Dictyostelium discoideum cDNA Contig-U11163-1

Assembled

Chromosomal Location of Contig-U11163-1

Sequence Contig-U11163-1

TATTTCATTG GTCGTCCAGA TTATCGTGCT TCCGATTTCT ATGTTGAAAT
CGATAAACTT CATTATAAAC AAATACCAAC TGAAAGTTTT CTTTGTTCAA
AAATTTCTAA AAAATTCTCA AAAAATGAAT ATATCACATT GATTCAAGCT
TGTAAGAAAA GGTTACCTTC AAAAATTAAA TTCTTTGAAG GTGATAAAGC
AAATTTACCA AAGGAGGTCT ATTTAGCCGG TGAAAAAATC AAATGGGTCT
CTTGTACACT CATGGATAGT CAAAATCCTC CAAAAGAAGT TGAAAGAAAA
ATCATCGAGG AAGAATCCTA CAAAATAATG TTTAGTGTAA TCTATCAACC
AACCGGTGAA AATGTACATA AAATGGAAAC TAGTGTCTTC TATGACTCTT
CACGTGTTTC TTTTGGTGAT ATAGATTGTT TCAAACGTAC TGGTACTTAT
AGTTTAATTT TCGAATGTAA TGATAAATCT GTTAAAAAAG CAACTCATTT
CGTTTCAGTA GTTGCTGGTA AACCAACTTC AATTAAAGCA ACATTGGAAG
GTATTGAAGA TATTAAATCT TTAAAAGTTC AAATTGGTCA ACAATTACCA
CCTCTTTTAA TCTCTTTAAT TGATAATGAT AGTAATTTAG TATCAATAAA
TCAAATACCA AAGAAATTAC AATTTAAAGC ATTTTCATTA GATGATGATG
AAAATGAAGA TAATGATTCT CAAACTTTAT CATCATCTCC ACCACAAGAT
AAAGATGATA AAATGGATAC AGATGAAATA AATAATAATA GTAATAGTAA
TAGTAGTAAT AATAATAATA ATATTAATAG TAATGGTATT GGTTTAATTG
GTGGTAAGGA AATTACATTA AGTAAATCAA ATATAACAAG TGAATTAGTT
AATAATCAAA TTATTGTAAA AGGTTTAGTA TTACCAAAAG CAGAATTAAA
TGACGAATCA GAATTATTGG TAACTATTCA AATTGTTATG GATGAATTTA
AATTAAGAAT ACAACCTTTT ACATTGATTT CAGGTGAACC AGTTACAATG
ACATTCACAG AGCAATTAAC ATTTATAGAT TCACCAAAAG GTCAATTAAA
ACCAAATGTT GATGAATTGG ATGGTTATAT GAATCTAGAC TTATTTACCT
CATTTCTATG TTTTTGTAAA TGATAAAGAT GGTAACATTT GTAGATTACC
ATCAAAGAAA CCAGTTTCAA CCATAACAAA TAGTACACAA ACTACAGGAA
GAGGTAGAAA ACCAAAACAA CAAGTTCAAC AAGCTTCAGC CATGGCAGAG
AATCCACCAT TTTATATTAT GGTTAGATCG GATAGTTTTG ATGAATCAAT
TTATTATGTT TGCGATGAAA AAGGTTGTTT CTCATTATGT ACTTATACAA
TTAGTGGTAT TACAAAAAAT CCAAGAGTTA CTCCACCACC AACAGCAATT
TTAATTCATG AAAAAGTTGA AAAAGATTTT GAACCTGATG AACCTACTAC
AACTATAACA ACAACACAAT CAAAAAATAA AAAGAAACAA CAACAACAAC
AACAAGAACA AAATTCTTAT TCAATTGCAA CAATTAGTTT TACATTATTT
AAAGATATGA ATGAGTTATT TACAGTATCA CAAAAAATTA AAATTTTACC
ATCATTTAAA CCATCTTATA TTACATTACA TCCATTAACT GATATTATTG
AGGTTGATAA AGATTCATTT ACAACTCAAG CTTCAGCAGA AATTAAATTT
GGTATAAAAA TTTTAAGTGC TGGTGGTGGT AATAGAGGTC CTTTCTTATT
GAATGGTTTA ATTGGATCAG TTCAACCTGG TTGGTCACCA AAAACATTGG
ATTTCCAAAT GAATAGTACT GCAAGTGATT CAATTGCCAC TGGTAGTATG
GTGATTTTAC CAACGATCGT TGCCGATAGA AATACACGTT TCAATAGATA
TAATGTTTCA GTCGATATTC CATTGGGTAA ACAAACGGTG AAACAATTCT
CTTTAATGGC AGAGAATAAA GATCATATTA TCACATTGAA AAAGGATTTC
ACAATTCAAA CCGTTGGAGG TGCACCATCT TATTTCGTTT GTAATTTGGG
TCGTGGTGTT GGTGCCGCTA GATGTGATAG TGAAATCACA TTGGAGATTG
GATTGAATGA TCGTCGTCAT AATCCTGTCG CACCAAGTAA TTTAAAATCA
ACAAAACCAA TTGAACCATT CTTTGAACTT TCTTATCAAC AAGGTTATAG
CTCTCAAATT CCATGTTTCA TAAAGAGTCA AAGTGTTGGT GAGTTTGATG
TCGATAAAAA TATTTATCCT TGTAAGGTAA CCGTGGTTGG ATTTGGTAAA
CTAAACATTA AAGTCATTGA TAAAAGTCA- ---------A CTGTTGGCCT
ACTGGCCATC CACATATACC TTCAATTCCA ACTATTGAAC CATTAAGAAT
TGAATTCTTT TATGCAAAAT CAAAAAGAAT CATTAGATAA AAAAGTTAAA
CTTCAACAAC AACGTGTTAT ACTAGGTAAT GAAATTAGTG ATATTGATAA
AGAACTTGAG GAATTAAAAC AACAACAATC GAAAATTTTA AATGAATACA
CCAATTCAAA ACACCAAGCC GATGAAATAT TTAATCATCT TTCATCATTA
ATACCAAATT TAAATCCTGA AGCAAAAACT AATCCCGAGA CTATAAAGAA
ATTAATTTCA CAAACAACTC AAGAGATTGA AGAGTTAACC AATAGTAATC
GTCGTCGTCC ACCTTATCCA AATAATCCAA CATCTCGTGA ACTTTTCGAA
ATACAACGTT CCACCAATGA TTCTGGTATA GTTGGTGTAA TTATGGATTT
GTTTTTCGTT GATGATGAAC GTTTAGGTCA ATGTTTAGCC AACTTTTTAA
AATCTAAAAT GGAGGGAGTT GTATTCCAAA ACAAACAAAC CTTTAGTCAT
TATTATGATC GTTATAGTAG TAAATCGGTT CAACCGGTTT TCTTTGTTTC
TTTGGATACT CTAATACCTT TTACACCAAA GAAAAGATAT CAAAATGGAA
GTCAACAATC TCAATACCCT CAACCAAACT CCTCCAAATC AATTGGATAT
TCAAACCTAT GATGGAGCAC CAACTGCTGG TTTCGTTGGT TTCGTTGTAA
ATAAAGTTCA ATTAAGAGAA AAACATGAAT TCCTTAGACC AACACTTTGC
TTCACTCTAT TCAAAGAGAT GATGATTTTC AATACCCTCA AACAAGCTAT
GGAATATAAG AATTTTGCCG CTCAAAGAAA ATTCCTTTCA CCACCAATCA
TTTGCCTAGA GAATGGTGAG TATTTGGATT CTTCTGGTTT CGTTGAAATT
GGTAGAGTTC CAAACTCTAG AAATTGGCAT CAAAATTTAG GTCAACTTCC
TCCAAATGAA ACACCAGAGT TTGCTCAATT AAAAGCTAAA AAGAATGTAC
TAGAGGAATA TCGTATCATT AAACATAAAA TGCATTCAAA TAAAAAAGGT
GCTGAAGTTC AAGATTATAT GAATAAAATA GATGGTTTAA AACAACAAAA
GAAAGAAAAA TCCGCACAAT TATTACAAGT TACAAATGAA ATTTCAAATA
TATAAATAAA TATTTTAAAT AAAATTTTAA ATAAAATAAA ATAAAATAAA
NNATAAAGGN ATTA

Translated Amino Acid Sequence Contig-U11163-1

islvvqiivlpismlksinfiinkyqlkvffvqkflknsqkmnish*fklvrkgylqkln
slkvikqiyqrrsi*pvkksngslvhswivkilqkklkekssrknptk*clv*sinqpvk
myikwklvssmtlhvfllvi*ivsnvlvliv*fsnvminllkkqlisfq*llvnqlqlkq
hwkvlkilnl*kfklvnnyhlf*sl*limivi*yq*ikyqrnynlkhfh*mmmkmkimil
klyhhlhhkikmikwiqmk*iiivivivviiiiilivmvlv*lvvrklh*vnqi*qvn*l
iikll*kv*yyqkqn*mtnqnyw*lfkllwmnln*eynllh*fqvnqlq*hsqsn*hl*i
hqkvn*nqmlmnwmvi*i*TYLPHFYVFVNDKDGNICRLPSKKPVSTITNSTQTTGRGRK
PKQQVQQASAMAENPPFYIMVRSDSFDESIYYVCDEKGCFSLCTYTISGITKNPRVTPPP
TAILIHEKVEKDFEPDEPTTTITTTQSKNKKKQQQQQQEQNSYSIATISFTLFKDMNELF
TVSQKIKILPSFKPSYITLHPLTDIIEVDKDSFTTQASAEIKFGIKILSAGGGNRGPFLL
NGLIGSVQPGWSPKTLDFQMNSTASDSIATGSMVILPTIVADRNTRFNRYNVSVDIPLGK
QTVKQFSLMAENKDHIITLKKDFTIQTVGGAPSYFVCNLGRGVGAARCDSEITLEIGLND
RRHNPVAPSNLKSTKPIEPFFELSYQQGYSSQIPCFIKSQSVGEFDVDKNIYPCKVTVVG
FGKLNIKVIDKS---

---CWPTGHPHIPSIPTIEPLRIEFFYAKSKRIIR*ks*tstttcytr**n**y**rt*g
iktttienfk*ihqfktpsr*ni*ssfiintkfks*skn*srdykeinftnnsrd*rvnq
**sssstlsk*snis*tfrnttfhq*fwyswcnygfvfr***tfrsmfsqlfki*nggsc
ipkqtnl*sll*sl***igstgflcffgysntfytkekiskwkstisipstkllqinwif
kpmmehqllvslvsl*ikfn*eknmnsldqhfaslyskr**fsipsnklwnirilplken
sfhhqsfa*rmvsiwillvslklvefqtleigiki*vnflqmkhqslln*klkrmy*rni
vslnikciqikkvlkfkii*ik*mv*nnkrkknphnyyklqmkfqiyk*if*ikf*ik*n
kixxkgi

Homology Contig-U11163-1 vs CSM-Contig

Sequences producing significant alignments:                        (bits)  Value


Contig-U11163-1 (Contig-U11163-1Q) /CSM_Contig/Conti...  3949  0.0
Contig-U11567-1 (Contig-U11567-1Q) /CSM_Contig/Conti...    46  3e-04
Contig-U11394-1 (Contig-U11394-1Q) /CSM_Contig/Conti...    42  0.004
Contig-U13615-1 (Contig-U13615-1Q) /CSM_Contig/Conti...    40  0.017
Contig-U13362-1 (Contig-U13362-1Q) /CSM_Contig/Conti...    40  0.017
Contig-U12300-1 (Contig-U12300-1Q) /CSM_Contig/Conti...    40  0.017
Contig-U11295-1 (Contig-U11295-1Q) /CSM_Contig/Conti...    40  0.017
Contig-U11110-1 (Contig-U11110-1Q) /CSM_Contig/Conti...    40  0.017
Contig-U07120-1 (Contig-U07120-1Q) /CSM_Contig/Conti...    40  0.017
Contig-U06557-1 (Contig-U06557-1Q) /CSM_Contig/Conti...    40  0.017

Homology Contig-U11163-1 vs DNA

Sequences producing significant alignments:                  (bits) Value  N


(BJ336007) Dictyostelium discoideum cDNA clone:dda52j09, 5' ...  1227   0.0    1
(BJ445660) Dictyostelium discoideum cDNA clone:ddv60p03, 3' ...  1187   0.0    2
(BJ425124) Dictyostelium discoideum cDNA clone:ddv54p14, 5' ...  1158   0.0    1
(BJ355335) Dictyostelium discoideum cDNA clone:dda56a14, 3' ...  1148   0.0    3
(BJ326210) Dictyostelium discoideum cDNA clone:dda15b22, 5' ...  1134   0.0    1
(BJ348120) Dictyostelium discoideum cDNA clone:dda32b10, 3' ...  1005   0.0    2
(BJ409568) Dictyostelium discoideum cDNA clone:dds42e16, 3' ...   844   0.0    2
(BJ354055) Dictyostelium discoideum cDNA clone:dda52j09, 3' ...   844   0.0    2
(BJ443947) Dictyostelium discoideum cDNA clone:ddv54p14, 3' ...   801   0.0    3
(BJ342996) Dictyostelium discoideum cDNA clone:dda15b22, 3' ...  1043   0.0    1

Homology Contig-U11163-1 vs Protein

Sequences producing significant alignments:                      (bits) Value


AC116977_32(AC116977|pid:none) Dictyostelium discoideum chromoso...   782   0.0
AF027728_1(AF027728|pid:none) Xenopus laevis kinesin-related pro...    44   0.043
CP001107_1897(CP001107|pid:none) Eubacterium rectale ATCC 33656,...    40   0.63
CP000123_229(CP000123|pid:none) Mycoplasma capricolum subsp. cap...    39   1.1
AM270339_8(AM270339|pid:none) Aspergillus niger contig An15c0120...    39   1.1
AE010300_1308(AE010300|pid:none) Leptospira interrogans serovar ...    39   1.4
AE016823_2343(AE016823|pid:none) Leptospira interrogans serovar ...    39   1.4
CP000806_3293(CP000806|pid:none) Cyanothece sp. ATCC 51142 circu...    39   1.8
CP000348_1780(CP000348|pid:none) Leptospira borgpetersenii serov...    39   1.8
AF503772_9(AF503772|pid:none) Enterococcus faecalis plasmid pAMa...    39   1.8