<Clone: Contig-U11340-1> <SEQ> <Translated> <CONTIG> <DNA> <Protein> <PSORT> <MOTIF>

Dictyostelium discoideum cDNA Contig-U11340-1

Dictyostelium discoideum cDNA Project Home

Assembled

Chromosomal Location of Contig-U11340-1

< more Chromosomal info >

Chromosome Number 2
Length 8467578
Start Poin 1,255,359
End Point 1,253,937
Strand MINUS

Sequence Contig-U11340-1

AAATNACCTA TATTCAACAA TATTTTAATT ATATAGGAGA TATTAACACA
GCTCATTACA CAATAAATAC ATATTATATA CATTTTATAT ATAGAAATCA
TAAATGAGTT CAAAAAATTA TAGTGATGAT GAAATTGAAA ATGAAGAAAA
TATTCATCCA AAAAAGAAAT TCAAGAATTT AAATAAAAAT AAAGATGATG
AATCATCAGA ACTAGAGGAA TATCATGATA GTAGTGAGGA GGATGAAAAT
GAACCAAATC AGTATCAATA TGATGATTTC GTGGTTGGTG GTGATGACGA
TGAACGTCGA AAAAGAAAGA AAAAAGAAAA AAGAAAGAAA TCATCATCAA
ATAGCGATAA TGAAGATGAT AATGAAGAAG AAGAGGAGGA GGATCGTGGT
GGTGGTGGTG GTAGTGGTAG TGGAGGTAGT GGTGGTAGTG GTGGCCGTAA
TAGTAGTANC CCAAAACGAA CCAATAATCA TCTTGATGAA GATATTGATG
GTGATGAAGA TGGTGATGAT GGATCANATG GAAGTGAATC TGAATCTGAA
TCTGAAGAGG ACGAANAAGT TGCACAAGCT ANAAGANAAA GAANAANAAA
AAGACGTGAA GAGAGAANAA AACGTGAAAA AGGTGGTTTA CAACGTTTAA
AGAAA----- -----CTCGT TATATGATGG CACAAGAGAT TGGATATGAT
CCACATGTAC GTTACTCGGT TAGAATGATC TATAGAAAGT ATGCACATAT
TACAACCACA CCCACTTTGA AAGGGTTCAA AGAGATTGAT GTTTTCCATC
CTTATTTCAC AGTGAAAAGT ATTCAAGAGA AACCAGCTCA TCTCTTTGAA
GACTCTCAAT ATCTTTTGAT TCTCAAAGCA GAGAAGGAAG GTTTCATCAA
ATCCACTATG GCAATCACCG AGAAAACTCA TAATTCCGTC ATCATTCCAG
AGATGGAATC ATTGTATCTA AGTGATGGTA CATCAGCAAT CACTCAACAA
TGGAATGAAC AAAGAAAACT TATCATTCGT GAAGCATTAA ATAAATTCCT
TTATCCAGTT TTAGAGAAAG AATTAAGAAA TAAATTATTA ACCGAAGCAA
GTAATCGTGT GGCTTTTGAA TGTGCAAAGA AATTGGAAGA CAAAATTCGT
GTTGCACCTT GGAGACCAGT TTCTTCGTCT AGTGGTATTG GTCATTCAAA
TTCAAGTGTA CTATTTGGTG GTTCAAGAGC AAATAACGGT TATAGTAATG
ATGATGACGA AGATGAAGAT GATGATGAAG AAGTTGATTA CGATAGAGAT
GGTAATCCAA TACCATTTAA AATTTTATCA CTTTGTTGGG GTTCAGATAA
AATTCCAACT ATGGGTGCAG TTTTAAATTC AGATGGTGAA GTATTGTCAC
ATATTAAATG GATTTCATTT GNATCGTTTA

Translated Amino Acid Sequence Contig-U11340-1

<All Frames> 
nxlystif*lyrry*hsslhnkyilytfyi*ks*MSSKNYSDDEIENEENIHPKKKFKNL
NKNKDDESSELEEYHDSSEEDENEPNQYQYDDFVVGGDDDERRKRKKKEKRKKSSSNSDN
EDDNEEEEEEDRGGGGGSGSGGSGGSGGRNSSXPKRTNNHLDEDIDGDEDGDDGSXGSES
ESESEEDEXVAQAXRXRXXKRREERXKREKGGLQRLKK---

---RYMMAQEIGYDPHVRYSVRMIYRKYAHITTTPTLKGFKEIDVFHPYFTVKSIQEKPA
HLFEDSQYLLILKAEKEGFIKSTMAITEKTHNSVIIPEMESLYLSDGTSAITQQWNEQRK
LIIREALNKFLYPVLEKELRNKLLTEASNRVAFECAKKLEDKIRVAPWRPVSSSSGIGHS
NSSVLFGGSRANNGYSNDDDEDEDDDEEVDYDRDGNPIPFKILSLCWGSDKIPTMGAVLN
SDGEVLSHIKWISFXSF


Homology Contig-U11340-1 vs CSM-Contig

<more CONTIG info> 
Sequences producing significant alignments:                        (bits)  Value


Contig-U11340-1 (Contig-U11340-1Q) /CSM_Contig/Conti...  1447  0.0
Contig-U00291-1 (Contig-U00291-1Q) /CSM_Contig/Conti...    52  2e-06
Contig-U12845-1 (Contig-U12845-1Q) /CSM_Contig/Conti...    50  7e-06
Contig-U12717-1 (Contig-U12717-1Q) /CSM_Contig/Conti...    44  4e-04
Contig-U12168-1 (Contig-U12168-1Q) /CSM_Contig/Conti...    44  4e-04
Contig-U12127-1 (Contig-U12127-1Q) /CSM_Contig/Conti...    44  4e-04
Contig-U11931-1 (Contig-U11931-1Q) /CSM_Contig/Conti...    44  4e-04
Contig-U11921-1 (Contig-U11921-1Q) /CSM_Contig/Conti...    44  4e-04
Contig-U09484-1 (Contig-U09484-1Q) /CSM_Contig/Conti...    44  4e-04
Contig-U09333-1 (Contig-U09333-1Q) /CSM_Contig/Conti...    44  4e-04


Homology Contig-U11340-1 vs DNA

<more DNA info> 
Sequences producing significant alignments:                  (bits) Value  N


(BJ351179) Dictyostelium discoideum cDNA clone:dda42f12, 3' ...  1140   0.0    1
(BJ378310) Dictyostelium discoideum cDNA clone:ddc31c16, 3' ...   250   5e-95  2
(BJ333333) Dictyostelium discoideum cDNA clone:dda42f12, 5' ...   224   3e-87  3
(BJ364380) Dictyostelium discoideum cDNA clone:ddc31c16, 5' ...   224   6e-86  3
(AM638703) Entamoeba dispar GSS, clone dispar56b12.q1k.            62   7e-05  1
(AM631085) Entamoeba dispar GSS, clone dispar63g11.p1k.            62   7e-05  1
(DN818065) G.hir-seedling 1265 3 and 5 week old seedlings Go...    62   7e-05  1
(BH824529) BACPP20-L19.z Pristionchus pacificus BAC ends Pri...    60   3e-04  1
(FE118377) LV_HC_RA068K15r Litopenaeus vannamei hemocyte cDN...    46   0.004  2
(FE079008) LV_GL_RA15L17r Litopenaeus vannamei gills cDNA li...    46   0.004  2


Homology Contig-U11340-1 vs Protein

<more Protein info> 
Sequences producing significant alignments:                      (bits) Value


AC116920_9(AC116920|pid:none) Dictyostelium discoideum chromosom...   430   e-119
AC149050_22(AC149050|pid:none) Medicago truncatula chromosome 7 ...   125   4e-27
AC004512_22(AC004512|pid:none) Arabidopsis thaliana chromosome 1...   120   9e-26
(Q9BTH9) RecName: Full=Transcription elongation factor SPT6;    ...   119   4e-25
AK129069_1(AK129069|pid:none) Mus musculus mRNA for mKIAA0162 pr...   117   1e-24
(Q62383) RecName: Full=Transcription elongation factor SPT6;  &A...   117   1e-24
(Q8UVK2) RecName: Full=Transcription elongation factor SPT6; Alt...   116   2e-24
BC063248_1(BC063248|pid:none) Danio rerio suppressor of Ty 6 hom...   116   2e-24
AC010795_22(AC010795|pid:none) Arabidopsis thaliana chromosome 1...   116   2e-24
FN359277_3(FN359277|pid:none) Schistosoma mansoni genome sequenc...   114   7e-24


<Clone: Contig-U11340-1> <SEQ> <Translated> <CONTIG> <DNA> <Protein> <PSORT> <MOTIF>

Dictyostelium discoideum cDNA Project Home