Dictyostelium discoideum cDNA Contig-U11196-1

Assembled

Chromosomal Location of Contig-U11196-1

Sequence Contig-U11196-1

AATTTTCGAA ACAATTAAGC AGATCACCAA CAGTTAAAAT AATATTAATA
ATAACAATAA TATAGTAATA TCTATTTATT TATATTTATA AATTTTTTTT
TTTTAAAAAA AGAGAAAAAA TGCCACTTCA TGGAAAAGAT CCCTTTGAAT
TAAATAAAAC TAGAGTAAAA TCTGGNGAAN AATATTTCGT TATTAAATTC
ACAAAAGAAC ATTTTAAAAG ATATAAGGAT TATATTGATA GATATGAGTT
ATATAGACAA AAGATTTGGA CATGTTCAAT TACAGGTAAA CAAAATTTAA
CATTTGAAGA AGCATTATTA AGTGAAAAGA ATGCTTCTGA AAAAGTTTCA
AAAGTGTCTG AATTATTATT ACCACATTGT TTAAAATTTA TTCAATATAA
GGAAATTACA CTTGAAGAAA TGACAAATCA ATTATATGAA TTTTTATTGA
TGAATTATTA TCCAGGTGAA ATTGTATCTT TTAAAAAAGC AAATGTTAAA
TATACTGGAA GAATCATAGA ATTATTGGAA AACTATAATG AATCTGATGA
ACAATCAGAT AATGAACAAC AAAAGAAATC ATCATCATCT TCTTCAACAA
CAACAACAAC AACAACACCA ACTACACCAC CAACAACAAC CACCACAACA
TCAAGTTCAA TCAATGCATT ATCAGCAATA CCAATACCAA AGAAAGAAAT
TAAATTACAA TTGTATAGTG ATGATGAAAA TGAAGAAGAG GATGAAAAAA
ACAATGGTGA CACCTCTTCT GATAAAAAAG GTGAAAAAGA AAAAGAAAAA
GAAAAAGAAA AAGAAAAAGA AAAAGAAAAA GAAAAAGAAA AAGAAAAAGA
AAAAGAAAAA GAGAAAGAAA AAGAAAAAGA AAAAGATAGT GATACTAAAT
CAGTTAGAAA ATATGTTGAT CCAAGAAAGA AATTAGATTC AATTAAAAAA
TATTATAAAA TTTATGTTGA TTCTCAAGGT AAAAACTTTA TTATCAATAT
TAGGAGATAT CCAAAAGAGA GAACCACCAA TCTTTAAACC AATGGTAAAA
GATACCATTA AAACTGTGGC AAAAAAAAAC AAAACATCTT GGTGGTTTTT
GGGAGGTTGA ACCAGAATTA ATTAAAAAGT ATAATTTAGA GGGTTTGAAA
ATACCATCAT CTGTAAGGAA AGAGGTTGAA CAACATCAAG TTCAATCAAT
GCATTATCAG CAATACCAAT ACCAAAGAAA GAAATTAAAT TNCAATTGTA
TAGT------ ----ATCTCA TATTCGTTTA ATGAAAACCA TCTTCACTTT
ACCATCATAT TCAAGTGGAA CACCAAAGAA AACCTTTGGT GGCAAAGCCA
TTACCGATCG TAATTGGTTA GCAACACTCA GAGCATACTT TCAAAATGAA
GTTAAAAGAA TTGCAATCGA AGAAAAAGAG AAACAAGAGA AATTAAAACA
ATTGGAAGAA CAAAATATTA GAATGTTAAA TTTAGCAAAT GAATTACCAG
GTTCTGATGA TGAAGACGAT GAAATGAAAT TAGATGAAGA TGGTAATGAA
ATTAAAAAAG ATGTTGAAAT GAAAGATAAT GATGGAACTA AAGATACTAA
AAAAGATGAT GAAGAGAATG AAGAAGAGGA GGAAGAAGAG GAAGAAGAAG
AAGAAGAAGT TGCATCTGAT GAAGGTGAAG AAGAATGGAA AGAAGAAAAT
GAAATTATTA CATCTGCAGA TGCAAATACA ATTTGTAAAG TTTTAAAGAA
AAAGAATTAT TTTAAACTCT CTGTTGAAGA AAGAATTTAC ATTCTCGCTT
ATTTAGTTAA ACAAACTATC GCATCTGAAA AGATTCGTAA ACATTTGGAA
AAGAATGTTG AATTGGGTAA TGAAGTTAAA CAAGAGAAAA AAGGTATCAT
CTTAGAGGAA AAACAATTAA AACAAGATGA TGCTGCCGCT GCTGCTGAGG
ATGATGATGA AAATAATGAA GATGATGAAG AACAACAACA ACAAGAAGTT
AAAAAACCAA AGGGTGCTAA ACAAAAGAAA CCAATTACTC CTGTCGTAGA
AAAAGAAATC GAAAAGCTAG AAAAGAAATT AGAGATTTTA GATGAAAAGT
TGGAGAAATA TTCCACACGT TTAGAATCNC TTGGAAGAGA TAGAAACTAT
AGAAACTATT GGTATTGGTA TCAATTGCCA AGTAAAATTT ATGTTGAAAA
TGAAAATGGT GGTTGGGAAT ACTACTCTAG TAAGAAGGAG TTGGATGACC
TCATCAAGTA TTTGGATAAT ANAGGTATTN GTGAAANAAA GCTTTTATTC
AATATTAAAC CAAAATATGA TTTCATTGTT AGTCAATTAG AGAAAAAGAA
TAAAGAAATT ATCGAACAAA TTCAATTTGA ATCAAAAAGA TCTCAACGTA
TTAAACAACT TTATACTGAA AAATCCTATA TATCTGGGAA AATAAATANA
TTATTAAAAA AAAAAACAAT AAAAATA

Translated Amino Acid Sequence Contig-U11196-1

ifetikqitns*nninnnnnivisiylyl*ifff*kkrknatswkrsl*ik*n*skiwxx
ifry*ihkrtf*ki*gly**i*vi*tkdldmfnyr*tkfni*rsiik*kecf*ksfksv*
iiittlfkiysi*gnyt*rndksii*ifidellsr*ncif*kskc*iywknhriigkl**
i**tir**ttkeiiiiffnnnnnnntnyttnnnhhnikfnqciisntntkern*itiv**
**k*rrg*kkqw*hlf**kr*krkrkrkrkrkrkrkrkrkrkrkrkrerkrkrkr**y*i
s*kic*skkeirfn*kil*nlc*fsr*klyyqy*eiskrenhqslnqw*KIPLKLWQKKT
KHLGGFWEVEPELIKKYNLEGLKIPSSVRKEVEQHQVQSMHYQQYQYQRKKLNXNCI---

---SHIRLMKTIFTLPSYSSGTPKKTFGGKAITDRNWLATLRAYFQNEVKRIAIEEKEKQ
EKLKQLEEQNIRMLNLANELPGSDDEDDEMKLDEDGNEIKKDVEMKDNDGTKDTKKDDEE
NEEEEEEEEEEEEEVASDEGEEEWKEENEIITSADANTICKVLKKKNYFKLSVEERIYIL
AYLVKQTIASEKIRKHLEKNVELGNEVKQEKKGIILEEKQLKQDDAAAAAEDDDENNEDD
EEQQQQEVKKPKGAKQKKPITPVVEKEIEKLEKKLEILDEKLEKYSTRLESLGRDRNYRN
YWYWYQLPSKIYVENENGGWEYYSSKKELDDLIKYLDNXGIXEXKLLFNIKPKYDFIVSQ
LEKKNKEIIEQIQFESKRSQRIKQLYTEKSYISGKINXLLKKKTIKI

Homology Contig-U11196-1 vs CSM-Contig

Sequences producing significant alignments:                        (bits)  Value


Contig-U11196-1 (Contig-U11196-1Q) /CSM_Contig/Conti...  1302  0.0
Contig-U00957-1 (Contig-U00957-1Q) /CSM_Contig/Conti...    50  1e-05
Contig-U13776-1 (Contig-U13776-1Q) /CSM_Contig/Conti...    48  5e-05
Contig-U12316-1 (Contig-U12316-1Q) /CSM_Contig/Conti...    48  5e-05
Contig-U09374-1 (Contig-U09374-1Q) /CSM_Contig/Conti...    48  5e-05
Contig-U02182-1 (Contig-U02182-1Q) /CSM_Contig/Conti...    46  2e-04
Contig-U14826-1 (Contig-U14826-1Q) /CSM_Contig/Conti...    44  7e-04
Contig-U14704-1 (Contig-U14704-1Q) /CSM_Contig/Conti...    44  7e-04
Contig-U06407-1 (Contig-U06407-1Q) /CSM_Contig/Conti...    44  7e-04
Contig-U14899-1 (Contig-U14899-1Q) /CSM_Contig/Conti...    42  0.003

Homology Contig-U11196-1 vs DNA

Sequences producing significant alignments:                  (bits) Value  N


(BJ356306) Dictyostelium discoideum cDNA clone:dda59l23, 3' ...   640   0.0    2
(BJ405168) Dictyostelium discoideum cDNA clone:dds30f19, 3' ...   617   0.0    2
(BJ348545) Dictyostelium discoideum cDNA clone:dda33f18, 3' ...   603   0.0    3
(BJ407454) Dictyostelium discoideum cDNA clone:dds38i18, 3' ...   652   0.0    2
(BJ425611) Dictyostelium discoideum cDNA clone:ddv56e07, 5' ...   898   0.0    2
(BJ395958) Dictyostelium discoideum cDNA clone:dds40f24, 5' ...   880   0.0    3
(BJ350497) Dictyostelium discoideum cDNA clone:dda40f02, 3' ...   632   0.0    2
(BJ352779) Dictyostelium discoideum cDNA clone:dda47l19, 3' ...   504   0.0    7
(BJ395367) Dictyostelium discoideum cDNA clone:dds38i18, 5' ...   702   0.0    2
(BJ435829) Dictyostelium discoideum cDNA clone:ddv28g13, 3' ...   341   0.0    3

Homology Contig-U11196-1 vs Protein

Sequences producing significant alignments:                      (bits) Value


(Q54ST3) RecName: Full=DDT domain-containing protein DDB_G0282237;    439   e-130
BT033831_1(BT033831|pid:none) Zea mays full-length cDNA clone ZM...   103   2e-20
AK067393_1(AK067393|pid:none) Oryza sativa Japonica Group cDNA c...   102   9e-20
CR855148_6(CR855148|pid:none) Oryza sativa genomic DNA, chromoso...    97   4e-18
AL606452_10(AL606452|pid:none) Oryza sativa genomic DNA, chromos...    81   2e-13
BC129279_1(BC129279|pid:none) Danio rerio bromodomain adjacent t...    75   1e-11
BC142788_1(BC142788|pid:none) Danio rerio bromodomain adjacent t...    75   1e-11
BC093275_1(BC093275|pid:none) Danio rerio bromodomain adjacent t...    75   1e-11
BC081390_1(BC081390|pid:none) Danio rerio bromodomain adjacent t...    73   6e-11
CP000498_188(CP000498|pid:none) Pichia stipitis CBS 6054 chromos...    71   2e-10