Dictyostelium discoideum cDNA Contig-U11403-1

Assembled

Chromosomal Location of Contig-U11403-1

Sequence Contig-U11403-1

ACTGTTGGCC TACTGGNATA TTTTACCACA CCCGAAAACA TATAATTTTA
TTATATTTTT TGTTTTTTTT TTTTCTTCAA ATAAATTNCN TTACCAAAAA
TAAAATAAAA TAAAAAAAAA A--------- -TTGGTGGTA GACGTTCAGC
AGAATCGTTA AAGATTATGA ATGAAATTAC CAATAGGGAA TGGGGTTTGG
TATTATTGGA CGAGGTACAT GTAGTACCAG CAGCAATGTT TAGAAAGGTT
TTAACAGTGA CAAAAGCCCA TTGTAAATTG GGTTTAACAG CAACATTGTT
ACGTGAAGAT GAAAAGATTC AAGATTTGAA TTTCCTTATT GGTCCAAAAC
TTTATGAGGC AAATTGGTTG GATTTACAAA AAGCAGGTTT CCTTGCAAAT
GTTTCATGTT CAGAAGTTTG GTGTCCAATG ACAGCGGAAT TTTATAAAGA
ATATTTAATC AATGATTCTC AAGGAAAGAA GAAACTTCTA TATACAATGA
ATCCAAATAA ATTCCGTGCT TGTGAATATT TAATTAGATT CCATGAACAA
AGAGGTGATA AGATCATTGT TTTCTCTGAT AATGTTTATG CACTTCAAAA
AGTATGCCAA AGGATTGGGT AGATATTTCA TTTATGGACC AACATCAGGC
CATGAAAGAA TGAGTATTCT CTCGAAATTT CAACATGATC CAACCGTAAG
AACCATTTTC ATTTCAAAGG TTGGTGATAC CTCTATCGAT ATTCCAGAGG
CAACCGTTAT CATTCAAGTT TCATCACATT ATGGTTCACG TCGTCAAGAG
GCACAACGTT TAGGTCGTAT TCTTCGTCCA AAACCAAAAT CTGATGGTCT
TTACAATGCT TTCTTTTATT CTTTGGTTTC AAAAGATACT CAAGAAATGT
ATTACAGTAC AAAGAGACAA CAGTTTTTAA TTGATCAAGG TTATAGTTTT
AAGGTCATTT CAGAGTTACC TGGTATTGAT CAAGAAGTAA ACTTAAAATA
TTCTTCAAAA CAAGATCAAC TCGATCTATT GGCTCAAGTA TTGGGTGAAG
GTGAAGATAG TGGTAAAAAT GAAATTTTAG AAGAAGATTT CGATGATATT
ACTCGTGGTG CAAAGAAATC AAAATCTTCT GCTCCAACAG TTTCAAGAAC
TACTGGTGGT TCAACTAGAG CATTATCTGG TGGTAATGAT ATGAACTATA
TGGAATATCA AGCTCCTGCA ATTTATACAA AGTATTCCAA CTCACACATG
CATTATTTAA ACAACGTGCT AAAAATAAAC AATAAAAAAT AAATCAAAAC
AAATAAATCA AAAAAATAAA TCAAAAAAAA A

Translated Amino Acid Sequence Contig-U11403-1

llaywxilphpktynfiiffvfffssnkxxyqk*NKIKKK---

---GGRRSAESLKIMNEITNREWGLVLLDEVHVVPAAMFRKVLTVTKAHCKLGLTATLLR
EDEKIQDLNFLIGPKLYEANWLDLQKAGFLANVSCSEVWCPMTAEFYKEYLINDSQGKKK
LLYTMNPNKFRACEYLIRFHEQRGDKIIVFSDNVYALQKVCQRIG*ifhlwtnirp*kne
ysleist*snrknhfhfkgw*ylyrysrgnryhssfitlwftssrgttfrsysssktki*
wslqcfllffgfkrysrnvlqykettvfn*srl*f*ghfrvtwy*srsklkiffktrstr
sigssig*r*r*w*k*nfrrrfr*yyswckeikifcsnsfknywwfn*siiww**yelyg
issscnlykvfqlthalfkqraknkq*kinqnk*ikkinqkk

Homology Contig-U11403-1 vs CSM-Contig

Sequences producing significant alignments:                        (bits)  Value


Contig-U11403-1 (Contig-U11403-1Q) /CSM_Contig/Conti...  2256  0.0
Contig-U12703-1 (Contig-U12703-1Q) /CSM_Contig/Conti...    42  0.002
Contig-U12149-1 (Contig-U12149-1Q) /CSM_Contig/Conti...    42  0.002
Contig-U11481-1 (Contig-U11481-1Q) /CSM_Contig/Conti...    40  0.006
Contig-U13189-1 (Contig-U13189-1Q) /CSM_Contig/Conti...    38  0.024
Contig-U11930-1 (Contig-U11930-1Q) /CSM_Contig/Conti...    38  0.024
Contig-U02113-1 (Contig-U02113-1Q) /CSM_Contig/Conti...    38  0.024
Contig-U02066-1 (Contig-U02066-1Q) /CSM_Contig/Conti...    38  0.024
Contig-U13600-1 (Contig-U13600-1Q) /CSM_Contig/Conti...    36  0.094
Contig-U12155-1 (Contig-U12155-1Q) /CSM_Contig/Conti...    36  0.094

Homology Contig-U11403-1 vs DNA

Sequences producing significant alignments:                  (bits) Value  N


(BJ355194) Dictyostelium discoideum cDNA clone:dda56d04, 3' ...  1334   0.0    1
(BJ444850) Dictyostelium discoideum cDNA clone:ddv57k14, 3' ...  1277   0.0    3
(BJ386513) Dictyostelium discoideum cDNA clone:ddc58b16, 3' ...  1275   0.0    3
(BJ442111) Dictyostelium discoideum cDNA clone:ddv48j22, 3' ...  1271   0.0    3
(U77065) Dictyostelium discoideum DNA helicase homolog (repB...  1249   0.0    4
(BJ386486) Dictyostelium discoideum cDNA clone:ddc58l09, 3' ...  1249   0.0    4
(BJ385588) Dictyostelium discoideum cDNA clone:ddc55p07, 3' ...  1249   0.0    4
(BJ383030) Dictyostelium discoideum cDNA clone:ddc46k18, 3' ...  1249   0.0    4
(BJ382641) Dictyostelium discoideum cDNA clone:ddc45m08, 3' ...  1249   0.0    4
(BJ379371) Dictyostelium discoideum cDNA clone:ddc34l18, 3' ...  1249   0.0    4

Homology Contig-U11403-1 vs Protein

Sequences producing significant alignments:                      (bits) Value


EF676215_1(EF676215|pid:none) Picea sitchensis clone WS0271_O13 ...   251   e-122
CR382137_378(CR382137|pid:none) Debaryomyces hansenii strain CBS...   233   e-120
(Q9FUG4) RecName: Full=DNA repair helicase XPB2;          EC=3.6...   249   e-119
AB006707_6(AB006707|pid:none) Arabidopsis thaliana genomic DNA, ...   249   e-119
FM992695_260(FM992695|pid:none) Candida dubliniensis CD36 chromo...   232   e-119
(Q38861) RecName: Full=DNA repair helicase XPB1;          EC=3.6...   249   e-118
AB006707_7(AB006707|pid:none) Arabidopsis thaliana genomic DNA, ...   249   e-118
CU928179_600(CU928179|pid:none) Zygosaccharomyces rouxii strain ...   229   e-118
L01414_1(L01414|pid:none) Saccharomyces cerevisiae DNA helicase ...   230   e-117
(O00835) RecName: Full=TFIIH basal transcription factor complex ...   418   e-116