Dictyostelium discoideum cDNA Contig-U11111-1

Assembled

Chromosomal Location of Contig-U11111-1

Sequence Contig-U11111-1

GAAATACAGA AACTTTTGAA CTTGGTAGGT TTGGTTTTGA TAATTTTGCA
CTAAAATTAA CATATAAGAA TCCTACCTCC GGCGTTTGTT ATAATGGTAA
TAATGAAGAT TACAGGAGTG GTACCACAAG AAATTATTAT TTCCAATGTG
ATGAAAATCA AGAATTTAAT TTTACTCCAC CATCAACCAA ATATTCTGAT
GATTGTAATG TAGATGTTTA TATTAAAACA AAATATGTAT GTCCATATAA
AAATATCAAA ATAACACCAA TTAAATATTC ATTAATTCAA CCAAATATTT
TACGTTTTTC ATTGGATGAA AATTCTTCAA ATTTAATTTC AGTGAATAAT
GATAATAATG ATTTTCAAGT TTTACCAATA AAGCCAATAA TCAATAGTTG
TGAAAATAAT GGTGATATAA TTACAGTAAA TGGTTTATTT TTAAAAAATT
TACAATTAAA ATATACATTT AATTTCCAAG GTGGACATAC AATAGACCCG
TCAAATATAA TATCATTCAA TTCAACTACA TTGGTAATAA ACTCTACAGG
CTTTGTTGAT AATAACTTTT TTATTTCTCT CTTTGAAAAT AAATCTGAAA
GCTATCCAAT TTTAAAACCA CAACAACAAA TGGAATTACG TTCATTTATT
AATTATTATT TATACATTGA TTGTATAAAT TGTGATGGTG CAAATTTAAT
GGGTTTATCA AAAAATTATA CAAAAAATAG AGGAGAAGCA GTTAAAGTAG
ACATATATGA TATCACTTTG AATGATAATG GTGGAATATA TTTCGAGGCT
CCAATTTATC CATTTAAAAG ATCTGGTGCC TTACAATTAC CAACTGATTT
TCGTAAAATT AGTGACAATG AAATATTTCA ATTTAATGGT AGTTCAATAG
TATCAATAAG TGGCCTTTTC ATTCCAAAAG TTTATGATAA TCAAGCATAT
ATTATAGGAA AATTAGAATT TTCAAATGGC ACAATTTATA ACTTGGATTA
TAATACCTTT GAATAATAAT TTATTATCA- ---------C ACTGTTGGCC
TACTGGTTAA TTATCAACCA CCATTAAAAT GGATATCATC ATTCACTCAA
AATCAAGAAA AAGTACAATT ACATCTTTCA TTCCCATTTT CTTTATTTCC
AATAACAAGT ATTAAATATA ATGATAAAAA TGGAAAAGAT TTAGACTATA
CTTTAATTGA ACCAAATATC ATTTCATTCA ATTTAAATAC ATATTCTACA
AATGTGTTTT CATTTAATGA TGATTATCAT AATGAAACTT TAACAAATGG
ATTAAACTTC CGTCCAATTA TTTATAGTTA TTCAATTGAA AATGATATAA
TAACAATGGA GGGTCTCTTT TTATCAAAAT TGTCAAATTA TAATTTTTAT
CTTGATGATA TTAAAAATGC TGTTTCTTAT GATCAAGTAA CCTATTTCGA
TATTTCAAGA TTAAGTTTAA TTATGAATCA GGCTTCACAT GTATATGTTT
ATAGTGATGA AAATTCGTTT ACTAAGGTAC CAGATATAAC TATTACAAGC
GAGCAAGACC AATTATTATT TACATGTAGT AGTTGTTTAG GTGGATATAT
CAATATAGAC AATCCACAAA GTAATCAAGA TTCTCAATTC TCTCAAATTG
GTACAATTGT AAAACAATTT AATACAAAAA CAATTTTTAA TAAGTACAAT
ATTTTTACAT TTACTAAAGA TTCAAAAACA ATAGTTATAC AACCACCATT
ACCTACAAAT TTAATAGTTC ATGAATATTC AGCTCAATTT TCAACTTTCA
GTAATAATAC TATTATAGTT AGTGGTGATT TCTTGATGGA TAGTTACAAT
GGTTTTGATT ATATCGATTT CCAATTTCAA TTTGACAATG GTACAATTCA
TTCAGCAAAA AAACAACTTT TATCAAAATC TGATCAAAAC TATAAATATC
AAATAAATGC ACCATTTGCA TATGGTTCTG GTAATTTTAG TGCATCTGTT
ACTTTTGAAA ATATTAAAAA GACAATAACA AATTCATTCC CATTCTATTA
TCCAACAAAA CCAATAGTCA CTTCAATATC AACAATCAAT GATCTAGGTC
TTACAATAAG TGGTGATGGT TTCTTTGGTG TAAAAATATT TGGCTCTTTT
AAAACAATTA CTCTAATTGA AGAAACTGGT CTTTTTTCAG TTCCTACCGA
ATGTGAATAC ACTCATGACC AAGTTACAAA TACAAAAATT TATTGTCGTT
TTTATCTATA TTCCCCACAA TATTCTCAAG ATGATCCAAT TACAATTCAA
ATAAGAAACT CTGGTGAATT TGAACCATTA TATACCCAAA CCTTTTTTTA
TGATTCAAAA TTTAATCCAG AAATTTTAAA CAATGATATT AGTTTACATT
CAGTTTTCTC CAAATTACTT GCAACTCTTT TTATTATATT ATCAATATTG
CTTCAATAAA TAAAATATTA ATAAAATTAC CAAATTAACT TTCAATAAAA
AAAAATTGAC ACAAAAAAAA AAAAAAAAAA AAA

Translated Amino Acid Sequence Contig-U11111-1

eiqkllnlvglvliilh*n*hirilppafvimvimkitgvvpqeiiisnvmkiknlillh
hqpnilmivm*mfilkqnmyvhikisk*hqlnih*fnqifyvfhwmkilqi*fq*imiim
ifkfyq*sq*sivvkimvi*lq*mvyf*kiyn*nihliskvdiq*trqi*yhsiqlhw**
tlqalliitflflslkinlkaiqf*nhnnkwnyvhlliiiytliv*ivmvqi*wvyqkii
qkieekqlk*tymisl*mimveyisrlqfihlkdlvpynyqlifvklvtmkyfnlmvvq*
yq*vafsfqkfmiikhil*en*NFQMAQFITWIIIPLNNNLLS---

---TVGLLVNYQPPLKWISSFTQNQEKVQLHLSFPFSLFPITSIKYNDKNGKDLDYTLIE
PNIISFNLNTYSTNVFSFNDDYHNETLTNGLNFRPIIYSYSIENDIITMEGLFLSKLSNY
NFYLDDIKNAVSYDQVTYFDISRLSLIMNQASHVYVYSDENSFTKVPDITITSEQDQLLF
TCSSCLGGYINIDNPQSNQDSQFSQIGTIVKQFNTKTIFNKYNIFTFTKDSKTIVIQPPL
PTNLIVHEYSAQFSTFSNNTIIVSGDFLMDSYNGFDYIDFQFQFDNGTIHSAKKQLLSKS
DQNYKYQINAPFAYGSGNFSASVTFENIKKTITNSFPFYYPTKPIVTSISTINDLGLTIS
GDGFFGVKIFGSFKTITLIEETGLFSVPTECEYTHDQVTNTKIYCRFYLYSPQYSQDDPI
TIQIRNSGEFEPLYTQTFFYDSKFNPEILNNDISLHSVFSKLLATLFIILSILLQ*iky*
*nyqinfq*kkidtkkkkkk

Homology Contig-U11111-1 vs CSM-Contig

Sequences producing significant alignments:                        (bits)  Value


Contig-U11111-1 (Contig-U11111-1Q) /CSM_Contig/Conti...  4805  0.0
Contig-U14296-1 (Contig-U14296-1Q) /CSM_Contig/Conti...    42  0.003
Contig-U12923-1 (Contig-U12923-1Q) /CSM_Contig/Conti...    42  0.003
Contig-U12510-1 (Contig-U12510-1Q) /CSM_Contig/Conti...    42  0.003
Contig-U13863-1 (Contig-U13863-1Q) /CSM_Contig/Conti...    40  0.012
Contig-U13238-1 (Contig-U13238-1Q) /CSM_Contig/Conti...    40  0.012
Contig-U12837-1 (Contig-U12837-1Q) /CSM_Contig/Conti...    40  0.012
Contig-U12780-1 (Contig-U12780-1Q) /CSM_Contig/Conti...    40  0.012
Contig-U12630-1 (Contig-U12630-1Q) /CSM_Contig/Conti...    40  0.012
Contig-U11394-1 (Contig-U11394-1Q) /CSM_Contig/Conti...    40  0.012

Homology Contig-U11111-1 vs DNA

Sequences producing significant alignments:                  (bits) Value  N


(BJ416468) Dictyostelium discoideum cDNA clone:ddv26d14, 5' ...  1336   0.0    1
(BJ419827) Dictyostelium discoideum cDNA clone:ddv37h12, 5' ...  1310   0.0    1
(BJ330379) Dictyostelium discoideum cDNA clone:dda31h11, 5' ...  1261   0.0    1
(BJ338400) Dictyostelium discoideum cDNA clone:dda61j11, 5' ...  1176   0.0    1
(BJ438708) Dictyostelium discoideum cDNA clone:ddv38a11, 3' ...   850   0.0    3
(BJ438576) Dictyostelium discoideum cDNA clone:ddv37h12, 3' ...   850   0.0    3
(BJ406758) Dictyostelium discoideum cDNA clone:dds36h10, 3' ...   850   0.0    3
(BJ406180) Dictyostelium discoideum cDNA clone:dds34m09, 3' ...   850   0.0    3
(BJ405349) Dictyostelium discoideum cDNA clone:dds31l08, 3' ...   850   0.0    3
(BJ385446) Dictyostelium discoideum cDNA clone:ddc55a05, 3' ...   850   0.0    3

Homology Contig-U11111-1 vs Protein

Sequences producing significant alignments:                      (bits) Value


AC117070_46(AC117070|pid:none) Dictyostelium discoideum chromoso...    72   1e-10
AE014186_457(AE014186|pid:none) Plasmodium falciparum 3D7 chromo...    48   0.002
CP001184_592(CP001184|pid:none) Ureaplasma urealyticum serovar 1...    46   0.006
AE014187_310(AE014187|pid:none) Plasmodium falciparum 3D7 chromo...    44   0.029
(Q25802) RecName: Full=DNA-directed RNA polymerase subunit beta'...    44   0.038
AL844502_157(AL844502|pid:none) Plasmodium falciparum 3D7 chromo...    42   0.084
AM285312_30(AM285312|pid:none) Spiroplasma citri GII3-3X chromos...    41   0.19
CP000016_362(CP000016|pid:none) Candidatus Blochmannia pennsylva...    41   0.19
AE014187_662(AE014187|pid:none) Plasmodium falciparum 3D7 chromo...    40   0.32
AL844509_254(AL844509|pid:none) Plasmodium falciparum 3D7 chromo...    40   0.32