Homology Contig-U11403-1 vs Protein
Query= Contig-U11403-1 (Contig-U11403-1Q) /CSM_Contig/Contig-U11403-1Q.Seq.d
(1331 letters)
Database: nrp_A
3,204,285 sequences; 1,040,966,779 total letters
Searching..................................................done
Score E
Sequences producing significant alignments: (bits) Value
EF676215_1(EF676215|pid:none) Picea sitchensis clone WS0271_O13 ... 251 e-122
CR382137_378(CR382137|pid:none) Debaryomyces hansenii strain CBS... 233 e-120
(Q9FUG4) RecName: Full=DNA repair helicase XPB2; EC=3.6... 249 e-119
AB006707_6(AB006707|pid:none) Arabidopsis thaliana genomic DNA, ... 249 e-119
FM992695_260(FM992695|pid:none) Candida dubliniensis CD36 chromo... 232 e-119
(Q38861) RecName: Full=DNA repair helicase XPB1; EC=3.6... 249 e-118
AB006707_7(AB006707|pid:none) Arabidopsis thaliana genomic DNA, ... 249 e-118
CU928179_600(CU928179|pid:none) Zygosaccharomyces rouxii strain ... 229 e-118
L01414_1(L01414|pid:none) Saccharomyces cerevisiae DNA helicase ... 230 e-117
(O00835) RecName: Full=TFIIH basal transcription factor complex ... 418 e-116
CR954203_411(CR954203|pid:none) Ostreococcus tauri strain OTTH05... 230 e-113
BC129780_1(BC129780|pid:none) Xenopus laevis hypothetical protei... 224 e-113
CP000583_416(CP000583|pid:none) Ostreococcus lucimarinus CCE9901... 229 e-112
(P49135) RecName: Full=TFIIH basal transcription factor complex ... 224 e-112
AY892340_1(AY892340|pid:none) Synthetic construct Homo sapiens c... 224 e-111
AK095557_1(AK095557|pid:none) Homo sapiens cDNA FLJ38238 fis, cl... 224 e-111
T31655(T31655) DNA excision repair cross-complementing protein -... 234 e-111
EF030553_1(EF030553|pid:none) Cricetulus griseus DNA helicase (E... 224 e-111
AM920436_1609(AM920436|pid:none) Penicillium chrysogenum Wiscons... 217 e-110
AK222465_1(AK222465|pid:none) Homo sapiens mRNA for excision rep... 221 e-110
AP007162_442(AP007162|pid:none) Aspergillus oryzae RIB40 genomic... 214 e-109
CP001574_610(CP001574|pid:none) Micromonas sp. RCC299 chromosome... 242 e-109
AM270206_31(AM270206|pid:none) Aspergillus niger contig An09c017... 215 e-109
AL391737_105(AL391737|pid:none) chromosome I of strain GB-M1 of ... 213 e-107
(Q02870) RecName: Full=DNA excision repair protein haywire; ... 224 e-103
AY051975_1(AY051975|pid:none) Drosophila melanogaster LD44022 fu... 224 e-103
A44223(A44223;S26719)DNA excision repair cross-complementing pro... 218 e-101
AY548884_3(AY548884|pid:none) Antonospora locustae chromosome se... 211 e-101
FN357594_10(FN357594|pid:none) Schistosoma mansoni genome sequen... 230 e-100
AP008207_2204(AP008207|pid:none) Oryza sativa (japonica cultivar... 250 2e-69
AC093543_1(AC093543|pid:none) Trypanosoma brucei chromosome 3 cl... 140 2e-60
(O13768) RecName: Full=Probable DNA repair helicase ercc3; ... 224 4e-57
Y17148_1(Y17148|pid:none) Geodia cydonium mRNA for XPB/ERCC-3-li... 213 2e-53
AM502250_444(AM502250|pid:none) Leishmania infantum chromosome 32. 119 1e-50
CT005269_408(CT005269|pid:none) Leishmania major strain Friedlin... 118 2e-50
AM494969_415(AM494969|pid:none) Leishmania braziliensis chromoso... 122 2e-50
AJ439717_1(AJ439717|pid:none) Paracentrotus lividus partial mRNA... 122 3e-49
AM910988_221(AM910988|pid:none) Plasmodium knowlesi strain H chr... 197 7e-49
CP000232_1877(CP000232|pid:none) Moorella thermoacetica ATCC 390... 102 7e-43
BX248356_51(BX248356|pid:none) Corynebacterium diphtheriae gravi... 101 1e-41
AM942444_1574(AM942444|pid:none) Corynebacterium urealyticum DSM... 99 3e-39
BA000035_889(BA000035|pid:none) Corynebacterium efficiens YS-314... 97 3e-39
CP000750_3583(CP000750|pid:none) Kineococcus radiotolerans SRS30... 100 5e-39
CT573213_6543(CT573213|pid:none) Frankia alni str. ACN14A chromo... 97 6e-39
CP000384_4467(CP000384|pid:none) Mycobacterium sp. MCS, complete... 96 1e-38
AP008955_4044(AP008955|pid:none) Brevibacillus brevis NBRC 10059... 96 2e-38
AP009493_3186(AP009493|pid:none) Streptomyces griseus subsp. gri... 99 2e-38
CP001601_751(CP001601|pid:none) Corynebacterium aurimucosum ATCC... 94 2e-38
CP001341_897(CP001341|pid:none) Arthrobacter chlorophenolicus A6... 97 3e-38
CP000249_4351(CP000249|pid:none) Frankia sp. CcI3, complete geno... 96 5e-38
AM711867_2501(AM711867|pid:none) Clavibacter michiganensis subsp... 99 2e-37
CP000325_244(CP000325|pid:none) Mycobacterium ulcerans Agy99, co... 96 2e-37
AM408590_915(AM408590|pid:none) Mycobacterium bovis BCG Pasteur ... 98 2e-37
BA000030_3919(BA000030|pid:none) Streptomyces avermitilis MA-468... 99 3e-37
AE000520_376(AE000520|pid:none) Treponema pallidum subsp. pallid... 89 8e-35
DQ437888_1(DQ437888|pid:none) Cryptococcus neoformans var. neofo... 142 2e-32
AY809793_1(AY809793|pid:none) Schistosoma japonicum SJCHGC05686 ... 141 5e-32
AM502247_74(AM502247|pid:none) Leishmania infantum chromosome 29. 127 9e-28
CP000080_58(CP000080|pid:none) Leishmania major strain Friedlin ... 127 1e-27
DQ158856_20(DQ158856|pid:none) Bigelowiella natans nucleomorph c... 82 3e-25
CR936257_2090(CR936257|pid:none) Natronomonas pharaonis DSM 2160... 76 3e-25
A84295(A84295) probable DNA helicase [imported] - Halobacterium ... 69 2e-20
EF583985_1(EF583985|pid:none) Uncultured haloarchaeon clone fosm... 63 2e-20
CP000910_478(CP000910|pid:none) Renibacterium salmoninarum ATCC ... 82 6e-20
CP000850_4186(CP000850|pid:none) Salinispora arenicola CNS-205, ... 100 1e-19
CU458896_851(CU458896|pid:none) Mycobacterium abscessus chromoso... 100 2e-19
CP000656_1683(CP000656|pid:none) Mycobacterium gilvum PYR-GCK, c... 99 4e-19
CP000431_4896(CP000431|pid:none) Rhodococcus jostii RHA1, comple... 98 8e-19
AM420293_536(AM420293|pid:none) Saccharopolyspora erythraea NRRL... 97 1e-18
AE010300_2128(AE010300|pid:none) Leptospira interrogans serovar ... 97 1e-18
AL583924_195(AL583924|pid:none) Mycobacterium leprae strain TN c... 96 3e-18
AP006618_635(AP006618|pid:none) Nocardia farcinica IFM 10152 DNA... 95 5e-18
CP000777_2404(CP000777|pid:none) Leptospira biflexa serovar Pato... 95 6e-18
CP000509_3894(CP000509|pid:none) Nocardioides sp. JS614, complet... 94 8e-18
CP001140_1226(CP001140|pid:none) Desulfurococcus kamchatkensis 1... 65 9e-18
BA000023_1388(BA000023|pid:none) Sulfolobus tokodaii str. 7 DNA,... 62 3e-17
AE006641_870(AE006641|pid:none) Sulfolobus solfataricus P2, comp... 55 1e-15
CP000505_1747(CP000505|pid:none) Thermofilum pendens Hrk 5, comp... 56 3e-15
CP000968_1536(CP000968|pid:none) Candidatus Korarchaeum cryptofi... 54 4e-14
CP001014_651(CP001014|pid:none) Thermoproteus neutrophilus V24St... 57 1e-13
CP000493_1230(CP000493|pid:none) Hyperthermus butylicus DSM 5456... 52 7e-13
AM942444_1570(AM942444|pid:none) Corynebacterium urealyticum DSM... 71 1e-10
CP000852_803(CP000852|pid:none) Caldivirga maquilingensis IC-167... 44 8e-10
AJ890364_104(AJ890364|pid:none) Emiliania huxleyi virus 86 isola... 44 1e-08
AF265295_1(AF265295|pid:none) Methanosarcina thermophila Rad25-l... 64 2e-08
CP000099_2555(CP000099|pid:none) Methanosarcina barkeri str. Fus... 62 5e-08
CR936257_1914(CR936257|pid:none) Natronomonas pharaonis DSM 2160... 60 2e-07
AJ248288_42(AJ248288|pid:none) Pyrococcus abyssi complete genome... 59 5e-07
CP001366_306(CP001366|pid:none) Halorubrum lacusprofundi ATCC 49... 58 7e-07
B72707(B72707) hypothetical protein APE1073 - Aeropyrum pernix (... 58 9e-07
AE009950_1902(AE009950|pid:none) Pyrococcus furiosus DSM 3638, c... 57 1e-06
AM180088_1243(AM180088|pid:none) Haloquadratum walsbyi DSM 16790... 57 1e-06
AM774419_12(AM774419|pid:none) Halobacterium salinarum PHS4 plas... 56 3e-06
CP001400_1129(CP001400|pid:none) Sulfolobus islandicus M.14.25, ... 55 6e-06
CP001399_1207(CP001399|pid:none) Sulfolobus islandicus L.S.2.15,... 55 6e-06
CP001403_1223(CP001403|pid:none) Sulfolobus islandicus Y.G.57.14... 55 6e-06
CP001404_1486(CP001404|pid:none) Sulfolobus islandicus Y.N.15.51... 55 6e-06
CP001401_1170(CP001401|pid:none) Sulfolobus islandicus M.16.27, ... 55 6e-06
AE000782_351(AE000782|pid:none) Archaeoglobus fulgidus DSM 4304,... 55 7e-06
CP001365_1537(CP001365|pid:none) Halorubrum lacusprofundi ATCC 4... 55 7e-06
AE017261_1322(AE017261|pid:none) Picrophilus torridus DSM 9790, ... 54 1e-05
BA000001_471(BA000001|pid:none) Pyrococcus horikoshii OT3 DNA, c... 54 1e-05
CP000660_2083(CP000660|pid:none) Pyrobaculum arsenaticum DSM 135... 54 1e-05
CP000386_1960(CP000386|pid:none) Rubrobacter xylanophilus DSM 99... 54 2e-05
CP001401_1592(CP001401|pid:none) Sulfolobus islandicus M.16.27, ... 52 6e-05
CP001400_1487(CP001400|pid:none) Sulfolobus islandicus M.14.25, ... 52 6e-05
AE006641_430(AE006641|pid:none) Sulfolobus solfataricus P2, comp... 52 6e-05
CP000875_100(CP000875|pid:none) Herpetosiphon aurantiacus ATCC 2... 51 8e-05
AM778953_34(AM778953|pid:none) Microcystis aeruginosa PCC 7806 g... 51 8e-05
AF068771_1(AF068771|pid:none) Synechocystis PCC9413 beta-phycocy... 50 1e-04
CP000828_2378(CP000828|pid:none) Acaryochloris marina MBIC11017,... 50 2e-04
AM746676_6824(AM746676|pid:none) Sorangium cellulosum 'So ce 56'... 50 2e-04
AE009441_1705(AE009441|pid:none) Pyrobaculum aerophilum str. IM2... 49 3e-04
BA000045_1364(BA000045|pid:none) Gloeobacter violaceus PCC 7421 ... 49 4e-04
CP000393_3870(CP000393|pid:none) Trichodesmium erythraeum IMS101... 49 5e-04
CP001287_546(CP001287|pid:none) Cyanothece sp. PCC 8801, complet... 48 7e-04
BA000011_572(BA000011|pid:none) Thermoplasma volcanium GSS1 DNA,... 48 0.001
CP000504_1864(CP000504|pid:none) Pyrobaculum islandicum DSM 4184... 47 0.002
CP000117_949(CP000117|pid:none) Anabaena variabilis ATCC 29413, ... 47 0.002
CP000806_4438(CP000806|pid:none) Cyanothece sp. ATCC 51142 circu... 47 0.002
CP000910_477(CP000910|pid:none) Renibacterium salmoninarum ATCC ... 46 0.003
AM087123_19(AM087123|pid:none) Acidianus filamentous virus 8, pa... 46 0.003
CP000431_1653(CP000431|pid:none) Rhodococcus jostii RHA1, comple... 44 0.013
AM087122_17(AM087122|pid:none) Acidianus filamentous virus 7, pa... 44 0.013
AF440571_22(AF440571|pid:none) Sulfolobus islandicus filamentous... 43 0.022
CP001403_874(CP001403|pid:none) Sulfolobus islandicus Y.G.57.14,... 42 0.038
CP001402_787(CP001402|pid:none) Sulfolobus islandicus M.16.4, co... 42 0.049
CP000806_1351(CP000806|pid:none) Cyanothece sp. ATCC 51142 circu... 42 0.049
CP001400_688(CP001400|pid:none) Sulfolobus islandicus M.14.25, c... 42 0.049
AM087120_23(AM087120|pid:none) Acidianus filamentous virus 3, pa... 42 0.049
CP001399_752(CP001399|pid:none) Sulfolobus islandicus L.S.2.15, ... 42 0.049
AE001825_130(AE001825|pid:none) Deinococcus radiodurans R1 chrom... 40 0.14
CR628337_2498(CR628337|pid:none) Legionella pneumophila str. Len... 40 0.14
AE006914_901(AE006914|pid:none) Rickettsia conorii str. Malish 7... 40 0.19
CP000113_1842(CP000113|pid:none) Myxococcus xanthus DK 1622, com... 40 0.25
CP000409_370(CP000409|pid:none) Rickettsia canadensis str. McKie... 40 0.25
CP001291_3713(CP001291|pid:none) Cyanothece sp. PCC 7424, comple... 40 0.25
AL389953_1(AL389953|pid:none) Homo sapiens mRNA full length inse... 40 0.25
CP000766_937(CP000766|pid:none) Rickettsia rickettsii str. Iowa,... 40 0.25
CP001227_442(CP001227|pid:none) Rickettsia peacockii str. Rustic... 40 0.25
BC035183_1(BC035183|pid:none) Homo sapiens chromosome 9 open rea... 40 0.25
CP000917_137(CP000917|pid:none) Enterobacteria phage EPS7, compl... 39 0.42
CP000716_31(CP000716|pid:none) Thermosipho melanesiensis BI429, ... 39 0.42
CP000683_661(CP000683|pid:none) Rickettsia massiliae MTU5, compl... 39 0.55
AF217319_1(AF217319|pid:none) Mus musculus putative repair and r... 39 0.55
CP001132_1992(CP001132|pid:none) Acidithiobacillus ferrooxidans ... 39 0.55
CP001101_684(CP001101|pid:none) Chlorobium phaeobacteroides BS1,... 38 0.71
AK082850_1(AK082850|pid:none) Mus musculus ES cells cDNA, RIKEN ... 38 0.71
CP001322_3273(CP001322|pid:none) Desulfatibacillum alkenivorans ... 38 0.71
CP001097_1304(CP001097|pid:none) Chlorobium limicola DSM 245, co... 38 0.71
CP000505_644(CP000505|pid:none) Thermofilum pendens Hrk 5, compl... 38 0.71
CP001145_273(CP001145|pid:none) Coprothermobacter proteolyticus ... 38 0.71
CU928162_275(CU928162|pid:none) Escherichia coli ED1a chromosome... 38 0.71
AP009552_337(AP009552|pid:none) Microcystis aeruginosa NIES-843 ... 38 0.71
AB366653_154(AB366653|pid:none) Ralstonia phage RSL1 DNA, comple... 38 0.93
AJ749949_244(AJ749949|pid:none) Francisella tularensis subsp. tu... 38 0.93
AE016877_1725(AE016877|pid:none) Bacillus cereus ATCC 14579, com... 38 0.93
CP000608_1491(CP000608|pid:none) Francisella tularensis subsp. t... 38 0.93
CP000437_125(CP000437|pid:none) Francisella tularensis subsp. ho... 38 0.93
AP008230_4376(AP008230|pid:none) Desulfitobacterium hafniense Y5... 38 0.93
AM233362_167(AM233362|pid:none) Francisella tularensis subsp. ho... 38 0.93
CP000482_1295(CP000482|pid:none) Pelobacter propionicus DSM 2379... 37 1.2
AP009049_2267(AP009049|pid:none) Clostridium kluyveri NBRC 12016... 37 1.2
CP000439_84(CP000439|pid:none) Francisella tularensis subsp. nov... 37 1.2
AE010299_1562(AE010299|pid:none) Methanosarcina acetivorans str.... 37 1.6
AP006878_929(AP006878|pid:none) Thermococcus kodakarensis KOD1 D... 37 1.6
GM017008_201(GM017008|pid:none) Sequence 1838 from Patent EP1923... 37 1.6
(Q5UQ46) RecName: Full=Putative ATP-dependent RNA helicase L396;... 37 1.6
CP000053_378(CP000053|pid:none) Rickettsia felis URRWXCal2, comp... 37 1.6
CP001110_1043(CP001110|pid:none) Pelodictyon phaeoclathratiforme... 37 1.6
AP009552_236(AP009552|pid:none) Microcystis aeruginosa NIES-843 ... 37 2.1
CP001110_722(CP001110|pid:none) Pelodictyon phaeoclathratiforme ... 37 2.1
CP000155_6060(CP000155|pid:none) Hahella chejuensis KCTC 2396, c... 37 2.1
AE017263_315(AE017263|pid:none) Mesoplasma florum L1 complete ge... 37 2.1
CP001185_5(CP001185|pid:none) Thermosipho africanus TCF52B, comp... 37 2.1
DQ223541_1(DQ223541|pid:none) Acyrthosiphon pisum sucrase (S1) m... 37 2.1
CU633900_1017(CU633900|pid:none) Podospora anserina genomic DNA ... 37 2.1
BA000008_847(BA000008|pid:none) Chlamydophila pneumoniae J138 ge... 37 2.1
CP000847_849(CP000847|pid:none) Rickettsia akari str. Hartford, ... 37 2.1
CP000909_2646(CP000909|pid:none) Chloroflexus aurantiacus J-10-f... 37 2.1
CP000498_551(CP000498|pid:none) Pichia stipitis CBS 6054 chromos... 36 2.7
BX294141_310(BX294141|pid:none) Rhodopirellula baltica SH 1 comp... 36 2.7
T17644(T17644) hypothetical protein A153R - Chlorella virus PBCV... 36 2.7
EF101928_643(EF101928|pid:none) Acanthocystis turfacea Chlorella... 36 2.7
BA000001_214(BA000001|pid:none) Pyrococcus horikoshii OT3 DNA, c... 36 2.7
CP001281_295(CP001281|pid:none) Thauera sp. MZ1T, complete genome. 36 2.7
CP000112_2489(CP000112|pid:none) Desulfovibrio desulfuricans G20... 36 3.5
DQ890022_206(DQ890022|pid:none) Paramecium bursaria Chlorella vi... 36 3.5
CP001185_250(CP001185|pid:none) Thermosipho africanus TCF52B, co... 36 3.5
CP000117_3259(CP000117|pid:none) Anabaena variabilis ATCC 29413,... 36 3.5
CP000702_1740(CP000702|pid:none) Thermotoga petrophila RKU-1, co... 36 3.5
AY692264_108(AY692264|pid:none) Bacteriophage T5 strain st0 dele... 36 3.5
CP000033_54(CP000033|pid:none) Lactobacillus acidophilus NCFM, c... 36 3.5
AE009950_126(AE009950|pid:none) Pyrococcus furiosus DSM 3638, co... 36 3.5
AL021475_3(AL021475|pid:none) Caenorhabditis elegans YAC Y32F6B,... 35 4.6
AE017197_557(AE017197|pid:none) Rickettsia typhi str. Wilmington... 35 4.6
DQ491001_201(DQ491001|pid:none) Paramecium bursaria chlorella vi... 35 4.6
AL021475_2(AL021475|pid:none) Caenorhabditis elegans YAC Y32F6B,... 35 4.6
DQ491003_191(DQ491003|pid:none) Paramecium bursaria Chlorella vi... 35 4.6
DQ003638_111(DQ003638|pid:none) Listeria phage A511, complete ge... 35 4.6
AF178536_1(AF178536|pid:none) Caenorhabditis elegans EGL-9 (egl-... 35 4.6
DQ491002_203(DQ491002|pid:none) Paramecium bursaria Chlorella vi... 35 4.6
FJ822135_136(FJ822135|pid:none) Lactobacillus phage Lb338-1, com... 35 4.6
DQ004855_42(DQ004855|pid:none) Listeria bacteriophage P100, comp... 35 4.6
CP000806_894(CP000806|pid:none) Cyanothece sp. ATCC 51142 circul... 35 6.0
CP000517_52(CP000517|pid:none) Lactobacillus helveticus DPC 4571... 35 6.0
AE004092_485(AE004092|pid:none) Streptococcus pyogenes M1 GAS, c... 35 6.0
CP000554_2812(CP000554|pid:none) Prochlorococcus marinus str. MI... 35 6.0
BX548175_2777(BX548175|pid:none) Prochlorococcus marinus MIT9313... 35 6.0
CP000261_565(CP000261|pid:none) Streptococcus pyogenes MGAS2096,... 35 6.0
BX548174_855(BX548174|pid:none) Prochlorococcus marinus MED4 com... 35 6.0
CP000771_996(CP000771|pid:none) Fervidobacterium nodosum Rt17-B1... 35 7.9
CP000671_715(CP000671|pid:none) Haemophilus influenzae PittEE, c... 35 7.9
AE017198_39(AE017198|pid:none) Lactobacillus johnsonii NCC 533, ... 35 7.9
CP001287_283(CP001287|pid:none) Cyanothece sp. PCC 8801, complet... 35 7.9
CP000057_1663(CP000057|pid:none) Haemophilus influenzae 86-028NP... 35 7.9
CP000413_33(CP000413|pid:none) Lactobacillus gasseri ATCC 33323,... 35 7.9
(P45128) RecName: Full=Transcription-repair-coupling factor; ... 35 7.9
CP000903_4530(CP000903|pid:none) Bacillus weihenstephanensis KBA... 35 7.9
AP009552_2321(AP009552|pid:none) Microcystis aeruginosa NIES-843... 35 7.9
>EF676215_1(EF676215|pid:none) Picea sitchensis clone WS0271_O13
unknown mRNA.
Length = 772
Score = 251 bits (640), Expect(2) = e-122
Identities = 117/162 (72%), Positives = 140/162 (86%), Gaps = 1/162 (0%)
Frame = +2
Query: 134 GGRRSAESLKIMNEITNREWGLVLLDEVHVVPAAMFRKVLTVTKAHCKLGLTATLLREDE 313
GG+RS ES KI+ EI NREWGL+L+DEVHVVPA MFRKV+++TK+HCKLGLTATL+REDE
Sbjct: 385 GGKRSEESEKIIEEIRNREWGLLLMDEVHVVPAHMFRKVISITKSHCKLGLTATLVREDE 444
Query: 314 KIQDLNFLIGPKLYEANWLDLQKAGFLANVSCSEVWCPMTAEFYKEYLINDSQGKKKLLY 493
+I DLNFLIGPKLYEANWLDL K GF+ANV C+EVWCPMT EF+ EYL ++ KK+ LY
Sbjct: 445 RITDLNFLIGPKLYEANWLDLVKGGFIANVQCAEVWCPMTREFFAEYLKKENSKKKQALY 504
Query: 494 TMNPNKFRACEYLIRFHE-QRGDKIIVFSDNVYALQKVCQRI 616
MNPNKFRACE+LIRFHE QRGDKIIVF+DN++AL + ++
Sbjct: 505 VMNPNKFRACEFLIRFHEQQRGDKIIVFADNLFALTEYAMKL 546
Score = 214 bits (544), Expect(2) = e-122
Identities = 123/210 (58%), Positives = 140/210 (66%), Gaps = 7/210 (3%)
Frame = +3
Query: 600 KYAKGLGRYFIYGPTSGHERMSILSKFQHDPTVRTIFISKVGDTSIDIPEATVIIQVSSH 779
+YA L + IYG TS ER IL F+H P V T+F+SKVGD SIDIPEA VIIQ+SSH
Sbjct: 541 EYAMKLRKPMIYGATSHSERTRILYAFKHSPDVNTVFLSKVGDNSIDIPEANVIIQISSH 600
Query: 780 YGSRRQEAQRLGRILRPKPKSDGL-------YNAFFYSLVSKDTQEMYYSTKRQQFLIDQ 938
GSRRQEAQRLGRILR K K YNAFFYSLVS DTQEMYYSTKRQQFLIDQ
Sbjct: 601 AGSRRQEAQRLGRILRAKGKHQDRMAGGKEEYNAFFYSLVSNDTQEMYYSTKRQQFLIDQ 660
Query: 939 GYSFKVISELPGIDQEVNLKYSSKQDQLDLLAQVLGEGEDSGKNEILEEDFDDITRGAKK 1118
GYSFKVI+ LP D +L Y + +DQL LL +VL G+D+ E LEED DDIT
Sbjct: 661 GYSFKVITSLPPPDTGADLNYHTLEDQLALLTKVLNAGDDAVGLEQLEEDADDITL---- 716
Query: 1119 SKSSAPTVSRTTGGSTRALSGGNDMNYMEY 1208
+R + GS A+SG + M YMEY
Sbjct: 717 ------LKARRSVGSMSAMSGASGMVYMEY 740
Lambda K H
0.318 0.134 0.401
Gapped
Lambda K H
0.267 0.0410 0.140
Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Sequences: 3204285
Number of Hits to DB: 2,000,732,113
Number of extensions: 38192300
Number of successful extensions: 97059
Number of sequences better than 10.0: 220
Number of HSP's gapped: 96828
Number of HSP's successfully gapped: 341
Length of query: 443
Length of database: 1,040,966,779
Length adjustment: 132
Effective length of query: 311
Effective length of database: 618,001,159
Effective search space: 192198360449
Effective search space used: 192198360449
Neighboring words threshold: 12
Window for multiple hits: 40
X1: 16 ( 7.3 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 41 (21.7 bits)
S2: 32 (16.9 bits)
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