Dictyostelium discoideum cDNA Contig-U11110-1

Assembled

Chromosomal Location of Contig-U11110-1

Sequence Contig-U11110-1

ACCAACTTTA AGTAGTCATA TATCAAAATA CTCACCAGCA CAATCACCTC
TTCCATCAAT CAAATCAATC CCACCAATGC CATTGAGTGG TAATAGTTTC
GAGCCACTAT CAATTGGAAA TCAAAGAAAT AGTACTGATA ATTTATACGA
TAACAGTAAT AATAAAAACA ATAATAACAA CTACAACAAC AACAATAATA
TGTTAAAAAA TTTAGATTTT AATAGTAACG ATCACTCTAA ATTGGATAAT
ATTTTATTAA GCGAAAAATC AATCGAAAGA CACAGAAATC CATTATCATC
TTCTATTTCA TCAGCACCAA AACCATTGGA TTTTGATAGT GATGAAGATA
TAACAGAAGA ATATTATAAA AAAATGTTAG CTAATCATGC AAGATCAAAG
AAATCTAAAA AAGAAACTGA TAAAATATTT AGAGAATTGG AACTATCTGA
TGATGATGTT TTTGATGAAA AGAATGATAG AAAACAATTA AAAATGATGA
AAAGGTTAAT GGATAGAGAG GATAATGATA GAAGAGTAAA AAAGAAAATG
GTTGATCCAA AATATAATAG TAGTAGTAGT AGATCAAAAG ATAGATATGG
AAGTAGTAGT AGTAGTAAAT CATCAAAATA TAATTCATCC TCATCATCAT
CATCTTCAAG ATCAAAAGAT AATAAGTATA TAAGACCATC AATTTTCTCA
AGTGATGATG ATTTTTCAAA GGATGAAGAT GATGAAGAAT TTGAAAGACT
ATGGAAAGAT AGAAAGAAAA AGAAATCAAG TAATGGACCA AGTTTGTCAA
ATTCATATTC TGGTATTAAA ACAGATCAAT ATAATCAACA ACAACAATAT
AATCAACAAC AACAACAATA TCAATCACAA AATCAACAAC AACACCAACA
ACAACAACAA CAAATTATTA CAAATCAATC AATTTTAGAA AAACTTGATT
GGTATAAAGA AATTGATTCA AAATTTTCAT CAAATTGGAT GAAAATTATA
AAAAAAGATT TACCAAAAGC TTGTAAAAAG TATTCAGATA TTCATATGAA
TGGTATTGCC AATTGTAAAA AAATAGCTCA AATGATGAAA CGAGAATTAA
AGATAAAGAA CCAAAAGCCA CCAAAAGCAA CCAAAGATAA TCAAATACGT
GCAAAGAAAT TGGTAAAGGA AATGGGTGCC TATTGGAGAA AGTTTGATAA
AGATGAGAGA GAAGCTAAAA GAAGAGCAGA GAAAGAGGAA GCAAATCAAA
GAAAACGTGA AGAAGAAGTA CAAGAAGCAA AGAGACAACA AAGAAAACTT
AATTTCCTTA TCTCACAAAC TGAACTCTAT AGCCATTTCA TGAGTAAAAA
ATTGGATGAT CCATCAAGTG GCGATGCCAC TCCCGCTACT ATTGGTTCAT
TAATGAATGG ATCACAAATG CCAACTGAAC AGAATAAAAA AATCAAAGAA
AAGAATGATC AAGACGACAA TGAATCATCA TCTGAGGAAG AAGAGGAATC
ATCTGATGAT GAGGGTAAAA CTGAACAAGA AAAGAAAGAA GAAGAGGAAT
TAAAATCTGA AGCACTCAAA AAGACTCAAA AAGCAATTGA ATTACAACTT
TTAAAGACTA AAACCTTTGA CAGAGATGTA AATAAAATTA AAAACTCTGC
AACTGAAGGA GGCGGTGAAA CTATACCAGA ATCATTGGCT GTAAGTGATA
AAATGATGGT AGATGGTTTA CCAATGATTG ATATGAATTC AAGTATTCCA
CCTGGATTTA GTACAGCTGA TACATTGAAA CAACCAACCA TTTTAAATGC
AGATTTAAAA CCATATCAAT TAAAAGGTAT GACATGGATC GTAAATCTTT
ATGATCAAGG TATCAATGGT ATATTGGCAG ATGAAATGGG TTTGGGTAAA
ACCATTCAAT CGATTGCAGT CCTAGCTCAT TTGGCAGAGG AAAAGAATAT
TTGGGGACCA TTTTTAATTG TTACACCAAA ATCAACACTT CACAATTGGA
AGAATGAATT TGCAAAGTTT GTACCAGCAT TCAAGGTAAT TCCTTATTGG
GGTACACAAC AACAACGTAC TACCATTAGA AAATATTGGA ATCCAAAGAA
ATTGTATCAT AGAAATTCAC CATTCCACGT TTTAATCACA TCGTACAATG
TGATAGTACG TGATGAAAAG TATTTCCATA GATTACGTTG GCAATATATG
GTATTGGATG AAGCTCATGC TATCAAGAGT TCAGCAAGTA ATCGTTGGAA
AACTCTAATG AGTTTTAATT GTAGAAATAG ACTCTTACTC ACTGGTACAC
CCATTCAAAA TAGTATGGCT GAACTTTGGG CTTTACTTCA TTTCATTATG
CCAACATTCT TTGATTCTCA TGATGAATTT GCAGAGTGGT TCTCAAAGGA
TATCGAAAAT CATGCTATGT CACAAGGTGG TTTGAATGAA CATCAACTCA
ATCGTCTTCA TATGATTTTG AAACCATTCA TGTTGAGAAG AATTAAAAGA
GATGTAGAGA ATGAAATGCC ATCAAAAACA GAGGTTGAAG TCTATTGTAA
CCTTACTCAT CGTCAAAAGA AACTCTATCA AAGTATTCGT TCAAATATTT
CAATCACCGA GTTATTGGGT GGTGCTTCCT TTAGTGAACA AGGTTCAATG
AAAGCATTGA TGAATTTCGT TATGCAATTT AGAAAGGTTT GTAATCATCC
TGAAACCTTT AAAAGAAGTG AATGCGAATC ACCTTTCCTC TTTCAAGTTC
AAACTATGGA ACCTCAAAAT ACTACTTCAC CACAATGTCC AAATCATTTA
AAAACTGTAA GATCAATTAA TAATAATCCA ATTCAAGTCG TAATTCCAAA
GTTAATCTTT AGAGAAGCTT GGAATCCTT- ---------C AAAAGTTACA
GCTGCACCAA TTGATGCTAT GATATCGGAT AAATCTTTCT ATATTGAAAA
ATCAACTCAA CAATTGAATT CTTCAATGGA TTGTAAAGAG ATTTCATTGG
TTAAATTAAC AATGAATGGT TTAATTACTA ATGAAACTAC CAAGGAATTA
AGTGAATCAT TACCAACTGT TTTACCTCCT TCATCAAATC AAATCGTATT
GGATAATCTA AAAGAGAATG GTGGTTTAAT GGGTGGTTTA AATCGTTTAT
TCGGTTCAAC TTCAATTTGG ATGCCTTCAT TCTCAAAATC TTTGAATGAT
AGTGGTAAAC TTCAAGTATT GGATAAGCTT TTAAAGGATT TGAAAGTTGG
TGGTCATAGA GTACTTATCT ATTCTCAATT CACAAAGATG ATCAACATTT
TAGAAGATTT CATGATCTTT AGAAAATATA AATACCTTCG TCTTGATGGT
TCTTCAAAAT TGGATGATCG TAGAGATATG GTAGATGATT TCCAATCGGA
TCCTTCCATT TTCGCCTTCC TCCTATCAAC TAGAGCTTGT GGTATCGGTA
TCAATTTAAC ATCTGCTGAT ACCGTTATCT TTTACGATAG TGATTGGAAT
CCAACTGTTG ACGAACAAGC CCAAGATAGA GCTCATAGAC TTGGTCAAAC
TAGACCTGTC ACTGTTTATA GATTAATTAC AAAAAATACC ATTGAAGAAA
AGATTTTAAA ACGTGCAAAA CAAAAACATC AAATTCAAAG TATTGTTATT
GCTGGTGGTA AATTTGAATC AAATCCTGAA GAATTAGATC AAGTTGGTGA
AAATGAAGCA ATTTCTTTCT TATTAGATGA TGATGAATTA GAAGAAAGAT
TTAAAAATCA AATTGATCCA GCAACAGGTA AAAAAAGAAA ACAACCAGAA
CCTGAAGTAC CATCAATTGC TGATAAACCA TTTTCACCAA ATGATATCCC
AACAACCAAA CCAGTTAATA AAGGTAGACC ACCAAAAGAA CAATCAAAAG
AACCAAAAGT ACCAAAGAAG AAAGGTCCAA AACCAGGTTA TAAGAGAATA
AAAACAGAAG CAGGTGGTGG TGGTGGTGGT GATGGTGGTG GTGATACTTC
AACTGCCTCA ACTACAACAA CTGCAACTAC AACCTCTTCA ACTACATCTT
CAACTAATGA TCCATCTTCA ACTTCAACTT CACCAACAAC ATCACCACCA
CCAAACAGGT GTTAAACCAA CAAAAGCAGC TAAAGTTCCT GGAAAACCTG
GTAGACCATC AGGAAAACCA AAAGGTTATT ATAAAAAAGC TCCTGCAACT
CCAACACCTT CAAATACAAC TTTATCAACA CCTTCCACCT CACCAACAAT
GGTAACAACT GCACCAATTG GTAGTGCAAA TAC

Translated Amino Acid Sequence Contig-U11110-1

PTLSSHISKYSPAQSPLPSIKSIPPMPLSGNSFEPLSIGNQRNSTDNLYDNSNNKNNNNN
YNNNNNMLKNLDFNSNDHSKLDNILLSEKSIERHRNPLSSSISSAPKPLDFDSDEDITEE
YYKKMLANHARSKKSKKETDKIFRELELSDDDVFDEKNDRKQLKMMKRLMDREDNDRRVK
KKMVDPKYNSSSSRSKDRYGSSSSSKSSKYNSSSSSSSSRSKDNKYIRPSIFSSDDDFSK
DEDDEEFERLWKDRKKKKSSNGPSLSNSYSGIKTDQYNQQQQYNQQQQQYQSQNQQQHQQ
QQQQIITNQSILEKLDWYKEIDSKFSSNWMKIIKKDLPKACKKYSDIHMNGIANCKKIAQ
MMKRELKIKNQKPPKATKDNQIRAKKLVKEMGAYWRKFDKDEREAKRRAEKEEANQRKRE
EEVQEAKRQQRKLNFLISQTELYSHFMSKKLDDPSSGDATPATIGSLMNGSQMPTEQNKK
IKEKNDQDDNESSSEEEEESSDDEGKTEQEKKEEEELKSEALKKTQKAIELQLLKTKTFD
RDVNKIKNSATEGGGETIPESLAVSDKMMVDGLPMIDMNSSIPPGFSTADTLKQPTILNA
DLKPYQLKGMTWIVNLYDQGINGILADEMGLGKTIQSIAVLAHLAEEKNIWGPFLIVTPK
STLHNWKNEFAKFVPAFKVIPYWGTQQQRTTIRKYWNPKKLYHRNSPFHVLITSYNVIVR
DEKYFHRLRWQYMVLDEAHAIKSSASNRWKTLMSFNCRNRLLLTGTPIQNSMAELWALLH
FIMPTFFDSHDEFAEWFSKDIENHAMSQGGLNEHQLNRLHMILKPFMLRRIKRDVENEMP
SKTEVEVYCNLTHRQKKLYQSIRSNISITELLGGASFSEQGSMKALMNFVMQFRKVCNHP
ETFKRSECESPFLFQVQTMEPQNTTSPQCPNHLKTVRSINNNPIQVVIPKLIFREAWNP-
--

---KVTAAPIDAMISDKSFYIEKSTQQLNSSMDCKEISLVKLTMNGLITNETTKELSESL
PTVLPPSSNQIVLDNLKENGGLMGGLNRLFGSTSIWMPSFSKSLNDSGKLQVLDKLLKDL
KVGGHRVLIYSQFTKMINILEDFMIFRKYKYLRLDGSSKLDDRRDMVDDFQSDPSIFAFL
LSTRACGIGINLTSADTVIFYDSDWNPTVDEQAQDRAHRLGQTRPVTVYRLITKNTIEEK
ILKRAKQKHQIQSIVIAGGKFESNPEELDQVGENEAISFLLDDDELEERFKNQIDPATGK
KRKQPEPEVPSIADKPFSPNDIPTTKPVNKGRPPKEQSKEPKVPKKKGPKPGYKRIKTEA
GGGGGGDGGGDTSTASTTTTATTTSSTTSSTNDPSSTSTSPTTSPPPNRC*tnkss*ssw
ktw*tirktkrll*ksscnsntfkynfintfhltnngnnctnw*cky

Homology Contig-U11110-1 vs CSM-Contig

Sequences producing significant alignments:                        (bits)  Value


Contig-U11110-1 (Contig-U11110-1Q) /CSM_Contig/Conti...  5148  0.0
Contig-U10818-1 (Contig-U10818-1Q) /CSM_Contig/Conti...    66  3e-10
Contig-U12155-1 (Contig-U12155-1Q) /CSM_Contig/Conti...    46  3e-04
Contig-U11209-1 (Contig-U11209-1Q) /CSM_Contig/Conti...    46  3e-04
Contig-U12466-1 (Contig-U12466-1Q) /CSM_Contig/Conti...    44  0.001
Contig-U11786-1 (Contig-U11786-1Q) /CSM_Contig/Conti...    44  0.001
Contig-U09128-1 (Contig-U09128-1Q) /CSM_Contig/Conti...    44  0.001
Contig-U05048-1 (Contig-U05048-1Q) /CSM_Contig/Conti...    44  0.001
Contig-U13138-1 (Contig-U13138-1Q) /CSM_Contig/Conti...    42  0.005
Contig-U11869-1 (Contig-U11869-1Q) /CSM_Contig/Conti...    42  0.005

Homology Contig-U11110-1 vs DNA

Sequences producing significant alignments:                  (bits) Value  N


(BJ391099) Dictyostelium discoideum cDNA clone:dds15g01, 5' ...  1227   0.0    1
(BJ363989) Dictyostelium discoideum cDNA clone:ddc29m08, 5' ...  1221   0.0    1
(BJ370990) Dictyostelium discoideum cDNA clone:ddc56a09, 5' ...  1201   0.0    1
(BJ366322) Dictyostelium discoideum cDNA clone:ddc38g16, 5' ...  1191   0.0    1
(BJ391720) Dictyostelium discoideum cDNA clone:dds24n24, 5' ...  1178   0.0    1
(BJ334055) Dictyostelium discoideum cDNA clone:dda44p21, 5' ...  1170   0.0    1
(BJ330718) Dictyostelium discoideum cDNA clone:dda32c13, 5' ...  1168   0.0    1
(BJ419452) Dictyostelium discoideum cDNA clone:ddv36l04, 5' ...  1152   0.0    1
(BJ333107) Dictyostelium discoideum cDNA clone:dda41a14, 5' ...  1150   0.0    1
(BJ368998) Dictyostelium discoideum cDNA clone:ddc48j24, 5' ...  1142   0.0    1

Homology Contig-U11110-1 vs Protein

Sequences producing significant alignments:                      (bits) Value


AL844862_2(AL844862|pid:none) Mouse DNA sequence from clone RP23...   537   e-150
AB033085_1(AB033085|pid:none) Homo sapiens mRNA for KIAA1259 pro...   535   e-150
(Q9ULG1) RecName: Full=Putative DNA helicase INO80 complex homol...   535   e-150
(Q4PGL2) RecName: Full=Putative DNA helicase INO80;          EC=...   535   e-150
AL929049_3(AL929049|pid:none) Zebrafish DNA sequence from clone ...   530   e-148
AL137080_15(AL137080|pid:none) Arabidopsis thaliana DNA chromoso...   514   e-143
(Q8RXS6) RecName: Full=DNA helicase INO80 complex homolog 1;    ...   514   e-143
AY069786_1(AY069786|pid:none) Drosophila melanogaster SD02886 fu...   512   e-143
(Q9VDY1) RecName: Full=Putative DNA helicase Ino80;          Sho...   512   e-143
FM992695_429(FM992695|pid:none) Candida dubliniensis CD36 chromo...   502   e-140