Homology Contig-U11111-1 vs Protein
Query= Contig-U11111-1 (Contig-U11111-1Q) /CSM_Contig/Contig-U11111-1Q.Seq.d
(2533 letters)
Database: nrp_A
3,204,285 sequences; 1,040,966,779 total letters
Searching..................................................done
Score E
Sequences producing significant alignments: (bits) Value
AC117070_46(AC117070|pid:none) Dictyostelium discoideum chromoso... 72 1e-10
AE014186_457(AE014186|pid:none) Plasmodium falciparum 3D7 chromo... 48 0.002
CP001184_592(CP001184|pid:none) Ureaplasma urealyticum serovar 1... 46 0.006
AE014187_310(AE014187|pid:none) Plasmodium falciparum 3D7 chromo... 44 0.029
(Q25802) RecName: Full=DNA-directed RNA polymerase subunit beta'... 44 0.038
AL844502_157(AL844502|pid:none) Plasmodium falciparum 3D7 chromo... 42 0.084
AM285312_30(AM285312|pid:none) Spiroplasma citri GII3-3X chromos... 41 0.19
CP000016_362(CP000016|pid:none) Candidatus Blochmannia pennsylva... 41 0.19
AE014187_662(AE014187|pid:none) Plasmodium falciparum 3D7 chromo... 40 0.32
AL844509_254(AL844509|pid:none) Plasmodium falciparum 3D7 chromo... 40 0.32
AF409138_133(AF409138|pid:none) Lumpy skin disease virus isolate... 40 0.42
AC115612_13(AC115612|pid:none) Dictyostelium discoideum chromoso... 40 0.54
AE014186_382(AE014186|pid:none) Plasmodium falciparum 3D7 chromo... 39 0.93
AE014187_245(AE014187|pid:none) Plasmodium falciparum 3D7 chromo... 39 0.93
(O77392) RecName: Full=Probable inorganic pyrophosphatase; ... 39 0.93
CP000013_65(CP000013|pid:none) Borrelia garinii PBi, complete ge... 39 1.2
AX601917_1(AX601917|pid:none) Sequence 9 from Patent WO02092628. 38 1.6
CP001083_3248(CP001083|pid:none) Clostridium botulinum Ba4 str. ... 38 1.6
A71622(A71622)hypothetical protein PFB0155c - malaria parasite (... 38 1.6
CP001581_3320(CP001581|pid:none) Clostridium botulinum A2 str. K... 38 1.6
AL031745_66(AL031745|pid:none) Plasmodium falciparum DNA from MA... 38 1.6
AL844504_164(AL844504|pid:none) Plasmodium falciparum 3D7 chromo... 38 1.6
AC124218_15(AC124218|pid:none) Medicago truncatula clone mth2-30... 38 1.6
CP001279_827(CP001279|pid:none) Nautilia profundicola AmH, compl... 38 1.6
FN357821_5(FN357821|pid:none) Schistosoma mansoni genome sequenc... 38 2.1
AE014186_272(AE014186|pid:none) Plasmodium falciparum 3D7 chromo... 38 2.1
CP000102_1066(CP000102|pid:none) Methanosphaera stadtmanae DSM 3... 38 2.1
BX908798_1750(BX908798|pid:none) Parachlamydia-related symbiont ... 38 2.1
AJ749949_1577(AJ749949|pid:none) Francisella tularensis subsp. t... 37 2.7
AL844504_111(AL844504|pid:none) Plasmodium falciparum 3D7 chromo... 37 2.7
CR940352_607(CR940352|pid:none) Theileria annulata strain Ankara... 37 2.7
CP001130_484(CP001130|pid:none) Hydrogenobaculum sp. Y04AAS1, co... 37 2.7
AE014187_377(AE014187|pid:none) Plasmodium falciparum 3D7 chromo... 37 2.7
BA000031_1390(BA000031|pid:none) Vibrio parahaemolyticus RIMD 22... 37 2.7
AC117176_59(AC117176|pid:none) Dictyostelium discoideum chromoso... 37 2.7
AL844508_163(AL844508|pid:none) Plasmodium falciparum 3D7 chromo... 37 3.5
AL844509_291(AL844509|pid:none) Plasmodium falciparum 3D7 chromo... 37 3.5
AL844509_627(AL844509|pid:none) Plasmodium falciparum 3D7 chromo... 37 3.5
CP001176_4795(CP001176|pid:none) Bacillus cereus B4264, complete... 37 3.5
CP000777_2595(CP000777|pid:none) Leptospira biflexa serovar Pato... 37 3.5
CP000962_3098(CP000962|pid:none) Clostridium botulinum A3 str. L... 37 3.5
FJ406883_1(FJ406883|pid:none) Plasmodium falciparum isolate T9/9... 37 3.5
(Q54DA1) RecName: Full=Dr1-associated corepressor homolog; AltNa... 37 3.5
CP000312_921(CP000312|pid:none) Clostridium perfringens SM101, c... 37 3.5
AL844506_138(AL844506|pid:none) Plasmodium falciparum 3D7 chromo... 37 4.6
AE014186_139(AE014186|pid:none) Plasmodium falciparum 3D7 chromo... 37 4.6
CP000439_1441(CP000439|pid:none) Francisella tularensis subsp. n... 37 4.6
AE000793_9(AE000793|pid:none) Borrelia burgdorferi B31 plasmid l... 37 4.6
AB084781_3(AB084781|pid:none) Mycoplasma mobile genes for P123, ... 37 4.6
AE014187_112(AE014187|pid:none) Plasmodium falciparum 3D7 chromo... 36 6.0
(P36016) RecName: Full=Heat shock protein 70 homolog LHS1; ... 36 6.0
FN357535_26(FN357535|pid:none) Schistosoma mansoni genome sequen... 36 6.0
CP001258_11(CP001258|pid:none) Borrelia burgdorferi 156a plasmid... 36 6.0
AL844509_172(AL844509|pid:none) Plasmodium falciparum 3D7 chromo... 36 6.0
AY652746_14(AY652746|pid:none) Ehrlichia ruminantium strain Gard... 36 6.0
AE014185_210(AE014185|pid:none) Plasmodium falciparum 3D7 chromo... 36 6.0
AE014186_398(AE014186|pid:none) Plasmodium falciparum 3D7 chromo... 36 6.0
AE000782_983(AE000782|pid:none) Archaeoglobus fulgidus DSM 4304,... 36 6.0
CP000234_120(CP000234|pid:none) Lactobacillus salivarius UCC118 ... 36 7.8
CP000976_578(CP000976|pid:none) Borrelia duttonii Ly, complete g... 36 7.8
AE016877_4631(AE016877|pid:none) Bacillus cereus ATCC 14579, com... 36 7.8
AL844507_29(AL844507|pid:none) Plasmodium falciparum 3D7 chromos... 36 7.8
T28160(T28160;S23688) hypothetical protein - malaria parasite (P... 36 7.8
DQ333351_106(DQ333351|pid:none) Choristoneura occidentalis granu... 36 7.8
AE014186_458(AE014186|pid:none) Plasmodium falciparum 3D7 chromo... 36 7.8
CP000049_708(CP000049|pid:none) Borrelia turicatae 91E135, compl... 36 7.8
>AC117070_46(AC117070|pid:none) Dictyostelium discoideum chromosome
2 map 2097701-2233941 strain AX4, complete sequence.
Length = 367
Score = 71.6 bits (174), Expect = 1e-10
Identities = 49/115 (42%), Positives = 68/115 (59%), Gaps = 11/115 (9%)
Frame = +3
Query: 294 NILRFSLDENSSNLISVNNDNNDFQVLPIKPIINSCENN--GDIITVNGLFLKNLQLKYT 467
NI F + ENS+N+IS N DN F +LPIKPIINS + N D I ++GLFLK ++ Y+
Sbjct: 215 NIASFEICENSTNVISFN-DNAHFIILPIKPIINSVKMNEEKDKIVLSGLFLKRIKNHYS 273
Query: 468 FNFQGGHTIDPSN---IISFNSTTLVINSTGFVDN------NFFISLFENKSESY 605
G ++ N I+SFNS+T+V+N T +DN I L + S+SY
Sbjct: 274 VRINSGIPLNIGNIRSIVSFNSSTIVLNRT--IDNGNEVVREVSIYLSNSPSDSY 326
Score = 42.0 bits (97), Expect = 0.11
Identities = 26/63 (41%), Positives = 35/63 (55%), Gaps = 2/63 (3%)
Frame = +3
Query: 1209 EPNIISFNLNTYSTNVFSFNDDYHNETLTNGLNFRPIIYSYSI--ENDIITMEGLFLSKL 1382
+ NI SF + STNV SFND+ H L +PII S + E D I + GLFL ++
Sbjct: 213 DKNIASFEICENSTNVISFNDNAHFIILP----IKPIINSVKMNEEKDKIVLSGLFLKRI 268
Query: 1383 SNY 1391
N+
Sbjct: 269 KNH 271
Lambda K H
0.318 0.134 0.401
Gapped
Lambda K H
0.267 0.0410 0.140
Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Sequences: 3204285
Number of Hits to DB: 3,712,775,684
Number of extensions: 76650200
Number of successful extensions: 195679
Number of sequences better than 10.0: 66
Number of HSP's gapped: 194921
Number of HSP's successfully gapped: 68
Length of query: 844
Length of database: 1,040,966,779
Length adjustment: 137
Effective length of query: 707
Effective length of database: 601,979,734
Effective search space: 425599671938
Effective search space used: 425599671938
Neighboring words threshold: 12
Window for multiple hits: 40
X1: 16 ( 7.3 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 41 (21.7 bits)
S2: 32 (16.9 bits)
Dictyostelium discoideum cDNA Project Home