Dictyostelium discoideum cDNA Contig-U11225-1

Assembled

Chromosomal Location of Contig-U11225-1

Sequence Contig-U11225-1

GGGAATTTAT TATGTTTTAC CCCTATTTCT TTCATATATA AAAATATAAT
ATAAACAAAT AAAATTTAAT AAAATGACTA AAAATGATTT ACAAACTTAT
ATTCAACAAA AAAGAATAGG ATATTTACCA GTATACCATT CAGAGTGTAG
AGGACCTGAC CACGAGAGAG AATATCGTAC ACACATACGC GTTGGTGAAA
TTAATTCAAA ACATAACAAT AAAATTGTAT ATTCCGATTG GTATAAAAAT
AAAAAAACAG CAGAATCATG TTGCGCAATA AAAGTTTTAA ATTATTTAAA
TCAACAGGGA AGAGAAGATT TAAATAATAA ATATCAAGAA CAAAAAAAAA
CTAGACAACA ACAAGAACAA GAAATAGAAT CACCACCACC ACAACAACCA
CAACAATTAA CATATCAAAC AAAACAATCA ATAGATTCAT TATTTTCAAA
ATTTATTAGT ATAGATAAAA ATAAAATTAA AGATGAATTA ATTGAAAAAC
AAAAAAATGA TGGAAATTTA TTAAGTGGTG GTTTTAGTTA TTTACATTTT
AATGAACCAA CTCAAATGGA AAAGGATAAT GAAATTGAAA GATTAAAGAG
AACACTTGGT GATTTACAAC AAAGAGTTGA TACTATGAAT AGCATTTTTC
AAGA------ ---------- ----TGGAAT GTCAATATCA TCTCAAAAGA
AGGCTATAGA AGAGTTTAGA AGTGATCAAT GTAATGTTAT AGTTGCAACT
AGTGTAGTGG AAGAAGGATT CGATGTACCA GAATGTAATA TTGTAATTAG
ATTAGATCCA CCAACAACCG TTACTGCTAA TATTCAATCA AGGGGTAGAT
TAAGAAATAG GGATAGTTAT TTCTATGGTA TTGTCAAAGT TGATGATCCA
AGAGAGGATA ACATCTATGA GTTCTTTAAA AATCAAGAAA GATATTTAGA
AGAGGCTATT AATTTCTTAA AAACTGGTGA ACTTCCAATA TCTTTAAAAC
AACAAAACTA TACAACTCAA GTTAATCAAG TTGATGAAGA AATGGATACA
AATTCCTATT TTGCTTCTGC TAGTGCTTTG GTTCAAGAGA TGGTTATTCA
AGTTAAAAGA CATACATTTG ATTTTGGTAT AGCTTGGGAA CATACTCCTG
ATGGTTCTGG TTTTTTTAAT GCTATTGCTA CTTTCTATAT AAATAAAGAA
GCTGCACATT CTCATTCTAA ATCTGGTCAA AATAAAAAAA CTGCAAAAGA
AAATACTTGC AAATCAATTT TACAATCTGG TTTAATTTAT AATTTAATTA
AAAATTTAGA GTAAAATTTT TAAATAGTAT AATAATAATA AATAATAATA
ATAATAATAA TAATAAATTA TAATAATAAT AATAATAATA ACAANATAAA
AATATAATAA AATGTATGTN AAATAAA

Translated Amino Acid Sequence Contig-U11225-1

giyyvlplflsyiki*YKQIKFNKMTKNDLQTYIQQKRIGYLPVYHSECRGPDHEREYRT
HIRVGEINSKHNNKIVYSDWYKNKKTAESCCAIKVLNYLNQQGREDLNNKYQEQKKTRQQ
QEQEIESPPPQQPQQLTYQTKQSIDSLFSKFISIDKNKIKDELIEKQKNDGNLLSGGFSY
LHFNEPTQMEKDNEIERLKRTLGDLQQRVDTMNSIFQ---

---XXXGMSISSQKKAIEEFRSDQCNVIVATSVVEEGFDVPECNIVIRLDPPTTVTANIQ
SRGRLRNRDSYFYGIVKVDDPREDNIYEFFKNQERYLEEAINFLKTGELPISLKQQNYTT
QVNQVDEEMDTNSYFASASALVQEMVIQVKRHTFDFGIAWEHTPDGSGFFNAIATFYINK
EAAHSHSKSGQNKKTAKENTCKSILQSGLIYNLIKNLE*nf*iv****iiiiiiiinynn
nnnnnxiki**nvcxi

Homology Contig-U11225-1 vs CSM-Contig

Sequences producing significant alignments:                        (bits)  Value


Contig-U11225-1 (Contig-U11225-1Q) /CSM_Contig/Conti...  1088  0.0
Contig-U14319-1 (Contig-U14319-1Q) /CSM_Contig/Conti...    38  0.026
Contig-U12384-1 (Contig-U12384-1Q) /CSM_Contig/Conti...    38  0.026
Contig-U10521-1 (Contig-U10521-1Q) /CSM_Contig/Conti...    38  0.026
Contig-U08694-1 (Contig-U08694-1Q) /CSM_Contig/Conti...    38  0.026
Contig-U04436-1 (Contig-U04436-1Q) /CSM_Contig/Conti...    38  0.026
Contig-U01994-1 (Contig-U01994-1Q) /CSM_Contig/Conti...    38  0.026
Contig-U14880-1 (Contig-U14880-1Q) /CSM_Contig/Conti...    36  0.10
Contig-U13021-1 (Contig-U13021-1Q) /CSM_Contig/Conti...    36  0.10
Contig-U11863-1 (Contig-U11863-1Q) /CSM_Contig/Conti...    36  0.10

Homology Contig-U11225-1 vs DNA

Sequences producing significant alignments:                  (bits) Value  N


(BJ349197) Dictyostelium discoideum cDNA clone:dda35p15, 3' ...   963   0.0    2
(BJ421780) Dictyostelium discoideum cDNA clone:ddv43f24, 5' ...   270   0.0    4
(BJ331516) Dictyostelium discoideum cDNA clone:dda35p15, 5' ...   260   e-144  5
(GR580183) CBZY2615.g1 CBZY Dictyostelium purpureum 18 hr st...    98   1e-15  1
(AP009180) Candidatus Carsonella ruddii PV DNA, complete gen...    40   0.17   8
(DQ927305) Tetrahymena pigmentosa strain UM1060 mitochondrio...    38   0.27   5
(AL189206) Tetraodon nigroviridis genome survey sequence T7 ...    38   0.27   3
(CR853294) Zebrafish DNA sequence from clone DKEY-101O7 in l...    44   0.95   4
(EK566109) 1095521042509 Global-Ocean-Sampling_GS-32-01-01-1...    30   0.97   4
(DQ273272) Allium cepa clone S1D12, *** SEQUENCING IN PROGRE...    48   0.99   1

Homology Contig-U11225-1 vs Protein

Sequences producing significant alignments:                      (bits) Value


AC117075_21(AC117075|pid:none) Dictyostelium discoideum chromoso...   424   e-117
BC073528_1(BC073528|pid:none) Xenopus laevis MGC82787 protein, m...    73   2e-11
AM484908_1(AM484908|pid:none) Vitis vinifera contig VV78X038744....    72   5e-11
DQ398889_1(DQ398889|pid:none) Drosophila melanogaster isolate G1...    71   8e-11
DQ398899_1(DQ398899|pid:none) Drosophila simulans isolate Sim228...    71   8e-11
DQ398890_1(DQ398890|pid:none) Drosophila melanogaster isolate G1...    71   8e-11
DQ398886_1(DQ398886|pid:none) Drosophila melanogaster isolate G1...    71   8e-11
DQ398885_1(DQ398885|pid:none) Drosophila melanogaster isolate G1...    71   8e-11
DQ398893_1(DQ398893|pid:none) Drosophila simulans isolate Sim207...    71   8e-11
DQ398888_1(DQ398888|pid:none) Drosophila melanogaster isolate G1...    71   8e-11