<Clone: Contig-U11394-1> <SEQ> <Translated> <CONTIG> <DNA> <Protein> <PSORT> <MOTIF>

Dictyostelium discoideum cDNA Contig-U11394-1

Dictyostelium discoideum cDNA Project Home

Assembled

Chromosomal Location of Contig-U11394-1

< more Chromosomal info >

Chromosome Number 2
Length 8467578
Start Poin 1,466,640
End Point 1,467,948
Strand PLUS

Sequence Contig-U11394-1

ATGTATCATA TGCCTCAAAG TATTGGGTCA ACACATATTA TTTTACCAAT
TAAAGATATT ATTTCAATTT CTAAAAAGAA TTCAGTATAT TTATTCCCAA
ATGCAATTGA GATTATAAAT CAAAAAGATC ATAAATACTT TTTTTCAGCA
TTTTTATCAA G--------- -NNNNNNNNN AAATTCACTA AATCGGTTTG
GGGTCTATCT TCAATGATTC AAAAAACCGC TTTACAAGGA AATAAAGAGT
TTTTCGTACT TTGGAATACA ATGGTTAGAA ATCAAATTGA AACTTATGTT
TACAATAAAA TGAAAGAATT AAAGAAACCA ATAGTTGTTC CAGTTTCAAA
TGTTAATGCA TCTTCAACTA ATACAACTCC AATTAAAAAA CCTGTAATTG
TAGCTTCTGC TTCAGCTGGT TCATTACCAA TTAATTCACA ACAACCACAA
CAACAACAAC CAGTACAACC ACAACAAGTA CAACCACAAC AACCAGTACA
ATCCCAACAA CAATCTCAAC AAGTACAACA ACAACAACAA CAACAACAAC
AAGTACAACA ACCACAACAA GTACAACAAC CACAACAACA AGTTCAACAA
GCACAAAGAG TAGTACAATC AGTTTCACCA ATTTCAGCTA TAACTTCAAC
AACAACAACA ACAACAACAC CAGTTTCATC CCAATCATCA ATTCAAACAA
CACCTTCAGT AGTAGTAGCA ACTACAACTC AATCAGTATT TACAATTGAG
GAAGGTGAAA CTCTTAGTTC AACAATATGG AAGAAAATGT CTATTATTGA
AAAGGGTATT TTAGCAGGCG TATTTTTCTT ATTTTTATCA TTACTAATTG
GATTAACCAT TGGAATCGTT TCAAATTCAA ATTCATCAAG ATCATTAAAT
AATCAATTGT ATAGATTCTC AGATTCATTG ATACTATTAG ATTCTAGAGT
AAATTCATTG GCAACACAAA CTCCACCAGA TGATGGTAAA GTAGTATACA
CTTCAAATAT TGGTAAAGAT AGAATTACCG CTTTAAGAGA TCGATTAGAA
TTGGCAAATT CCTTATTGAT GAGAGCTCAA AGTATGGTCT CAACACTCCA
AGCCGAATTA TCATTAGAGG ATATGAAATC TACAAGATTC GAAAATTATA
ATTATGAAAA TAACAATAGT AGTGGTTTAT TTGGTCCTAT ATTTCTTACA
ATATTAATTG CCTCTGCTTC TATTGTTTTT TATAAATTTT ATTTGAAATA
AATAAAATAA AATAAAATAT TAATAAAATA AAATAAAATG AAAAATAAGA
AATGACAAAC AAATAAATTT TTAA

Translated Amino Acid Sequence Contig-U11394-1

<All Frames> 
MYHMPQSIGSTHIILPIKDIISISKKNSVYLFPNAIEIINQKDHKYFFSAFLSXXX---

---KFTKSVWGLSSMIQKTALQGNKEFFVLWNTMVRNQIETYVYNKMKELKKPIVVPVSN
VNASSTNTTPIKKPVIVASASAGSLPINSQQPQQQQPVQPQQVQPQQPVQSQQQSQQVQQ
QQQQQQQVQQPQQVQQPQQQVQQAQRVVQSVSPISAITSTTTTTTTPVSSQSSIQTTPSV
VVATTTQSVFTIEEGETLSSTIWKKMSIIEKGILAGVFFLFLSLLIGLTIGIVSNSNSSR
SLNNQLYRFSDSLILLDSRVNSLATQTPPDDGKVVYTSNIGKDRITALRDRLELANSLLM
RAQSMVSTLQAELSLEDMKSTRFENYNYENNNSSGLFGPIFLTILIASASIVFYKFYLK*
ik*nkilik*nkmknkk*qtnkfl


Homology Contig-U11394-1 vs CSM-Contig

<more CONTIG info> 
Sequences producing significant alignments:                        (bits)  Value


Contig-U11394-1 (Contig-U11394-1Q) /CSM_Contig/Conti...  1142  0.0
Contig-U12716-1 (Contig-U12716-1Q) /CSM_Contig/Conti...    38  0.024
Contig-U12492-1 (Contig-U12492-1Q) /CSM_Contig/Conti...    38  0.024
Contig-U11838-1 (Contig-U11838-1Q) /CSM_Contig/Conti...    38  0.024
Contig-U11767-1 (Contig-U11767-1Q) /CSM_Contig/Conti...    38  0.024
Contig-U11706-1 (Contig-U11706-1Q) /CSM_Contig/Conti...    38  0.024
Contig-U08910-1 (Contig-U08910-1Q) /CSM_Contig/Conti...    38  0.024
Contig-U01321-1 (Contig-U01321-1Q) /CSM_Contig/Conti...    38  0.024
Contig-U14584-1 (Contig-U14584-1Q) /CSM_Contig/Conti...    36  0.094
Contig-U13443-1 (Contig-U13443-1Q) /CSM_Contig/Conti...    36  0.094


Homology Contig-U11394-1 vs DNA

<more DNA info> 
Sequences producing significant alignments:                  (bits) Value  N


(BJ383997) Dictyostelium discoideum cDNA clone:ddc47k24, 3' ...  1102   0.0    2
(BJ352406) Dictyostelium discoideum cDNA clone:dda46l14, 3' ...  1102   0.0    2
(BJ381951) Dictyostelium discoideum cDNA clone:ddc43n10, 3' ...   906   0.0    1
(AU062076) Dictyostelium discoideum slug cDNA, clone SLH484.      460   0.0    4
(AU060098) Dictyostelium discoideum slug cDNA, clone SLA306.      509   e-140  1
(BJ440046) Dictyostelium discoideum cDNA clone:ddv42p12, 3' ...   452   e-122  1
(BJ334499) Dictyostelium discoideum cDNA clone:dda46l14, 5' ...   317   6e-82  1
(AU040030) Dictyostelium discoideum slug cDNA, clone SLH484.      305   2e-78  1
(GR569892) CBTF772.b1 CBTF Dictyostelium purpureum 12 hr veg...    96   3e-24  2
(GR567875) CBTF3455.b1 CBTF Dictyostelium purpureum 12 hr ve...    96   3e-24  2


Homology Contig-U11394-1 vs Protein

<more Protein info> 
Sequences producing significant alignments:                      (bits) Value


AC116921_9(AC116921|pid:none) Dictyostelium discoideum chromosom...   270   1e-70
AC116921_4(AC116921|pid:none) Dictyostelium discoideum chromosom...    46   0.003
AF000194_5(AF000194|pid:none) Caenorhabditis elegans cosmid ZC32...    38   0.93


<Clone: Contig-U11394-1> <SEQ> <Translated> <CONTIG> <DNA> <Protein> <PSORT> <MOTIF>

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