WBa0098A16.f GM_WBa Glycine max genomic clone ... 42 9.8 2
>(BJ433705) Dictyostelium discoideum cDNA clone:ddv22o15, 3' end,
single read.
Length = 698
Score = 880 bits (444), Expect(2) = 0.0
Identities = 444/444 (100%)
Strand = Plus / Minus
Query: 1437 ggatcaacaagagaatattcattattcatgtaaaaaatgtagatcaaaattatttacaca 1496
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 582 ggatcaacaagagaatattcattattcatgtaaaaaatgtagatcaaaattatttacaca 523
Query: 1497 tggtgagatcatttcgcatgaagagaaatcaaaggtattggatcataattatattaaaca 1556
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 522 tggtgagatcatttcgcatgaagagaaatcaaaggtattggatcataattatattaaaca 463
Query: 1557 aaagaataaggaattgcaacaagctactggtaacattggtgaaggtatttacaatggcaa 1616
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 462 aaagaataaggaattgcaacaagctactggtaacattggtgaaggtatttacaatggcaa 403
Query: 1617 tagttatataactgcaactcattccatcggttgtaaatcattctttttaccacctttgga 1676
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 402 tagttatataactgcaactcattccatcggttgtaaatcattctttttaccacctttgga 343
Query: 1677 ttggatgaaagttgatatcaccaaaaacaatttcaaagtggtttgtccaaattgtgacaa 1736
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 342 ttggatgaaagttgatatcaccaaaaacaatttcaaagtggtttgtccaaattgtgacaa 283
Query: 1737 taaattaggttcctacagtcatacaggtgagaaatgttcatgtagttcaatgattggtga 1796
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 282 taaattaggttcctacagtcatacaggtgagaaatgttcatgtagttcaatgattggtga 223
Query: 1797 atcttgtagaattttaaaaacaagagtcgatactgtctatttaggtgataatggtaaatt 1856
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 222 atcttgtagaattttaaaaacaagagtcgatactgtctatttaggtgataatggtaaatt 163
Query: 1857 attggatttatcattattaaattt 1880
||||||||||||||||||||||||
Sbjct: 162 attggatttatcattattaaattt 139
Score = 46.1 bits (23), Expect(2) = 0.0
Identities = 23/23 (100%)
Strand = Plus / Minus
Query: 1968 taatcgtaataatctttcaaact 1990
|||||||||||||||||||||||
Sbjct: 51 taatcgtaataatctttcaaact 29
Lambda K H
1.37 0.711 1.31
Matrix: blastn matrix:1 -3
Number of Sequences: 108600042
Number of Hits to DB: 1,474,894,830
Number of extensions: 94354214
Number of successful extensions: 8416365
Number of sequences better than 10.0: 100
Length of query: 2056
Length of database: 106,710,029,556
Length adjustment: 24
Effective length of query: 2032
Effective length of database: 104,103,628,548
Effective search space: 211538573209536
Effective search space used: 211538573209536
X1: 11 (21.8 bits)
S2: 23 (46.1 bits)
Dictyostelium discoideum cDNA Project Home