Homology Contig-U11265-1 vs DNA
Query= Contig-U11265-1 (Contig-U11265-1Q) /CSM_Contig/Contig-U11265-1Q.Seq.d
(1014 letters)
Database: ddbj_A
108,600,042 sequences; 106,710,029,556 total letters
Searching..................................................done
Score E
Sequences producing significant alignments: (bits) Value N
(AY160092) Dictyostelium discoideum nucleotide exchange fact... 1524 0.0 1
(BJ389349) Dictyostelium discoideum cDNA clone:dds18m12, 5' ... 1197 0.0 1
(BJ349610) Dictyostelium discoideum cDNA clone:dda37f05, 3' ... 1181 0.0 1
(GR575508) CBXU962.b1 CBXU Dictyostelium purpureum 6 hr vege... 145 9e-53 4
(GR568776) CBTF4108.b1 CBTF Dictyostelium purpureum 12 hr ve... 119 3e-45 4
(FN357299) Schistosoma mansoni genome sequence supercontig S... 40 1e-04 2
(BJ392311) Dictyostelium discoideum cDNA clone:dds27n03, 5' ... 56 3e-04 2
(BJ395469) Dictyostelium discoideum cDNA clone:dds39b01, 5' ... 56 0.003 1
(BJ369197) Dictyostelium discoideum cDNA clone:ddc49m18, 5' ... 56 0.003 1
(BJ335942) Dictyostelium discoideum cDNA clone:dda52k02, 5' ... 56 0.003 1
(BJ334254) Dictyostelium discoideum cDNA clone:dda45m18, 5' ... 56 0.003 1
(BJ332062) Dictyostelium discoideum cDNA clone:dda37f05, 5' ... 56 0.003 1
(BJ330858) Dictyostelium discoideum cDNA clone:dda33b04, 5' ... 56 0.003 1
(FE039117) JGI_CAGI2858.rev CAGI Montastraea faveolata 13 da... 52 0.009 2
(AR552243) Sequence 7374 from patent US 6747137. 48 0.065 2
(FE116186) LV_HC_RA063P18f Litopenaeus vannamei hemocyte cDN... 38 0.16 2
(CE543880) tigr-gss-dog-17000366076905 Dog Library Canis lup... 50 0.18 1
(ER592927) 1093016208007 Global-Ocean-Sampling_GS-36-01-01-2... 36 0.44 2
(EK270777) 1095462256093 Global-Ocean-Sampling_GS-31-01-01-1... 36 0.67 2
(EJ374202) 1092963735014 Global-Ocean-Sampling_GS-28-01-01-1... 42 0.68 2
(AC009297) Homo sapiens BAC clone RP11-3E14 from 2, complete... 48 0.70 1
(AC178785) Strongylocentrotus purpuratus clone R3-29P4, WORK... 48 0.70 1
(AC176942) Strongylocentrotus purpuratus clone R3-33O17, WOR... 48 0.70 1
(L12272) Bacillus subtilis UDP-glucose pyrophosphorylase (gt... 44 0.96 2
(FN357526) Schistosoma mansoni genome sequence supercontig S... 34 1.3 2
(AC179763) Strongylocentrotus purpuratus clone R3-1016L20, W... 32 1.4 2
(CX834233) ACAC-aaa55a05.g1 Hydra EST UCI 7 Hydra magnipapil... 36 1.5 2
(AM488904) Vitis vinifera, whole genome shotgun sequence, co... 34 1.6 2
(AM457160) Vitis vinifera contig VV78X106544.6, whole genome... 34 1.7 2
(DY953181) CHPY9491.b1_E22.ab1 CHP(XYZ) plains sunflower Hel... 32 1.9 2
(AC107182) Rattus norvegicus clone CH230-120M18, *** SEQUENC... 46 2.3 2
(CU843458) A BAC library has been constructed from PN40024 g... 34 2.7 3
(AC180338) Strongylocentrotus purpuratus clone R3-3118L9, WO... 44 2.7 3
(AL670285) Mouse DNA sequence from clone RP23-308N2 on chrom... 46 2.8 1
(AC122500) Mus musculus BAC clone RP24-409J4 from chromosome... 46 2.8 1
(AC202733) Macaca mulatta BAC CH250-414E3 (Children's Hospi... 46 2.8 1
(FM992691) Candida dubliniensis CD36 chromosome 4, complete ... 46 2.8 1
(FN357546) Schistosoma mansoni genome sequence supercontig S... 46 2.8 1
(FN357326) Schistosoma mansoni genome sequence supercontig S... 46 2.8 1
(AM910994) Plasmodium knowlesi strain H chromosome 12, compl... 46 2.8 1
(AC133482) Rattus norvegicus clone CH230-176D10, *** SEQUENC... 46 2.8 1
(AC131622) Rattus norvegicus clone CH230-117E17, WORKING DRA... 46 2.8 1
(AC121655) Rattus norvegicus clone CH230-301K18, *** SEQUENC... 46 2.8 1
(AC114385) Rattus norvegicus clone CH230-342D6, WORKING DRAF... 46 2.8 1
(AC105652) Rattus norvegicus clone CH230-116K15, *** SEQUENC... 46 2.8 1
(AC095426) Rattus norvegicus clone CH230-7A11, WORKING DRAFT... 46 2.8 1
(AC079572) Mus musculus clone RP23-75A20, WORKING DRAFT SEQU... 46 2.8 1
(AC079559) Mus musculus clone RP23-451E4, WORKING DRAFT SEQU... 46 2.8 1
(AC179008) Strongylocentrotus purpuratus clone R3-1108K24, W... 46 2.8 1
(AC177153) Strongylocentrotus purpuratus clone R3-4015B14, W... 46 2.8 1
(BH350637) CH230-120M18.TJ CHORI-230 Segment 1 Rattus norveg... 46 2.8 1
(AZ431010) 1M0215D14R Mouse 10kb plasmid UUGC1M library Mus ... 46 2.8 1
(EJ711969) 1092956082034 Global-Ocean-Sampling_GS-30-02-01-1... 46 2.8 1
(EJ705664) 1092956052394 Global-Ocean-Sampling_GS-30-02-01-1... 46 2.8 1
(CL104461) ISB1-43A12_T7.1 ISB1 Xenopus (Silurana) tropicali... 46 2.8 1
(CG643426) OST382346 Mus musculus 129Sv/Ev Mus musculus cDNA... 46 2.8 1
(CG544168) OST141073 Mus musculus 129Sv/Ev Mus musculus cDNA... 46 2.8 1
(CG488557) OST24526 Mus musculus 129Sv/Ev Mus musculus cDNA ... 46 2.8 1
(EL457532) CHTS10999.b1_M14.ab1 CHT(LMS) Jerusalem artichoke... 46 2.8 1
(BJ442135) Dictyostelium discoideum cDNA clone:ddv48o19, 3' ... 46 2.8 1
(AA798468) vx75a01.r1 Stratagene mouse skin (#937313) Mus mu... 46 2.8 1
(AL139083) Human DNA sequence from clone RP11-270C18 on chro... 36 3.3 5
(AL844509) Plasmodium falciparum 3D7 chromosome 13. 34 4.3 2
(AF063866) Melanoplus sanguinipes entomopoxvirus, complete g... 38 4.7 9
(CU655871) Zebrafish DNA sequence from clone CH1073-290J19. 38 5.1 2
(AC201535) Strongylocentrotus purpuratus clone R3-3096B6, WO... 34 5.1 2
(AC102518) Mus musculus chromosome 8, clone RP24-502J8, comp... 32 5.2 2
(CU151862) Pig DNA sequence *** SEQUENCING IN PROGRESS *** f... 32 5.2 2
(AC179993) Strongylocentrotus purpuratus clone R3-16P5, WORK... 34 5.3 6
(AL096782) Plasmodium falciparum DNA *** SEQUENCING IN PROGR... 34 5.4 2
(AL161502) Arabidopsis thaliana DNA chromosome 4, contig fra... 34 6.1 5
(CU633477) Zebrafish DNA sequence from clone CH73-87C18 in l... 44 7.3 2
(EC190561) SSE00005336 Metatranscriptome of hindgut from Zoo... 34 7.4 2
(AC159253) Mus musculus BAC clone RP24-110K11 from chromosom... 42 8.5 3
(CU694568) Pig DNA sequence *** SEQUENCING IN PROGRESS *** f... 44 9.5 4
>(AY160092) Dictyostelium discoideum nucleotide exchange factor RasGEF
C (gefC) gene, complete cds.
Length = 4951
Score = 1524 bits (769), Expect = 0.0
Identities = 772/773 (99%)
Strand = Plus / Plus
Query: 242 attagagaatcatagtgttagaaatattgttatgggtaattttcatttagtttgtttaac 301
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 1953 attagagaatcatagtgttagaaatattgttatgggtaattttcatttagtttgtttaac 2012
Query: 302 tgatagtggagaagttgtaaccattggtagaaataaaactggacaattgggtagaactga 361
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 2013 tgatagtggagaagttgtaaccattggtagaaataaaactggacaattgggtagaactga 2072
Query: 362 tgctgagaatgaacctggtattgttaaacaactctcattcgatcctgatggtttgaatag 421
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 2073 tgctgagaatgaacctggtattgttaaacaactctcattcgatcctgatggtttgaatag 2132
Query: 422 tgatgaatttgttgtatcaatagcagctggtgaatttcattcagtggcattggttgaaaa 481
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 2133 tgatgaatttgttgtatcaatagcagctggtgaatttcattcagtggcattggttgaaaa 2192
Query: 482 tactccaaagacaaaattagcattacaattggttagaatgcaaagaaattatctacgtca 541
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 2193 tactccaaagacaaaattagcattacaattggttagaatgcaaagaaattatctacgtca 2252
Query: 542 attaaatatcttaaataatatctactataaatcaatgatgtcaatggcatcaccttatga 601
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 2253 attaaatatcttaaataatatctactataaatcaatgatgtcaatggcatcaccttatga 2312
Query: 602 tccagtcgttctatcaatgatgaataatggtagtgcttcaactttaccaccatctcttaa 661
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 2313 tccagtcgttctatcaatgatgaataatggtagtgcttcaactttaccaccatctcttaa 2372
Query: 662 aggtttaagtggtggtttacctgataatgcaaataatactattaaaaatggtaaagataa 721
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 2373 aggtttaagtggtggtttacctgataatgcaaataatactattaaaaatggtaaagataa 2432
Query: 722 agataaccaccataatggtgatagtaatggtcatcacagtaatggtcattatcatggtaa 781
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 2433 agataaccaccataatggtgatagtaatggtcatcacagtaatggtcattatcatggtaa 2492
Query: 782 tggtaataatggtaataattcaataacaactagtaattcaatatcatcaccatcattact 841
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 2493 tggtaataatggtaataattcaataacaactagtaattcaatatcatcaccatcattact 2552
Query: 842 aggtagtggtggcacattaaaatcacgttcagcaagtattgcaactattagaggtttatt 901
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 2553 aggtagtggtggcacattaaaatcacgttcagcaagtattgcaactattagaggtttatt 2612
Query: 902 tggtattaatcatatgttacatcattcacaatcacaatcatttcaagaggaggattcaac 961
|||||||||||||||||||||||||||||||||||||||||||||||||||| |||||||
Sbjct: 2613 tggtattaatcatatgttacatcattcacaatcacaatcatttcaagaggagaattcaac 2672
Query: 962 cgttacagaagatgaaattaaagagatcttttcagatattgaagcattatcaa 1014
|||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 2673 cgttacagaagatgaaattaaagagatcttttcagatattgaagcattatcaa 2725
Lambda K H
1.37 0.711 1.31
Matrix: blastn matrix:1 -3
Number of Sequences: 108600042
Number of Hits to DB: 1,049,240,328
Number of extensions: 61441895
Number of successful extensions: 5032083
Number of sequences better than 10.0: 75
Length of query: 1014
Length of database: 106,710,029,556
Length adjustment: 24
Effective length of query: 990
Effective length of database: 104,103,628,548
Effective search space: 103062592262520
Effective search space used: 103062592262520
X1: 11 (21.8 bits)
S2: 22 (44.1 bits)
Dictyostelium discoideum cDNA Project Home