Dictyostelium discoideum cDNA Contig-U11313-1

Assembled

Chromosomal Location of Contig-U11313-1

Sequence Contig-U11313-1

ATTTTTTTTT TCTTTCACTT TTCGAAAACA AATATAAAAT GGTAGAAGAT
GAAGAAATAA ATGATCAAAT ATCTGAAGAA GAAGAAGAAA AAAAGAAAAA
CAATGATTCA GATGAAGAAA TGAAGGATAT AGATGAAGAG GAAGAGGAAG
AGGAAGAGGA AGAGGAGGAG GAAGAGGAGG AAGAAAAGGA GGAAGAAGAG
GAAGAGGAAG AGGAAGAAAC ACCAAAAAAG CCAATGCCTC CACCTCAATC
TAAAGCAAAA CCTTCCTCAC AACCACCAGA TATAAAAAAA GCATCACAAC
AATCACAAAC ACAAAAGAAT ACGCCCCCAC CAATACAAAC ATCACAATCA
TCTCAATCAT CACAATCATC ACAATCATCT CAACAACAAC AACCAAAGAA
TATATCACAA ACACAACAAC CAAAGAATAC ACCCCCATTA CAATCATCAC
AAACATCACA AACATCACAA AAGACACCAG TATCTAGTAA TAATGGAATT
GAGAAAAGAT TAATGATTAC TAAAATGGTT ATGGAGAATT TTAAATCATA
TGCAGGTGCC CAAGAGGTTG GACCATTTCA TAAGTGTTTT AGTTCAGTAG
TTGGTCCTAA TGGTAGTGGT AAATCAAATG TTATCGATGC AATGTTATTT
GTATTTGGTT A--------- -AAAGATTTC CAATGGTGCA ACTCAAAATT
TAGATGATGC AATCAAAGCA CTAGAGGATG CCAAAACCAT TTCATCCACT
CGTAAGAATA ATATCACCAA ATCAAAGAAG GAGTTGGAAT CGGTTAAAGC
AATTATAGTG GATCTTGAGA AAAGACTTGC AAGTGGTAAA GTCACCGAAG
AGAATCTCTA TAGAAATACA ATGGATGCCA AGAGACAATT GGAACAAATT
AAGACCAATC TCTCTGAAAA TAGTTCAAGA AACACTATAT TGGATCGTTT
ATTAAAGATT AAAGAAAGTG GTCAAATTAG TGGTATTCAT GGTAGATTGG
GTGATTTGGG TGCAATCGAT CAAAAGTATG ATGTTGCCAT CTCTACTGCT
GCCTTCTCAC AAATGGATAA TATCATTGTA GAGACAACAG CAGCCGCCGA
AGCATGTGTT GAACTATTAC GTAAGGAGAA TTTAGGTAGA GCTACATTTA
TGATCTTGGA GAATTTAGAA TATCAACGTC AAAATCTTGG TCCAGTTCAA
ACACCAAATA ATACACCACG TCTATTTGAT TTAATAAAGA TGAAAGATGA
AAAAAAGTAT GCAACCGCCT TTTTCACTGC AGTTGGTCAT ACTTTGGTTG
CTGATACTTT GGATGAAGCA ACCAAAATAG CCTATGGAGC AAAAAGACAT
CGTGTTGTAA CTTTGGATGG TTCACTCATT GACACTAGTG GTGCAATGAG
TGGTGGTGGT CTCAAACCAA GAGTTGGTGC AATGAACTCC AAAATTAAAG
GGTGATCCAA AAGAAGATAA AAAGAAATTG ATAGAGTTAC AAGACAATCT
TTCTCAATTG GATAGTGATC TTCGTCAATG TAGGGATGAG TTGGTAGAGA
TTGAAAACCA AATTCAACAA GCACAAAATC GTCGTTCTGA ATTAGAATTA
GAATTGCCAA AGATGGATAT GGATATTAAA GCAGCCATTA CAAAATGTGA
AGAGTTAACC AAAGTTATTC CTCAACTAAA GAATAAAGCA AAGTTATCCA
CTGAAAAGAA GGAACAAATC GATTCCATCA AAGAATCATT GATTGTTGAT
CAAAAATCTT TAGATAAGGT TCAAGAGAAA GTTAATAAAT TAGAATCTGA
AGTTCAAGAA ATTCAAAACA GTATCTTAAA TGTTGGTGGT CCACAATTGA
AAATGCAAAA GAATAAAGTT GAATCACTTC AATCTAGAAT TGATTCAAAC
CAAACCAACA CTACCAAAGC AAATGTTCAA ATCAAATCAT TAGCAAAATC
AATGGAAAAA TCAATTAAAA TATTGAATGA AAATACCAAA GAAAAGGATG
AGAATGAAGC AGCATTAGCA GAGATTCTAG AGAAATATAA ATCATTGGAG
AAAGAGAATC TTAAAGCCAC TGAAGCAAGG AAGCTGTCTC GAACAACTTC
GNAAAGGAAG NAAGAAACCA AAGAA

Translated Amino Acid Sequence Contig-U11313-1

FFFLSLFENKYKMVEDEEINDQISEEEEEKKKNNDSDEEMKDIDEEEEEEEEEEEEEEEE
EKEEEEEEEEEETPKKPMPPPQSKAKPSSQPPDIKKASQQSQTQKNTPPPIQTSQSSQSS
QSSQSSQQQQPKNISQTQQPKNTPPLQSSQTSQTSQKTPVSSNNGIEKRLMITKMVMENF
KSYAGAQEVGPFHKCFSSVVGPNGSGKSNVIDAMLFVFG---

---KISNGATQNLDDAIKALEDAKTISSTRKNNITKSKKELESVKAIIVDLEKRLASGKV
TEENLYRNTMDAKRQLEQIKTNLSENSSRNTILDRLLKIKESGQISGIHGRLGDLGAIDQ
KYDVAISTAAFSQMDNIIVETTAAAEACVELLRKENLGRATFMILENLEYQRQNLGPVQT
PNNTPRLFDLIKMKDEKKYATAFFTAVGHTLVADTLDEATKIAYGAKRHRVVTLDGSLID
TSGAMSGGGLKPRVGAMNSKIKG*skrr*keidrvtrqsfsig**sssm*g*vgrd*kpn
ststkssf*iririakdgygy*sshykm*rvnqsysstke*skvih*kegtnrfhqriid
c*skifr*gsres**iri*ssrnskqylkcwwstienake*s*itsi*n*fkpnqhyqsk
csnqiiskingkin*nie*kyqrkg*e*ssisrdsrei*iigeres*sh*skeavsnnfx
kexrnqr

Homology Contig-U11313-1 vs CSM-Contig

Sequences producing significant alignments:                        (bits)  Value


Contig-U11313-1 (Contig-U11313-1Q) /CSM_Contig/Conti...  2892  0.0
Contig-U12114-1 (Contig-U12114-1Q) /CSM_Contig/Conti...    42  0.002
Contig-U07842-1 (Contig-U07842-1Q) /CSM_Contig/Conti...    38  0.038
Contig-U14097-1 (Contig-U14097-1Q) /CSM_Contig/Conti...    36  0.15
Contig-U13520-1 (Contig-U13520-1Q) /CSM_Contig/Conti...    36  0.15
Contig-U13044-1 (Contig-U13044-1Q) /CSM_Contig/Conti...    36  0.15
Contig-U12647-1 (Contig-U12647-1Q) /CSM_Contig/Conti...    36  0.15
Contig-U12024-1 (Contig-U12024-1Q) /CSM_Contig/Conti...    36  0.15
Contig-U11515-1 (Contig-U11515-1Q) /CSM_Contig/Conti...    36  0.15
Contig-U11010-1 (Contig-U11010-1Q) /CSM_Contig/Conti...    36  0.15

Homology Contig-U11313-1 vs DNA

Sequences producing significant alignments:                  (bits) Value  N


(BJ354204) Dictyostelium discoideum cDNA clone:dda52k20, 3' ...  1146   0.0    3
(BJ350927) Dictyostelium discoideum cDNA clone:dda41p09, 3' ...  1140   0.0    1
(BJ409183) Dictyostelium discoideum cDNA clone:dds39c23, 3' ...   938   0.0    4
(BJ351108) Dictyostelium discoideum cDNA clone:dda42g02, 3' ...   938   0.0    2
(BJ350650) Dictyostelium discoideum cDNA clone:dda40h13, 3' ...   591   0.0    4
(BJ333269) Dictyostelium discoideum cDNA clone:dda42g02, 5' ...   375   e-148  4
(BJ395679) Dictyostelium discoideum cDNA clone:dds39c23, 5' ...   369   e-144  3
(BJ396048) Dictyostelium discoideum cDNA clone:dds41n05, 5' ...   268   e-117  4
(BJ336143) Dictyostelium discoideum cDNA clone:dda52k20, 5' ...   218   7e-99  3
(BJ333103) Dictyostelium discoideum cDNA clone:dda41p09, 5' ...   204   2e-95  4

Homology Contig-U11313-1 vs Protein

Sequences producing significant alignments:                      (bits) Value


(Q54LV0) RecName: Full=Structural maintenance of chromosomes pro...   468   0.0
(Q9FJL0) RecName: Full=Structural maintenance of chromosomes pro...   183   1e-63
AJ488495_1(AJ488495|pid:none) Oryza sativa mRNA for SMC4 protein.     182   2e-58
AM270136_8(AM270136|pid:none) Aspergillus niger contig An07c0190...   188   8e-58
CU633865_131(CU633865|pid:none) Podospora anserina genomic DNA c...   175   1e-57
D30788_1(D30788|pid:none) Schizosaccharomyces pombe gene for cut...   190   1e-57
(P41004) RecName: Full=Structural maintenance of chromosomes pro...   190   1e-57
AP007171_424(AP007171|pid:none) Aspergillus oryzae RIB40 genomic...   189   4e-56
CU928175_63(CU928175|pid:none) Zygosaccharomyces rouxii strain C...   179   2e-53
AE016820_457(AE016820|pid:none) Ashbya gossypii (= Eremothecium ...   175   2e-52