Dictyostelium discoideum cDNA Contig-U10976-1

Assembled

Chromosomal Location of Contig-U10976-1

Sequence Contig-U10976-1

ACTGTTGGCC TACTGGNAAA AAAAAATAAA TAAATAAAAA AAATGGAACA
TTCAACTCCA CTAAATGAAG AAATTGTACA TAAAAAGAAT GATGAAAATT
GGGTAATTGC ACAAAAAAAA GTATTTACAA ATTGGTGTAA TATTTTTTTA
AATCAACGTT CTCAAAAGAT TGAAGATTTG GAAACAGATC TTTATGATGG
AATTTTGTTG GGTTCTCTAT TGGAGATATT AAGTGGAAAG AATGTAATTC
TTTCAAAATG TAAACAATTG AAAACTAGAC TTCACTATAT CAACAATTTG
AATTTCTCTC TAAAGTTTAT AGGTGATGAA GGATTACGTT TAGTTGGTGT
GGCATCTGAA GATATCACTG ACGGGAATTT GAAATTAATC TTGGGTTTAG
TTTGGACTTT AATTTTACGT TATCAAATTC AATCTATGCA AAATTCAAAA
TCAAGTCAAC AAAATCTTCA TTCCTCAACT AAACCATCTG AATTAATGTT
AAATTGGGTA AAATCTCAAA TTTCTGATTA TGGTCATCAT ATTAAAGATT
TAACAACAAG TTTCCAAAAC GGTTTATTAT TTT------- ---GATCATC
AAGATCAATA TCACCAATTT CATCACCAAT TAAAAATAGT ACTACTGGCA
ATAGTAATTT ATCAAAATCA ACATCTTTTG AAAAGATAGA AGCTAGTAAT
ACTACTAATA ATAATACTAT TATTATTGCA GAAGAGAGTA GAGTTATTGA
AAAAATAGTC GAAAAGATAA TTGAAGTTGA AAAGATAGTA GAAGTTGAAA
AGATAGTAGA AGTTGAAAAG ATAGTAGAAG TTGAAAAGAT AGTAGAAGTT
GAAAAGATTG TTAAAGTTGA TGATATCGAA AAGCTAACAA ATTTACAAGA
TCAATTAACT GAACAACAAC AACAATATCA AGAGAAATCA TTGAAATTGG
TAAACTTGGA ATTGGAATTA CAAGAAAAGA GTAATCAACT TGTTGATAAA
TCTAATCAAC TTTCAACAAT GCAAGCAACC AATTCAGAGT TAATGGAAAA
GATTGGCGGA TTAATGAATG ATCTAACCGA TATTCCAACT CAAGATATTA
AAGAGAAAGA TGAGATAATT GCAAATCTAA AGATTGAGAG TGAAAAGAAT
TTAAAATGCT TTCAAGATGA TTTCAATGCT TTACAATCTC GATACAGTCT
TACCATTGAG CAAACTAGTC AATTGCAAGA TAGAATTAAG CAATTAATAA
ATGAATTACA AGAGAGGGAT GATAAATTCA TTGAGTTTAC AAACTCATCA
AATCAATCAT TGGCTGATAA CCAACGTGTA ATCGACCAAT TAACCAATGA
GAAACAATCA ATAACTCTAC AATTACAAGA TCAACAAGAT ATAAAAGAAA
AGGAATTTCA ATTTGAAAAA CAACAATTAT TAAGTCAAAT TGATTCAATC
ACAACAAACA TTCAAGAATA TCAAGATAAA TTCAATAATT TACAACAAGA
ATTCAATACT CAACAAACTT TAAATCAACA AGAAACTCAT AGATTAACTC
AACAATTATA TCAAATAAAT ACAGATTATA ATGAAAAACA AACTCAATTA
CAATCGGAAA TTAAAGATAA TCAAACTATA AATGAACAAT TAAATAAACA
ATTATCAGAA AAAGATAAAG AAATTGAAAA ACTTTCAAAT CAACAAGAAC
AACAACAAGA TGAAAAAATT AATAATCTTT TATTAGAAAT TAAAGAAAAA
GATTGTTTAA TTGAAAGAAT TAATCAACAA CTTTTAGAAA ATATTGATTT
AAATTCAAAA TATCAACAAT TACTTTTAGA ATTTGAAAAT TTTAAATTAA
ATTCATCAAA AGAAAAAGAA AATCAATTAA ATGAATTACA AAGTAAACAA
GATGAAAGAT TTAATCAATT AAATGATGAA AAACTTGAAA AAGAAAAACA
ATTACAATCA ATTGAAGATG AATTCAATCA ATATAAACAA CAACAATTAA
GCTCAAATTC AAATATTGAT CAACAATTAC AATCTACTAT TATTGAATTA
TCAGAATTAA AAGAACAAAA AGAATTAAAT GATTCAAAAT TAATTGAAAA
AGAAAAACAA TTACAACAAT TACAACAAGA ATTTGACCAA CTAAATGAAA
AAAATCAAAA AGATCACCAA GATCAATTAG AATTACTTGA AAAACAATTA
AAACAATTAC AACAAGAATA TGATCAATTA AATGAAACTA ATCAATCAAT
TGAAAATCAA TTAAATCAAC AAAATTTAAT TAATAAAGAG AATTTAAATG
AAAAAGAGCA AGAATTACTA AAATTACAAA ATCAATTAAA TCAACAAATT
GAAAAGATTC AATTTGATCA ACAAGAATTT TCAAAACAAA ATTCAATTAA
TATTGAATTA GTAAATGAAG AAAATGAAAA ATTAATTCAA TTACAACAAG
ATTATGATCA ATTAAAACAA CAAAATAGAT CAAATGATGA AAAAGATGAA
AATGATTTAA TTGAAAAAGA AAATCAACTA AAGTCAATTC AAAATGAATT
AAATCAATTA ATTGAAAAGA ATGAATCTGA TCATAAAGAC CAACCAATTA
AAACAACCAA TCAATTGAAA ATGATTTAAT TGAAAAAGAG AATCAAATTC
AACAATTACA ATCACAATTA AATGAACAAA GACAACAACA ATCAAATCAG
TTATCTGAGA AAGATCAACA ATTGAATCAG TTAATTGAAA AGAATCAATT
TGATCAAAAA GAACAACAAT TAAAACAACA ATCAATTGAA AATGATTTGT
TTGAAAAAGA GAATCAAATT CAACAATTGC AATCACAATT AAATGAACAA
AGACAACAAC AATCAAATCA GTTGTCTGAA AAAGATCAAC AATTGAATCA
ATTAATTGAA AAGAATGAAT CTGATCAAAA AGAACAACAA TTAAAACAAC
AATCAATTGA AAATGATTTA ATTGAAAAAG AGAATCAAAT TCAACAATTA
CAATTACAAT TAAATGAACA AAGACAACTA CAATCTGAAG TATCAATTGA
TAATGATAAA ATTTTAGAAT TAGAAAAACA ATTAAAACAA TGTCAATCGG
ATTTATTGAA ATTAAATGAT GAAAAACAAC AACAAGATAA ACAATTACAA
GATAAACAAA TTGAATTTGA TCAATTACAA TTAACTTTTA ATCAATTTAA
AAATGATAAA GATTCACAAT TCATTCAATT ACAAGATGAT CAAAAACAAC
AATTACAATC AATCCAACAA GATTTAAATC AATTAAAACA AGAAAATCAA
GAAAAAGAAA AACAACTCTC TGAAAAGGAT GAAAAATTAC AATCAATTCA
ATTTGAGAAT CAAGAAAAAG AAAAACAACT CTCTGAAAAG GATGAAAAGT
TACAATCAAT TCAACAAAAT TTAAATCAAT TAAATGATGA AAATCAAGAA
AAAGTAAAAC AATTTTCTGA AAAAGACGAA AAGCTACAAT CAATTCAACA
AGATTTAAAT CAATTAAAAC AAGAAAATCA AGAAAAAGAA AAACAACTCT
CTGAAAAGGA TGAAAAGTTA CAATCAATTC AACAAGATTT AAATCAATTA
AATGATGATC AAATTAAAAA AAATGAAAAA TTAAAAGAAA AAGAAGAACA
ATTATTAAAA TTACAACAAG ACTTTAATGA TCAACAATCT CAACAATTAA
AACAATTGGA AGAGAAATTA TCTGAAAAAG AAAATCAATT ACAACAATTA
AAACAAGAGA ATGAAATCAA TCAATTGAAT CAACAACAAC AATCAAATGA
AATTATTCAA CAATTAAAAG ATCAACTTTT AAAACAACAA CAACAAGAAC
AACAAGAAAA TAATAATGAA AAAGAAATTG AAAGATTAAT ACAAGAGATT
GAACAATTGA AACAACAACA AGAGATTGAC CAATCGGAAC TTAGTAATAA
AGAGATTAAA ATCCNAACTA CTCAACAAGA ATTTGATCAA CTNTNTCATA
ATAGATCAAA GGATCAATTA CATTGTAAAT TCAATCATTT ATAGATTATC
TTTAGATGAT GATAATGATT NTGATTTAAT TGCACAANAA TATGAAAATG
GTAATAGTAC AACATTTGAG AAATCATTAA GAATTTTCCC ATCAAAGAAT
ACACGTCCAA TATTNGATTG GAGAGCATTG TTNTTTATTG GNGCTGCT

Translated Amino Acid Sequence Contig-U10976-1

tvgllxkknk*IKKMEHSTPLNEEIVHKKNDENWVIAQKKVFTNWCNIFLNQRSQKIEDL
ETDLYDGILLGSLLEILSGKNVILSKCKQLKTRLHYINNLNFSLKFIGDEGLRLVGVASE
DITDGNLKLILGLVWTLILRYQIQSMQNSKSSQQNLHSSTKPSELMLNWVKSQISDYGHH
IKDLTTSFQNGLLF---

---SSRSISPISSPIKNSTTGNSNLSKSTSFEKIEASNTTNNNTIIIAEESRVIEKIVEK
IIEVEKIVEVEKIVEVEKIVEVEKIVEVEKIVKVDDIEKLTNLQDQLTEQQQQYQEKSLK
LVNLELELQEKSNQLVDKSNQLSTMQATNSELMEKIGGLMNDLTDIPTQDIKEKDEIIAN
LKIESEKNLKCFQDDFNALQSRYSLTIEQTSQLQDRIKQLINELQERDDKFIEFTNSSNQ
SLADNQRVIDQLTNEKQSITLQLQDQQDIKEKEFQFEKQQLLSQIDSITTNIQEYQDKFN
NLQQEFNTQQTLNQQETHRLTQQLYQINTDYNEKQTQLQSEIKDNQTINEQLNKQLSEKD
KEIEKLSNQQEQQQDEKINNLLLEIKEKDCLIERINQQLLENIDLNSKYQQLLLEFENFK
LNSSKEKENQLNELQSKQDERFNQLNDEKLEKEKQLQSIEDEFNQYKQQQLSSNSNIDQQ
LQSTIIELSELKEQKELNDSKLIEKEKQLQQLQQEFDQLNEKNQKDHQDQLELLEKQLKQ
LQQEYDQLNETNQSIENQLNQQNLINKENLNEKEQELLKLQNQLNQQIEKIQFDQQEFSK
QNSINIELVNEENEKLIQLQQDYDQLKQQNRSNDEKDENDLIEKENQLKSIQNELNQLIE
KNESDHKDQPIKTTNQLKMI*lkkrikfnnynhn*mnkdnnnqisylrkinn*is*lkri
nlikknnn*nnnqlkmiclkkrikfnncnhn*mnkdnnnqisclkkinn*in*lkrmnli
kknnn*nnnqlkmi*lkkrikfnnynyn*mnkdnynlkyqlimikf*n*knn*nnvnriy
*n*mmknnnkinnykinklnlinyn*llinlkmikihnsfnykmiknnnynqsnki*in*
nkkikkkknnslkrmknynqfnlrikkkknnslkrmksynqfnki*in*mmkikkk*nnf
lkktksynqfnki*in*nkkikkkknnslkrmksynqfnki*in*mmiklkkmkn*kkkk
nny*nynktlminnlnn*nnwkrnylkkkinynn*nkrmksin*innnnqmklfnn*kin
f*nnnnknnkkiimkkklkd*ykrlnn*nnnkrltnrnlvikrlksxllnknlinxxiid
qrinyivnsiiyrlsldddndxdliaqxyengnsttfekslrifpskntrpixdwralxf
igaa

Homology Contig-U10976-1 vs CSM-Contig

Sequences producing significant alignments:                        (bits)  Value


Contig-U10976-1 (Contig-U10976-1Q) /CSM_Contig/Conti...  2131  0.0
Contig-U12717-1 (Contig-U12717-1Q) /CSM_Contig/Conti...   331  4e-90
Contig-U14006-1 (Contig-U14006-1Q) /CSM_Contig/Conti...    60  2e-08
Contig-U14865-1 (Contig-U14865-1Q) /CSM_Contig/Conti...    48  8e-05
Contig-U13021-1 (Contig-U13021-1Q) /CSM_Contig/Conti...    48  8e-05
Contig-U12140-1 (Contig-U12140-1Q) /CSM_Contig/Conti...    46  3e-04
Contig-U03197-1 (Contig-U03197-1Q) /CSM_Contig/Conti...    46  3e-04
Contig-U14461-1 (Contig-U14461-1Q) /CSM_Contig/Conti...    44  0.001
Contig-U11132-1 (Contig-U11132-1Q) /CSM_Contig/Conti...    44  0.001
Contig-U10804-1 (Contig-U10804-1Q) /CSM_Contig/Conti...    44  0.001

Homology Contig-U10976-1 vs DNA

Sequences producing significant alignments:                  (bits) Value  N


(AF057019) Dictyostelium discoideum interaptin (abpD) gene, ...  1556   0.0    1
(BJ348991) Dictyostelium discoideum cDNA clone:dda35c05, 3' ...  1110   0.0    1
(BJ379549) Dictyostelium discoideum cDNA clone:ddc35p04, 3' ...  1100   0.0    1
(BJ344632) Dictyostelium discoideum cDNA clone:dda19p23, 3' ...   789   0.0    3
(BJ327307) Dictyostelium discoideum cDNA clone:dda19p23, 5' ...   852   0.0    4
(BJ350803) Dictyostelium discoideum cDNA clone:dda41h01, 3' ...   993   0.0    1
(BJ396952) Dictyostelium discoideum cDNA clone:dds44e17, 5' ...   831   0.0    4
(BJ353097) Dictyostelium discoideum cDNA clone:dda49a04, 3' ...   910   0.0    1
(BJ345523) Dictyostelium discoideum cDNA clone:dda23p20, 3' ...   482   0.0    5
(BJ404344) Dictyostelium discoideum cDNA clone:dds28a09, 3' ...   726   0.0    2

Homology Contig-U10976-1 vs Protein

Sequences producing significant alignments:                      (bits) Value


(O76329) RecName: Full=Interaptin; AltName: Full=Alpha-actinin B...   855   0.0
(Q54G05) RecName: Full=Putative leucine-rich repeat-containing p...   121   2e-25
AM422018_415(AM422018|pid:none) Candidatus Phytoplasma australie...   114   2e-23
AM422018_797(AM422018|pid:none) Candidatus Phytoplasma australie...   112   2e-22
CP001291_4282(CP001291|pid:none) Cyanothece sp. PCC 7424, comple...   110   6e-22
AC116920_30(AC116920|pid:none) Dictyostelium discoideum chromoso...   107   5e-21
AF019980_1(AF019980|pid:none) Dictyostelium discoideum ZipA (zip...   103   5e-20
CU928178_658(CU928178|pid:none) Zygosaccharomyces rouxii strain ...    99   1e-18
AC116957_105(AC116957|pid:none) Dictyostelium discoideum chromos...    98   3e-18
AM999887_162(AM999887|pid:none) Wolbachia endosymbiont of Culex ...    94   4e-17