Dictyostelium discoideum cDNA Contig-U11265-1

Assembled

Chromosomal Location of Contig-U11265-1

Sequence Contig-U11265-1

ATTATTATCA TTATTTTTAT TTTTTTTATA TTTTTTTATG CATAATAAAT
TATATCACAT CATTAGAAAA ATTAATAAAT TAAACAAATA AACAATAAAT
ACATTACATA TATAATAATT ATTCATTTTC TTATCAAATA AATTAGATTG
TAAAAAAAAA AAAAAAAAAA AAAAAAAAAA AAAAAAAAAA AAAAAAAAAA
AAAAAAANNN NTTTTTTTTT TNAAAAAAAA A--------- -ATTAGAGAA
TCATAGTGTT AGAAATATTG TTATGGGTAA TTTTCATTTA GTTTGTTTAA
CTGATAGTGG AGAAGTTGTA ACCATTGGTA GAAATAAAAC TGGACAATTG
GGTAGAACTG ATGCTGAGAA TGAACCTGGT ATTGTTAAAC AACTCTCATT
CGATCCTGAT GGTTTGAATA GTGATGAATT TGTTGTATCA ATAGCAGCTG
GTGAATTTCA TTCAGTGGCA TTGGTTGAAA ATACTCCAAA GACAAAATTA
GCATTACAAT TGGTTAGAAT GCAAAGAAAT TATCTACGTC AATTAAATAT
CTTAAATAAT ATCTACTATA AATCAATGAT GTCAATGGCA TCACCTTATG
ATCCAGTCGT TCTATCAATG ATGAATAATG GTAGTGCTTC AACTTTACCA
CCATCTCTTA AAGGTTTAAG TGGTGGTTTA CCTGATAATG CAAATAATAC
TATTAAAAAT GGTAAAGATA AAGATAACCA CCATAATGGT GATAGTAATG
GTCATCACAG TAATGGTCAT TATCATGGTA ATGGTAATAA TGGTAATAAT
TCAATAACAA CTAGTAATTC AATATCATCA CCATCATTAC TAGGTAGTGG
TGGCACATTA AAATCACGTT CAGCAAGTAT TGCAACTATT AGAGGTTTAT
TTGGTATTAA TCATATGTTA CATCATTCAC AATCACAATC ATTTCAAGAG
GAGGATTCAA CCGTTACAGA AGATGAAATT AAAGAGATCT TTTCAGATAT
TGAAGCATTA TCAA

Translated Amino Acid Sequence Contig-U11265-1

llslflfflyffmhnklyhiirkinklnk*tintlhi**LFIFLSNKLDCKKKKKKKKKK
KKKKKKKKXXFFFXKK---

---LENHSVRNIVMGNFHLVCLTDSGEVVTIGRNKTGQLGRTDAENEPGIVKQLSFDPDG
LNSDEFVVSIAAGEFHSVALVENTPKTKLALQLVRMQRNYLRQLNILNNIYYKSMMSMAS
PYDPVVLSMMNNGSASTLPPSLKGLSGGLPDNANNTIKNGKDKDNHHNGDSNGHHSNGHY
HGNGNNGNNSITTSNSISSPSLLGSGGTLKSRSASIATIRGLFGINHMLHHSQSQSFQEE
DSTVTEDEIKEIFSDIEALS

Homology Contig-U11265-1 vs CSM-Contig

Sequences producing significant alignments:                        (bits)  Value


Contig-U11265-1 (Contig-U11265-1Q) /CSM_Contig/Conti...  1532  0.0
Contig-U12494-1 (Contig-U12494-1Q) /CSM_Contig/Conti...    46  7e-05
Contig-U11874-1 (Contig-U11874-1Q) /CSM_Contig/Conti...    40  0.005
Contig-U12197-1 (Contig-U12197-1Q) /CSM_Contig/Conti...    38  0.018
Contig-U11744-1 (Contig-U11744-1Q) /CSM_Contig/Conti...    38  0.018
Contig-U09065-1 (Contig-U09065-1Q) /CSM_Contig/Conti...    38  0.018
Contig-U14822-1 (Contig-U14822-1Q) /CSM_Contig/Conti...    36  0.072
Contig-U13711-1 (Contig-U13711-1Q) /CSM_Contig/Conti...    36  0.072
Contig-U12435-1 (Contig-U12435-1Q) /CSM_Contig/Conti...    36  0.072

Homology Contig-U11265-1 vs DNA

Sequences producing significant alignments:                  (bits) Value  N


(AY160092) Dictyostelium discoideum nucleotide exchange fact...  1524   0.0    1
(BJ389349) Dictyostelium discoideum cDNA clone:dds18m12, 5' ...  1197   0.0    1
(BJ349610) Dictyostelium discoideum cDNA clone:dda37f05, 3' ...  1181   0.0    1
(GR575508) CBXU962.b1 CBXU Dictyostelium purpureum 6 hr vege...   145   9e-53  4
(GR568776) CBTF4108.b1 CBTF Dictyostelium purpureum 12 hr ve...   119   3e-45  4
(FN357299) Schistosoma mansoni genome sequence supercontig S...    40   1e-04  2
(BJ392311) Dictyostelium discoideum cDNA clone:dds27n03, 5' ...    56   3e-04  2
(BJ395469) Dictyostelium discoideum cDNA clone:dds39b01, 5' ...    56   0.003  1
(BJ369197) Dictyostelium discoideum cDNA clone:ddc49m18, 5' ...    56   0.003  1
(BJ335942) Dictyostelium discoideum cDNA clone:dda52k02, 5' ...    56   0.003  1

Homology Contig-U11265-1 vs Protein

Sequences producing significant alignments:                      (bits) Value


AY160092_1(AY160092|pid:none) Dictyostelium discoideum nucleotid...   365   1e-99
BT059307_1(BT059307|pid:none) Salmo salar clone ssal-rgf-540-130...    51   6e-05
BC038960_1(BC038960|pid:none) Homo sapiens hect domain and RLD 3...    50   2e-04
(Q15034) RecName: Full=Probable E3 ubiquitin-protein ligase HERC...    50   2e-04
B38919(B38919) hypothetical protein 2 - human (fragment)  &D2521...    50   2e-04
BC059796_1(BC059796|pid:none) Danio rerio regulator of chromosom...    50   2e-04
BT053046_1(BT053046|pid:none) Medicago truncatula clone MTYFL_FM...    50   2e-04
AJ851682_1(AJ851682|pid:none) Gallus gallus mRNA for hypothetica...    49   2e-04
AE017342_374(AE017342|pid:none) Cryptococcus neoformans var. neo...    49   3e-04
BC145978_1(BC145978|pid:none) Mus musculus hect domain and RLD 3...    49   4e-04