Dictyostelium discoideum cDNA Contig-U10972-1

Assembled

Chromosomal Location of Contig-U10972-1

Sequence Contig-U10972-1

ATAAATATTT TCAAAATAAC ATCAACAACC AACACTTCAT CATCAAACAC
AAATATTCAA TATTATAATT TTATGGATCC TAGGTTTTTT TTTTCGCAAT
GACAGAAGTT TTAAACAATA AAACTGAAAG TCCAAACATT CAAAACTTTT
CATCTGCAAG TTTGCAAGAT GATAACAACA ATACTGGTTT TGATGATTCA
GATAGAAAGC AAAAAATAGT TTATACATCA GATTTTTTAA AAAAATTTGA
TAAAAACAAA ACAAAAGAAT TTTCACAAAA TATAATGCAA CCACAACAAC
CAATTGGTGC ACCTCATTTA GGTGGTGGTG AATTATTCAA CAACAATATC
GATTTGGAAA ATAACCAAAC ACACGAATAT AGAGGAATTA TCCAAAGATT
AAAATCAATC ATTGTAAATT CAAAAGATGA TAATTTAATG AGTATGATGA
GAATGGTATT CTCTGAATCT AATCTTGGTA AATCATTTTT AGTTGATGAT
TACAATCAAA AAAGAATACC AGATATTGGA GGACCAATTC AAAATTTTGT
TTTTTTAGGA GATGTTGAAC CATCACAAAT GTCACCTACA CCATTAAATT
CATTTTTTTC AACACATGCA GCAAATTCTT CAATTTCAGG ATCACTTCCA
CCATTAAGAT CTCCAAGAAA GGTTGAATCT GTTCCATCAA TTCCAGTTTT
ACCATTATCA TCACAACAAC AAACACAACA ACAACAACAA CCAATTGGAC
ATCCATCATC ATCTTCTACA CCATCCTCAT TAAATTCATC TGGTGGTTCA
ATATCAACTT CATCATCTAC CTCATCACCA GCAACATCTA CTAATACAAC
ACCAAATACA CAAGCCCCAT TCAAATCTCC AAGAAAATTA AATACATCTG
GTAGTGGATT AACTTCAATA ATCCCACCAG GTTTTTCAAA CGAATCTTCA
CCAAATACAT CAAGCAATAT TGTATCTCCA TCAACTACAA CCACCACACC
ATTATCATCA ACTTCACCAT CAACCACAAC CACAACCACT ACACCAACAT
CATTCCAACC AAGTGGAGGT AAAATGAAAA AATCACCATC GATGCCAGTA
ATCGCCGGTA AATTAAATGG CGAATCATTA AAATCACCAA ATAAACCAAA
CCTTGCTAGT AATAATAATA ATAATAATAA CAGCTATAGT AACAGTAATA
TAAGTTTTAG TAACATTAAA CCAAACAATG GTAGTTTAAG TTCATCTGCC
AACTCAATCT CCACTGGATT ACCAAATTTA TCAGGTGGCA AAATTAATAC
CAACGTTTAC TCTTCACTTG GTAACATTGG AAGTGGAATG AATGGTTCTA
GCACAAAGGA TGATTCTGTT TCACCAACAA AGAAATCAAC CGACCATCAA
CCAAGAAAAC CAATGACCAA ATCAGTATCA ATGAGTTCAA TTGGATTGAA
CA-------- --CCAAAGAA GACAAATCGT CGACAAAATC GCTCCAAGTG
TAGAGACCTT TGCCTGTCAT GTCTATGGTA TTCATGGTAT TCAAAAGCTA
CTTCAATACC TCTCACCCGG TCAAGTCGAA TCCATCATTG CCTCCATCAA
GGGTAAGGTA ATACAATTAT CAAAGGATAA CAAGGGTAAC TACTTGATTC
AATCATTTTT GAAACAATTT TCACCAGAGG TCAATCAATT TGTTTGTGAT
GCAATCATGG GTAATATTGA GGAGATTTGT ACCCATAAAG TTGGCTGTAC
AGTCGTCAAT CGTTGTATCG ATAATGCCAA TCCTGAGCAA CTAGAGAAAT
TGGTCGATAA AATCACTGAA CATTCCCTCA AATTGGTACA AGATCAATTT
GGCAACTATG TCGTTCAACA TCTCCTCTCA AAGAATAAAG CTTACTCTTC
AAAATTGATT GTCTCACTCA AAGATAACAT TGCTGAATTA TCCATCCAAA
AGTTTAGCTC CAATGTCATT GAAAAGTGTT TACAATTGGC TGATACTCCA
ACCTATGAAT TGATCATCAA GGCTTTGACA GAAGCTGATA TCCTCAGTTT
GCTTCAAGAT AAATATGCCA ACTTCGTGAT CCAAACCGCT TTGGACGTCA
GTAATGATAC TCAACACGCA AAACTTGTAA AAATTATTGT ACCCTACATT
CATCAAATTA AGACTCCTTA CGTAATTCAT ATTCAAAAGT AAGATACTTC
AAGTTAAAAA AGGATA

Translated Amino Acid Sequence Contig-U10972-1

kyfqnninnqhfiikhkysil*fygs*VFFFAMTEVLNNKTESPNIQNFSSASLQDDNNN
TGFDDSDRKQKIVYTSDFLKKFDKNKTKEFSQNIMQPQQPIGAPHLGGGELFNNNIDLEN
NQTHEYRGIIQRLKSIIVNSKDDNLMSMMRMVFSESNLGKSFLVDDYNQKRIPDIGGPIQ
NFVFLGDVEPSQMSPTPLNSFFSTHAANSSISGSLPPLRSPRKVESVPSIPVLPLSSQQQ
TQQQQQPIGHPSSSSTPSSLNSSGGSISTSSSTSSPATSTNTTPNTQAPFKSPRKLNTSG
SGLTSIIPPGFSNESSPNTSSNIVSPSTTTTTPLSSTSPSTTTTTTTPTSFQPSGGKMKK
SPSMPVIAGKLNGESLKSPNKPNLASNNNNNNNSYSNSNISFSNIKPNNGSLSSSANSIS
TGLPNLSGGKINTNVYSSLGNIGSGMNGSSTKDDSVSPTKKSTDHQPRKPMTKSVSMSSI
GLN---

---QRRQIVDKIAPSVETFACHVYGIHGIQKLLQYLSPGQVESIIASIKGKVIQLSKDNK
GNYLIQSFLKQFSPEVNQFVCDAIMGNIEEICTHKVGCTVVNRCIDNANPEQLEKLVDKI
TEHSLKLVQDQFGNYVVQHLLSKNKAYSSKLIVSLKDNIAELSIQKFSSNVIEKCLQLAD
TPTYELIIKALTEADILSLLQDKYANFVIQTALDVSNDTQHAKLVKIIVPYIHQIKTPYV
IHIQK*dtss*kri

Homology Contig-U10972-1 vs CSM-Contig

Sequences producing significant alignments:                        (bits)  Value


Contig-U10972-1 (Contig-U10972-1Q) /CSM_Contig/Conti...  1994  0.0
Contig-U13852-1 (Contig-U13852-1Q) /CSM_Contig/Conti...    48  4e-05
Contig-U12039-1 (Contig-U12039-1Q) /CSM_Contig/Conti...    42  0.003
Contig-U14601-1 (Contig-U14601-1Q) /CSM_Contig/Conti...    40  0.010
Contig-U12144-1 (Contig-U12144-1Q) /CSM_Contig/Conti...    40  0.010
Contig-U11546-1 (Contig-U11546-1Q) /CSM_Contig/Conti...    40  0.010
Contig-U09796-1 (Contig-U09796-1Q) /CSM_Contig/Conti...    40  0.010
Contig-U02501-1 (Contig-U02501-1Q) /CSM_Contig/Conti...    40  0.010
Contig-U12283-1 (Contig-U12283-1Q) /CSM_Contig/Conti...    38  0.040
Contig-U12168-1 (Contig-U12168-1Q) /CSM_Contig/Conti...    38  0.040

Homology Contig-U10972-1 vs DNA

Sequences producing significant alignments:                  (bits) Value  N


(BJ398609) Dictyostelium discoideum cDNA clone:dds1p02, 3' e...  1229   0.0    2
(BJ403614) Dictyostelium discoideum cDNA clone:dds25o18, 3' ...   920   0.0    3
(BJ364241) Dictyostelium discoideum cDNA clone:ddc31b06, 5' ...   527   0.0    4
(BJ385769) Dictyostelium discoideum cDNA clone:ddc56g04, 3' ...  1055   0.0    1
(BJ344521) Dictyostelium discoideum cDNA clone:dda19j13, 3' ...   793   0.0    3
(BJ366090) Dictyostelium discoideum cDNA clone:ddc37p16, 5' ...   533   0.0    5
(BJ371415) Dictyostelium discoideum cDNA clone:ddc57l21, 5' ...   527   0.0    5
(BJ364497) Dictyostelium discoideum cDNA clone:ddc31o20, 5' ...   527   0.0    4
(BJ327208) Dictyostelium discoideum cDNA clone:dda19j13, 5' ...   533   0.0    3
(BJ363160) Dictyostelium discoideum cDNA clone:ddc25j10, 5' ...   468   0.0    4

Homology Contig-U10972-1 vs Protein

Sequences producing significant alignments:                      (bits) Value


AE017343_431(AE017343|pid:none) Cryptococcus neoformans var. neo...   180   2e-43
(Q92359) RecName: Full=Pumilio domain-containing protein C6G9.14...   176   3e-42
AP007151_730(AP007151|pid:none) Aspergillus oryzae RIB40 genomic...   169   3e-40
EF068153_1(EF068153|pid:none) Hortaea werneckii pumilio-family R...   166   4e-39
CR954215_201(CR954215|pid:none) Ostreococcus tauri strain OTTH05...   164   2e-38
CU638743_632(CU638743|pid:none) Podospora anserina genomic DNA c...   162   4e-38
CR380947_15(CR380947|pid:none) Candida glabrata strain CBS138 ch...   152   5e-35
S57889_1(S57889|pid:none) YGL023=putative regulatory protein [Sa...   152   5e-35
CR382131_428(CR382131|pid:none) Yarrowia lipolytica strain CLIB1...   150   1e-34
AJ851393_1(AJ851393|pid:none) Gallus gallus mRNA for hypothetica...   150   2e-34