Dictyostelium discoideum cDNA Contig-U11200-1

Assembled

Chromosomal Location of Contig-U11200-1

Sequence Contig-U11200-1

AATTTAAAAT TCTTTTCTCA AAATAAACAG ACAGAGAGAA ATGAATAATA
ATATTAAATA TGTATTTTTA ATAATTGTAA CATTGGTATT TATTAATAAT
GTCTATTCAG AATCAACAAA AATTGGAGTT TTAAATAAAG ATGATTATGA
TTATATAGAT AAATTAGTTA AAGATTTATT CAAGGAAAAC CCTTTTCCAA
TTTTAAATGT AGATAAAGAT AAAACCTATT ATGACTACTG TTCAAAACCA
TTATTTAAAT GTAATAGTGA AACTGGTCAT TTATCAGGAA TGCATTTAAC
ATATGACGCA GATTTGTGCA AGATCAAATC ATTGAAAAAT GAAATCTCAA
AATACGATTT TACTATCATG GATAGTATTG AACTTTCATT ATTTCCATTT
GGTTCTCCAA AAATTTTAAG CAAACTCAAT GCTCGTACAG TGAAAATATC
ACGATGTCAT ATTGATTCGC TTTTAATTGA ACCAAACCCA AATACAAGAG
ATTTATTTGT TGACTCAAAT GACAATGTTA AAGTAGTGAT GAAAACTATG
GGAATGATTG AAAATTTCAC TCTCACAAGT TCATTTGTAA GAAATTCATC
AAAAACCATT ACATTTGAAG TAAATGAAGA CGAAGATGAA TTTAATTTTA
AAAATTGGGA CGTTTATTCA ACAAATGTTC CTCTTTTCAA ATATTTTCAT
TTTGATACAT TAAAACTTAC AATTTTATCA AATGAAGGTC TTGACAAAAC
TAATAAATTT GAAGACTATA CTGAGATTAC AAATTTTTAT TTGTATAAAT
ATAAATATTT TGATTTTGAT CCTATTCCAT TCCCAAGTGA AATTTTTATA
GATAATCAAG AAACCATGTT TTTTGGTACA ACATTTAGAA TTTCACCTCC
AAATGATTAT TTGGATATTT CAAAAGCATC TTCCTTACTT GGATTGTCAT
TCTCAAATGC AGAGGGTTTT TTTTATAACG ATAACAACAC ACTCCAATTC
CCATTTTCAA AATTCCCTGA AGAACTTGAT CAATTTTTTT ATAAAAATAA
CA-------- --CCGATAAA TACACAATTG AAGGTATATT TTTCTCTTCA
TTAATATCTG ATGTTTCAGT TTCATTGCTT GAAGAGGGTG ATGACGAATA
CCTTTCTCAT CCATGTAAAG TATCAGAGTC AACATTCTAT TCAATCACTG
CATCATGTCC AAATGAATTA CTTTTAAATT TAATTCAAGT TAAAGTGGGT
CAACTTGATA CTGGTCGTGT TGAATTCAAT TCATCTTCGT CCTATAGTAA
AATGTGTAAA TCGGAATGTA GTGATAAAGT AAAAGCAAAT GGTGGAGGTT
GCAATTATGA TGTTGGTCTT TGTAAATGTC ATAAAAGTAA TTGTAGATCG
GTTACTGTCG AGGTCACTGG TCAATGTCTC AATGATGATA ATGGTGATGC
CTATTGTAGT TGTAACGAAA GATGGGAGGG TACCCTTTGC GAGATCGGAA
CTTGTTTTGG TTATGATGGT TGTAATTCTC CAAAAGGTGA ATGTGATAAA
GCAACATCAA TGTGTCATTG TTTAGATAAA AATTTTAATA ATGATTATTG
TAATGGTACT AGAACTATTC CAGATGGTAA AAATAACAAT AATAATAATA
ACAACAACGG TGGTGATGGA GAAAATGGTC CATCATATGC CGTTGGAGTT
ATCTTCCTTT TCGTCGTTAT CATTGGTGTT GCTATCTTTA TCTATAAAAG
ATATATTGAT GGTTCCTCAA AATCAACCAC TTCAAATGGT GTCAAATTTA
AAGTTTTAAG TTCAAAACAA GAAGATGATA AGAAGATAAT TTATCAACAA
CAAGAAAAGG TTANAANAAA GAAA

Translated Amino Acid Sequence Contig-U11200-1

i*NSFLKINRQREMNNNIKYVFLIIVTLVFINNVYSESTKIGVLNKDDYDYIDKLVKDLF
KENPFPILNVDKDKTYYDYCSKPLFKCNSETGHLSGMHLTYDADLCKIKSLKNEISKYDF
TIMDSIELSLFPFGSPKILSKLNARTVKISRCHIDSLLIEPNPNTRDLFVDSNDNVKVVM
KTMGMIENFTLTSSFVRNSSKTITFEVNEDEDEFNFKNWDVYSTNVPLFKYFHFDTLKLT
ILSNEGLDKTNKFEDYTEITNFYLYKYKYFDFDPIPFPSEIFIDNQETMFFGTTFRISPP
NDYLDISKASSLLGLSFSNAEGFFYNDNNTLQFPFSKFPEELDQFFYKNN---

---DKYTIEGIFFSSLISDVSVSLLEEGDDEYLSHPCKVSESTFYSITASCPNELLLNLI
QVKVGQLDTGRVEFNSSSSYSKMCKSECSDKVKANGGGCNYDVGLCKCHKSNCRSVTVEV
TGQCLNDDNGDAYCSCNERWEGTLCEIGTCFGYDGCNSPKGECDKATSMCHCLDKNFNND
YCNGTRTIPDGKNNNNNNNNNGGDGENGPSYAVGVIFLFVVIIGVAIFIYKRYIDGSSKS
TTSNGVKFKVLSSKQEDDKKIIYQQQEKVXXKK

Homology Contig-U11200-1 vs CSM-Contig

Sequences producing significant alignments:                        (bits)  Value


Contig-U11200-1 (Contig-U11200-1Q) /CSM_Contig/Conti...  3554  0.0
Contig-U10968-1 (Contig-U10968-1Q) /CSM_Contig/Conti...    54  6e-07
Contig-U14831-1 (Contig-U14831-1Q) /CSM_Contig/Conti...    48  4e-05
Contig-U11145-1 (Contig-U11145-1Q) /CSM_Contig/Conti...    48  4e-05
Contig-U14523-1 (Contig-U14523-1Q) /CSM_Contig/Conti...    46  1e-04
Contig-U14235-1 (Contig-U14235-1Q) /CSM_Contig/Conti...    46  1e-04
Contig-U13529-1 (Contig-U13529-1Q) /CSM_Contig/Conti...    46  1e-04
Contig-U13134-1 (Contig-U13134-1Q) /CSM_Contig/Conti...    46  1e-04
Contig-U12168-1 (Contig-U12168-1Q) /CSM_Contig/Conti...    46  1e-04
Contig-U14665-1 (Contig-U14665-1Q) /CSM_Contig/Conti...    34  0.53

Homology Contig-U11200-1 vs DNA

Sequences producing significant alignments:                  (bits) Value  N


(BJ441293) Dictyostelium discoideum cDNA clone:ddv46c12, 3' ...  1580   0.0    1
(BJ436745) Dictyostelium discoideum cDNA clone:ddv32i04, 3' ...  1550   0.0    1
(BJ358300) Dictyostelium discoideum cDNA clone:dda56m21, 3' ...  1540   0.0    1
(BJ442502) Dictyostelium discoideum cDNA clone:ddv50g05, 3' ...  1489   0.0    2
(BJ348686) Dictyostelium discoideum cDNA clone:dda34c03, 3' ...  1481   0.0    2
(BJ437198) Dictyostelium discoideum cDNA clone:ddv33c14, 3' ...  1479   0.0    2
(BJ356118) Dictyostelium discoideum cDNA clone:dda59f08, 3' ...  1463   0.0    1
(BJ444863) Dictyostelium discoideum cDNA clone:ddv57m18, 3' ...  1346   0.0    3
(BJ441284) Dictyostelium discoideum cDNA clone:ddv46b08, 3' ...  1318   0.0    1
(BJ445060) Dictyostelium discoideum cDNA clone:ddv58g08, 3' ...  1312   0.0    2

Homology Contig-U11200-1 vs Protein

Sequences producing significant alignments:                      (bits) Value


(Q8I7T3) RecName: Full=Substrate-adhesion molecule; Flags: Precu...    51   1e-04
AL110498_8(AL110498|pid:none) Caenorhabditis elegans YAC Y64G10A...    49   8e-04
AC115598_37(AC115598|pid:none) Dictyostelium discoideum chromoso...    46   0.005
T27283(T27283)hypothetical protein Y64G10A.f - Caenorhabditis el...    44   0.015
AC116956_34(AC116956|pid:none) Dictyostelium discoideum chromoso...    44   0.026
CR954216_234(CR954216|pid:none) Ostreococcus tauri strain OTTH05...    43   0.034
DQ311330_1(DQ311330|pid:none) Bombyx mori Wnt inhibitory factor ...    43   0.034
BC142880_1(BC142880|pid:none) Danio rerio similar to alpha-2-mac...    43   0.045
U77586_1(U77586|pid:none) Strongylocentrotus purpuratus integrin...    42   0.077
T22759(T22759)hypothetical protein F55H12.3 - Caenorhabditis ele...    41   0.13