Dictyostelium discoideum cDNA Contig-U11395-1

Assembled

Chromosomal Location of Contig-U11395-1

Sequence Contig-U11395-1

AGCACCAGAT TATTATTATA TATTAGTTAA AAATAAATTT GAAATCAGTG
ATAGTTTCAA TAGAAATATA GGAAGGAATA CAATAAATGT CAACAGTTCT
GGATTANATT TCAAAACTGT AATTAGTATT TTAGAGAATG CTGACCATCA
AATGTTTGAT ATTTGGGTTT ATCCTTATGT TGACACAGTG CCTTGCCTTA
TTGAAATGCT TACTGAATCT GATATGAAAA CTATGTTATT TAGAAAATGT
GAAAAGGGTA ATCCATTTGA CGAAGAAAGA ATCAAACAAT TATACATAGA
ATTGAAACGT GACTCTTATT ATAATTATAA TAGACATTTA AATCCTAAAC
TTGTACTAAC NCCATTCATT CAAGCTTTGA GATACTTCTT TTTAATTAAC
GCTATACTTA ATGATGATTC TGAAAAGATT TATTCAAGTT GGTATAATCT
TGGNCATTAT TTTGATTATA CTCAAAAATC AAGANAGATT CGTTAGAGAG
ATTTTACCAC TTGCAAATCT TTGTAAACAC ATCTCATC-- --------NN
NNNNNNNTAA TACAGCATCT GATACATCAT TAAAAAGTTA TAATGTTATA
GAGAAACCAG ATAATTTAGA TCCAGGATGA TATTGAAAAA CAAATTAAAC
TTATAAAAGC TGTAATTAAG AAATTAAAAA ATCCATTTGC ATTTGATATT
CAATTCTTTC ATAATAATAA TCAATTACAA TATTATTTAC CATTGTTTAA
TTGGATTTTA AATACTCCAT TCTTAAGAAA CAAAGTTAGT AAAGGTATTG
ATATACTTTA TTATGTTTGT GGTAGATCTA TAGAATTCCT TCAAATCTAT
AAAGATAATT TTAAATTCCA TTTATTTGAT TCAACAATCT ATGATTTAAT
TCTTCAAAAT GGTGATACTG AATTCATTGG TTTATTATTT GATGAATATT
ATAATGGTTC CCCACCATCA CAACCACCAT CATCATCATC ATCACAATCT
TATAAAAACA ATTGTGAAGA ATTCAGAAAA AAGATAAAAC TAATGTTACA
ACATTCAGTT TTAAAAGGTC ATCTTTCAGT TGCTCAATTT TTACATGATA
ATAAAATTGG AAAACAATAT TTAGAAGAGC TTGTAAATCA AAATTTTGCA
GACTTAATTT CAGAGGATCG TTTGGAAATT GTTGAATTCC TTTATCAAAA
TAATTATATC TCAATAACNG ATGTTGATTA TATTGTAAAT TTATTTAATA
ATAACAAACC AAAAAAA

Translated Amino Acid Sequence Contig-U11395-1

hqiiiiy*lkinlksvivsiei*egiq*mstvldxiskl*lvf*rmltikclifgfilml
tqclallkcllnli*klcylenvkrvihltkkesnnyt*n*nvtliiiiidi*ilnly*x
hsfkl*dtsf*LTLYLMMILKRFIQVGIILXIILIILKNQXRFVREILPLANLCKHISSX
X---

---NTASDTSLKSYNVIEKPDNLDPG*y*ktn*tykscn*eikksici*ysils***sit
ilftiv*ldfkysilkkqs**ry*ytllclw*iyripsnl*r*f*ipfi*fnnl*fnssk
w*y*ihwfii**il*wfptitttiiiiitil*kql*riqkkdktnvttfsfkrssfscsi
ft***nwktifrrackskfcrlnfrgsfgnc*iplsk*lylnnxc*lyckfi***qtkk

Homology Contig-U11395-1 vs CSM-Contig

Sequences producing significant alignments:                        (bits)  Value


Contig-U11395-1 (Contig-U11395-1Q) /CSM_Contig/Conti...  1043  0.0
Contig-U09823-1 (Contig-U09823-1Q) /CSM_Contig/Conti...    40  0.006
Contig-U08828-1 (Contig-U08828-1Q) /CSM_Contig/Conti...    40  0.006
Contig-U05220-1 (Contig-U05220-1Q) /CSM_Contig/Conti...    40  0.006
Contig-U14573-1 (Contig-U14573-1Q) /CSM_Contig/Conti...    36  0.090
Contig-U12401-1 (Contig-U12401-1Q) /CSM_Contig/Conti...    36  0.090
Contig-U12332-1 (Contig-U12332-1Q) /CSM_Contig/Conti...    36  0.090
Contig-U11131-1 (Contig-U11131-1Q) /CSM_Contig/Conti...    36  0.090
Contig-U08130-1 (Contig-U08130-1Q) /CSM_Contig/Conti...    36  0.090
Contig-U13628-1 (Contig-U13628-1Q) /CSM_Contig/Conti...    32  1.4

Homology Contig-U11395-1 vs DNA

Sequences producing significant alignments:                  (bits) Value  N


(BJ352798) Dictyostelium discoideum cDNA clone:dda47o21, 3' ...   585   0.0    3
(BJ405562) Dictyostelium discoideum cDNA clone:dds32i06, 3' ...   585   0.0    4
(BJ334824) Dictyostelium discoideum cDNA clone:dda47o21, 5' ...  1043   0.0    1
(AL844508) Plasmodium falciparum 3D7 chromosome 9.                 36   5e-05  14
(AL844504) Plasmodium falciparum 3D7 chromosome 5.                 42   7e-04  15
(AL844506) Plasmodium falciparum 3D7 chromosome 7.                 36   0.002  15
(AE014187) Plasmodium falciparum 3D7 chromosome 14, complete...    36   0.007  16
(CP001083) Clostridium botulinum Ba4 str. 657, complete genome.    36   0.011  23
(AE013218) Buchnera aphidicola str. Sg (Schizaphis graminum)...    34   0.011  21
(AE017263) Mesoplasma florum L1 complete genome.                   34   0.012  20

Homology Contig-U11395-1 vs Protein

Sequences producing significant alignments:                      (bits) Value


(Q54Z20) RecName: Full=Putative calcium up-regulated protein J;        39   0.30
AF458173_1(AF458173|pid:none) Mus musculus clone B6F3MH130 immun...    38   0.88
CR380955_267(CR380955|pid:none) Candida glabrata strain CBS138 c...    37   1.1
AB121655_1(AB121655|pid:none) Mus musculus mRNA for immunoglobul...    37   1.5
AM293756_1(AM293756|pid:none) Rattus norvegicus partial mRNA for...    36   3.3
AF065378_1(AF065378|pid:none) Mus musculus clone W1GT422 immunog...    36   3.3
(P01755) RecName: Full=Ig heavy chain V region S43; Flags: Precu...    36   3.3
AF028665_1(AF028665|pid:none) Mus musculus clone 61GU0203 immuno...    36   3.3
U16687_1(U16687|pid:none) Mus musculus Ig heavy chain leader and...    36   3.3
AL844506_52(AL844506|pid:none) Plasmodium falciparum 3D7 chromos...    31   3.9