Homology Contig-U11341-1 vs DNA
Query= Contig-U11341-1 (Contig-U11341-1Q) /CSM_Contig/Contig-U11341-1Q.Seq.d
(1488 letters)
Database: ddbj_A
108,600,042 sequences; 106,710,029,556 total letters
Searching..................................................done
Score E
Sequences producing significant alignments: (bits) Value N
(BJ446726) Dictyostelium discoideum cDNA clone:ddv63l13, 3' ... 819 0.0 2
(BJ408400) Dictyostelium discoideum cDNA clone:dds45o16, 3' ... 819 0.0 2
(BJ357570) Dictyostelium discoideum cDNA clone:dda63p22, 3' ... 819 0.0 2
(BJ353014) Dictyostelium discoideum cDNA clone:dda48n18, 3' ... 819 0.0 2
(BJ350994) Dictyostelium discoideum cDNA clone:dda41m17, 3' ... 819 0.0 2
(AF474341) Dictyostelium discoideum ABC transporter ABCC.9 (... 773 0.0 7
(BJ349246) Dictyostelium discoideum cDNA clone:dda35j19, 3' ... 773 0.0 3
(BJ403448) Dictyostelium discoideum cDNA clone:dds25m01, 3' ... 773 0.0 3
(BJ351235) Dictyostelium discoideum cDNA clone:dda42b18, 3' ... 773 0.0 3
(BJ404769) Dictyostelium discoideum cDNA clone:dds29g13, 3' ... 765 0.0 3
(AF081586) Dictyostelium discoideum developmental protein DG... 468 0.0 5
(AU267711) Dictyostelium discoideum vegetative cDNA clone:VS... 773 0.0 2
(AU267206) Dictyostelium discoideum vegetative cDNA clone:VS... 773 0.0 1
(AU266926) Dictyostelium discoideum vegetative cDNA clone:VS... 773 0.0 1
(BJ403581) Dictyostelium discoideum cDNA clone:dds25h16, 3' ... 468 0.0 4
(BJ386151) Dictyostelium discoideum cDNA clone:ddc57f10, 3' ... 468 0.0 3
(AU266925) Dictyostelium discoideum vegetative cDNA clone:VS... 733 0.0 2
(AU267205) Dictyostelium discoideum vegetative cDNA clone:VS... 392 e-104 1
(BJ405567) Dictyostelium discoideum cDNA clone:dds32j06, 3' ... 325 3e-84 1
(BJ408842) Dictyostelium discoideum cDNA clone:dds47k04, 3' ... 176 8e-84 3
(GR572412) CBTG711.g1 CBTG Dictyostelium purpureum 12 hr veg... 139 3e-51 5
(GR569240) CBTF4444.g1 CBTF Dictyostelium purpureum 12 hr ve... 139 6e-50 5
(GR572411) CBTG711.b1 CBTG Dictyostelium purpureum 12 hr veg... 62 2e-12 4
(BJ391776) Dictyostelium discoideum cDNA clone:dds25m01, 5' ... 40 0.12 2
(AC236870) Ochotona princeps clone VMRC40-350M22, WORKING DR... 38 0.15 2
(BX546448) Human DNA sequence from clone RP11-509J10 on chro... 42 0.25 2
(CR381572) Human DNA sequence from clone bP-2168N6 on chromo... 42 0.54 3
(CU633741) Zebrafish DNA sequence from clone CH1073-279O1 in... 48 0.73 2
(CU694383) Zebrafish DNA sequence *** SEQUENCING IN PROGRESS... 48 1.0 1
(DY645527) PU3_plate55_A13 PU3 Prunus persica cDNA similar t... 48 1.0 1
(DY642402) PU3_plate21_O12 PU3 Prunus persica cDNA similar t... 48 1.0 1
(DN901110) naq15c10.y1 Zebrafish retina. Unnormalized (naq) ... 48 1.0 1
(EY339134) CAWY948.fwd CAWY Helobdella robusta Subtracted Ea... 48 1.0 1
(EY333375) CAWY565.fwd CAWY Helobdella robusta Subtracted Ea... 48 1.0 1
(EY326126) CAWY11394.fwd CAWY Helobdella robusta Subtracted ... 48 1.0 1
(EY325483) CAWY10962.fwd CAWY Helobdella robusta Subtracted ... 48 1.0 1
(EY323662) CAWX9128.fwd CAWX Helobdella robusta Primary Earl... 48 1.0 1
(EY255467) BF01029A2D12.f1 Normalized subtracted keck librar... 48 1.0 1
(AC166861) Oryctolagus cuniculus clone LB1-138C3, WORKING DR... 42 1.1 2
(AC182642) Pan troglodytes BAC clone CH251-216C21 from chrom... 42 1.9 3
(AC176555) Strongylocentrotus purpuratus clone R3-3076G4, WO... 36 2.1 2
(AC178296) Strongylocentrotus purpuratus clone R3-3096I4, WO... 36 2.1 2
(AC167081) Oryctolagus cuniculus clone LB1-252J17, WORKING D... 38 2.4 3
(CR589875) Zebrafish DNA sequence from clone DKEY-15K16 in l... 46 4.1 1
(AU028039) Rattus norvegicus, OTSUKA clone, OT81.10/938f05, ... 46 4.1 1
(AC123051) Mus musculus BAC clone RP24-366E4 from chromosome... 46 4.1 1
(AC121546) Mus musculus chromosome 6, clone RP24-537N12, com... 46 4.1 1
(AC006420) Arabidopsis thaliana chromosome 2 clone T12H3 map... 46 4.1 1
(FN357319) Schistosoma mansoni genome sequence supercontig S... 46 4.1 1
(AE014188) Plasmodium falciparum 3D7 chromosome 12, complete... 46 4.1 1
(AC108465) Homo sapiens BAC clone RP11-219C20 from 4, comple... 46 4.1 1
(AC107304) Homo sapiens 3 BAC RP11-598F17 (Roswell Park Canc... 46 4.1 1
(AC105393) Homo sapiens BAC clone RP11-379N10 from 2, comple... 46 4.1 1
(AC113217) Rattus norvegicus clone CH230-323F14, WORKING DRA... 46 4.1 1
(AC105646) Rattus norvegicus clone CH230-210K1, *** SEQUENCI... 46 4.1 1
(FP236633) Zebrafish DNA sequence *** SEQUENCING IN PROGRESS... 46 4.1 1
(AC060756) Homo sapiens chromosome 9 clone RP11-598F17 map 9... 46 4.1 1
(AC230133) Bos taurus clone CH240-521B5, WORKING DRAFT SEQUE... 46 4.1 1
(AC229807) Tupaia belangeri clone CH275-476N5, WORKING DRAFT... 46 4.1 1
(AC214368) Zea mays chromosome 1 clone CH201-149E11; ZMMBBc0... 46 4.1 1
(AC210409) Macaca mulatta chromosome 19 clone CH250-174F16, ... 46 4.1 1
(AC196042) Macaca mulatta chromosome UNK clone CH250-358J13,... 46 4.1 1
(AC005506) Plasmodium falciparum chromosome 12 clone PFYAC35... 46 4.1 1
(CC370819) PUHEL65TB ZM_0.6_1.0_KB Zea mays genomic clone ZM... 46 4.1 1
(BX206734) Danio rerio genomic clone DKEY-236D16, genomic su... 46 4.1 1
(CP000879) Petrotoga mobilis SJ95, complete genome. 46 4.1 1
(CZ822910) OC__Ba0201P14.f OC__Ba Oryza coarctata genomic cl... 36 4.5 2
(CZ749878) OC__Ba0099H09.f OC__Ba Oryza coarctata genomic cl... 36 4.7 2
(CT574556) Zebrafish DNA sequence *** SEQUENCING CANCELLED *... 36 6.0 6
(AC187486) Pongo abelii BAC clone CH276-38H12 from chromosom... 42 7.2 3
(CU929889) Pig DNA sequence *** SEQUENCING IN PROGRESS *** f... 34 7.5 2
(FN357851) Schistosoma mansoni genome sequence supercontig S... 34 7.7 2
(CN807759) HDAH10E03.F Leech Haementeria depressa library HD... 36 9.0 2
>(BJ446726) Dictyostelium discoideum cDNA clone:ddv63l13, 3' end,
single read.
Length = 756
Score = 819 bits (413), Expect(2) = 0.0
Identities = 413/413 (100%)
Strand = Plus / Minus
Query: 986 attccattccaagcaaatccacaaatatagtaatgctgttattgaacaaaaattggatca 1045
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 498 attccattccaagcaaatccacaaatatagtaatgctgttattgaacaaaaattggatca 439
Query: 1046 aattagagataccattaataatttacatagagataaccgagtctctagagattatactca 1105
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 438 aattagagataccattaataatttacatagagataaccgagtctctagagattatactca 379
Query: 1106 ttatcttagagaggttgaagacttaagatcatcacttcaaaaagaaaccgttgtctcaaa 1165
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 378 ttatcttagagaggttgaagacttaagatcatcacttcaaaaagaaaccgttgtctcaaa 319
Query: 1166 tgaattcatcaaaaatattgaattggaagataaattacgtagagaggaagaaaagaatca 1225
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 318 tgaattcatcaaaaatattgaattggaagataaattacgtagagaggaagaaaagaatca 259
Query: 1226 aagattaattgaagagattcatttacttgaaacctatttcatcttaaaagaaaaatcaaa 1285
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 258 aagattaattgaagagattcatttacttgaaacctatttcatcttaaaagaaaaatcaaa 199
Query: 1286 agcaaaacgtttatcaaccactaaagatcttttaactagatcaagatcaccaactttacc 1345
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 198 agcaaaacgtttatcaaccactaaagatcttttaactagatcaagatcaccaactttacc 139
Query: 1346 aagttctattaatatgtcaacctcatctttaggtagttcttcaagttctgctt 1398
|||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 138 aagttctattaatatgtcaacctcatctttaggtagttcttcaagttctgctt 86
Score = 414 bits (209), Expect(2) = 0.0
Identities = 209/209 (100%)
Strand = Plus / Minus
Query: 728 aatagatataaaccagttgatcttacacaatcatcttcaaactttcgttattcacgtgaa 787
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 756 aatagatataaaccagttgatcttacacaatcatcttcaaactttcgttattcacgtgaa 697
Query: 788 atttatgatgatgattattattcaaataataatttaatgatgtttggtaatgagcaacca 847
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 696 atttatgatgatgattattattcaaataataatttaatgatgtttggtaatgagcaacca 637
Query: 848 aatcaaacaccaatttctgtatcatcttcatctgcattcacacgtcaaagatctcaaagt 907
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 636 aatcaaacaccaatttctgtatcatcttcatctgcattcacacgtcaaagatctcaaagt 577
Query: 908 tgctttgaaccagagaatcttgtattgct 936
|||||||||||||||||||||||||||||
Sbjct: 576 tgctttgaaccagagaatcttgtattgct 548
Lambda K H
1.37 0.711 1.31
Matrix: blastn matrix:1 -3
Number of Sequences: 108600042
Number of Hits to DB: 1,198,799,777
Number of extensions: 78137276
Number of successful extensions: 6497761
Number of sequences better than 10.0: 73
Length of query: 1488
Length of database: 106,710,029,556
Length adjustment: 24
Effective length of query: 1464
Effective length of database: 104,103,628,548
Effective search space: 152407712194272
Effective search space used: 152407712194272
X1: 11 (21.8 bits)
S2: 22 (44.1 bits)
Dictyostelium discoideum cDNA Project Home