Homology Contig-U11225-1 vs DNA
Query= Contig-U11225-1 (Contig-U11225-1Q) /CSM_Contig/Contig-U11225-1Q.Seq.d
(1427 letters)
Database: ddbj_A
108,600,042 sequences; 106,710,029,556 total letters
Searching..................................................done
Score E
Sequences producing significant alignments: (bits) Value N
(BJ349197) Dictyostelium discoideum cDNA clone:dda35p15, 3' ... 963 0.0 2
(BJ421780) Dictyostelium discoideum cDNA clone:ddv43f24, 5' ... 270 0.0 4
(BJ331516) Dictyostelium discoideum cDNA clone:dda35p15, 5' ... 260 e-144 5
(GR580183) CBZY2615.g1 CBZY Dictyostelium purpureum 18 hr st... 98 1e-15 1
(AP009180) Candidatus Carsonella ruddii PV DNA, complete gen... 40 0.17 8
(DQ927305) Tetrahymena pigmentosa strain UM1060 mitochondrio... 38 0.27 5
(AL189206) Tetraodon nigroviridis genome survey sequence T7 ... 38 0.27 3
(CR853294) Zebrafish DNA sequence from clone DKEY-101O7 in l... 44 0.95 4
(EK566109) 1095521042509 Global-Ocean-Sampling_GS-32-01-01-1... 30 0.97 4
(DQ273272) Allium cepa clone S1D12, *** SEQUENCING IN PROGRE... 48 0.99 1
(AC219447) Bos taurus clone CH240-340N9, WORKING DRAFT SEQUE... 48 0.99 1
(AP005539) Oryza sativa Japonica Group genomic DNA, chromoso... 38 1.7 6
(AC208201) Zea mays chromosome 1 clone CH201-173I11; ZMMBBc0... 32 2.0 2
(CU694449) Zebrafish DNA sequence *** SEQUENCING IN PROGRESS... 42 2.1 2
(DN311276) PL06009B2A06 cDNA from juvenile hermaphodites Sch... 34 2.6 2
(CZ784832) OC__Ba0147J11.f OC__Ba Oryza coarctata genomic cl... 42 2.9 2
(CU570924) Pig DNA sequence *** SEQUENCING IN PROGRESS *** f... 42 3.1 2
(AC105745) Oryza sativa Japonica Group chromosome 10 clone O... 36 3.4 3
(CT955963) Zebrafish DNA sequence from clone CH211-283L16 in... 46 3.9 1
(AC149024) Rhinolophus ferrumequinum clone VMRC7-385L24, WOR... 46 3.9 1
(AC180975) Strongylocentrotus purpuratus clone R3-3026M06, W... 46 3.9 1
(AC180959) Strongylocentrotus purpuratus clone R3-3026L05, W... 46 3.9 1
(AC173829) Bos taurus clone CH240-15K15, WORKING DRAFT SEQUE... 46 3.9 1
(AC172578) Bos taurus clone CH240-266P1, WORKING DRAFT SEQUE... 46 3.9 1
(DR430132) nax26d04.y1 Chicken eye (embryo). Unnormalized (n... 46 3.9 1
(CN573980) rc47b03.x1 Meloidogyne hapla egg pAMP1 v1 Meloido... 46 3.9 1
(BI974397) saj01b04.y1 Gm-c1065 Glycine max cDNA clone GENOM... 46 3.9 1
(FJ455507) Eriocheir sinensis mitochondrion, complete genome. 34 4.3 6
(AY274302) Eriocheir japonica sinensis mitochondrion, comple... 34 4.3 6
(AL248394) Tetraodon nigroviridis genome survey sequence PUC... 34 4.9 3
(BH132916) ENTNV04TR Entamoeba histolytica Sheared DNA Entam... 40 5.2 2
(AL235416) Tetraodon nigroviridis genome survey sequence T7 ... 38 5.5 2
(BX465225) Zebrafish DNA sequence from clone DKEY-29F10 in l... 38 6.8 5
(CU467983) Zebrafish DNA sequence from clone CH73-223A15 in ... 42 6.8 2
(AM427199) Vitis vinifera contig VV78X148195.16, whole genom... 32 8.1 2
(M10126) Leishmania tarentolae kinetoplast pre-edited mitoch... 32 8.2 2
(FJ416603) Leishmania donovani isolate MHOM/SD/62/1S-Cl2D ma... 32 8.3 2
(AX346633) Sequence 1704 from Patent WO0200928. 34 8.8 2
(CR450846) Zebrafish DNA sequence from clone DKEY-99O2 in li... 42 8.8 2
(BJ389814) Dictyostelium discoideum cDNA clone:dds20m03, 5' ... 34 8.8 2
(GC698970) Sequence 14215 from patent US 6812339. 36 9.2 4
(FG774981) G1147P356RH20.T0 Anolis carolinensis pooled norma... 34 9.2 3
(FP103106) Zebrafish DNA sequence from clone CH73-69C10. 44 9.4 5
(AF275224) Colophina clematis 12S small subunit ribosomal RN... 32 9.4 2
(EJ764811) 1092963186463 Global-Ocean-Sampling_GS-30-02-01-1... 32 9.6 2
(EJ779547) 1093011946993 Global-Ocean-Sampling_GS-30-02-01-1... 32 9.7 2
(EK404677) 1095479007158 Global-Ocean-Sampling_GS-31-01-01-1... 38 9.8 3
(CZ768325) OC__Ba0124J07.r OC__Ba Oryza coarctata genomic cl... 34 9.8 2
(ET078515) QM0AAB6DA04RM2 CCER1 Citrus clementina genomic cl... 34 9.8 2
>(BJ349197) Dictyostelium discoideum cDNA clone:dda35p15, 3' end,
single read.
Length = 754
Score = 963 bits (486), Expect(2) = 0.0
Identities = 486/486 (100%)
Strand = Plus / Minus
Query: 675 tggaatgtcaatatcatctcaaaagaaggctatagaagagtttagaagtgatcaatgtaa 734
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 754 tggaatgtcaatatcatctcaaaagaaggctatagaagagtttagaagtgatcaatgtaa 695
Query: 735 tgttatagttgcaactagtgtagtggaagaaggattcgatgtaccagaatgtaatattgt 794
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 694 tgttatagttgcaactagtgtagtggaagaaggattcgatgtaccagaatgtaatattgt 635
Query: 795 aattagattagatccaccaacaaccgttactgctaatattcaatcaaggggtagattaag 854
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 634 aattagattagatccaccaacaaccgttactgctaatattcaatcaaggggtagattaag 575
Query: 855 aaatagggatagttatttctatggtattgtcaaagttgatgatccaagagaggataacat 914
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 574 aaatagggatagttatttctatggtattgtcaaagttgatgatccaagagaggataacat 515
Query: 915 ctatgagttctttaaaaatcaagaaagatatttagaagaggctattaatttcttaaaaac 974
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 514 ctatgagttctttaaaaatcaagaaagatatttagaagaggctattaatttcttaaaaac 455
Query: 975 tggtgaacttccaatatctttaaaacaacaaaactatacaactcaagttaatcaagttga 1034
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 454 tggtgaacttccaatatctttaaaacaacaaaactatacaactcaagttaatcaagttga 395
Query: 1035 tgaagaaatggatacaaattcctattttgcttctgctagtgctttggttcaagagatggt 1094
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 394 tgaagaaatggatacaaattcctattttgcttctgctagtgctttggttcaagagatggt 335
Query: 1095 tattcaagttaaaagacatacatttgattttggtatagcttgggaacatactcctgatgg 1154
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 334 tattcaagttaaaagacatacatttgattttggtatagcttgggaacatactcctgatgg 275
Query: 1155 ttctgg 1160
||||||
Sbjct: 274 ttctgg 269
Score = 121 bits (61), Expect(2) = 0.0
Identities = 61/61 (100%)
Strand = Plus / Minus
Query: 1168 aatgctattgctactttctatataaataaagaagctgcacattctcattctaaatctggt 1227
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 261 aatgctattgctactttctatataaataaagaagctgcacattctcattctaaatctggt 202
Query: 1228 c 1228
|
Sbjct: 201 c 201
Lambda K H
1.37 0.711 1.31
Matrix: blastn matrix:1 -3
Number of Sequences: 108600042
Number of Hits to DB: 1,371,122,634
Number of extensions: 88188612
Number of successful extensions: 7471600
Number of sequences better than 10.0: 49
Length of query: 1427
Length of database: 106,710,029,556
Length adjustment: 24
Effective length of query: 1403
Effective length of database: 104,103,628,548
Effective search space: 146057390852844
Effective search space used: 146057390852844
X1: 11 (21.8 bits)
S2: 22 (44.1 bits)
Dictyostelium discoideum cDNA Project Home