Homology Contig-U10972-1 vs DNA
Query= Contig-U10972-1 (Contig-U10972-1Q) /CSM_Contig/Contig-U10972-1Q.Seq.d
(2216 letters)
Database: ddbj_A
108,600,042 sequences; 106,710,029,556 total letters
Searching..................................................done
Score E
Sequences producing significant alignments: (bits) Value N
(BJ398609) Dictyostelium discoideum cDNA clone:dds1p02, 3' e... 1229 0.0 2
(BJ403614) Dictyostelium discoideum cDNA clone:dds25o18, 3' ... 920 0.0 3
(BJ364241) Dictyostelium discoideum cDNA clone:ddc31b06, 5' ... 527 0.0 4
(BJ385769) Dictyostelium discoideum cDNA clone:ddc56g04, 3' ... 1055 0.0 1
(BJ344521) Dictyostelium discoideum cDNA clone:dda19j13, 3' ... 793 0.0 3
(BJ366090) Dictyostelium discoideum cDNA clone:ddc37p16, 5' ... 533 0.0 5
(BJ371415) Dictyostelium discoideum cDNA clone:ddc57l21, 5' ... 527 0.0 5
(BJ364497) Dictyostelium discoideum cDNA clone:ddc31o20, 5' ... 527 0.0 4
(BJ327208) Dictyostelium discoideum cDNA clone:dda19j13, 5' ... 533 0.0 3
(BJ363160) Dictyostelium discoideum cDNA clone:ddc25j10, 5' ... 468 0.0 4
(BJ367329) Dictyostelium discoideum cDNA clone:ddc42d08, 5' ... 480 0.0 3
(BJ387269) Dictyostelium discoideum cDNA clone:dds1p02, 5' e... 533 0.0 3
(BJ373419) Dictyostelium discoideum cDNA clone:ddc3d02, 3' e... 724 0.0 1
(GR575830) CBXW1202.b1 CBXW Dictyostelium purpureum 6 hr veg... 212 e-103 8
(BJ377675) Dictyostelium discoideum cDNA clone:ddc25j10, 3' ... 325 4e-84 1
(BJ359866) Dictyostelium discoideum cDNA clone:ddc3d02, 5' e... 220 3e-83 2
(GR584317) CCAA2338.b1 CCAA Dictyostelium purpureum 0 hr sta... 165 2e-76 6
(GR575831) CBXW1202.g1 CBXW Dictyostelium purpureum 6 hr veg... 155 4e-62 4
(GR583747) CCAA1874.g1 CCAA Dictyostelium purpureum 0 hr sta... 151 5e-61 4
(GR584318) CCAA2338.g1 CCAA Dictyostelium purpureum 0 hr sta... 151 6e-61 4
(GR583746) CCAA1874.b1 CCAA Dictyostelium purpureum 0 hr sta... 58 5e-34 6
(FG287110) 1108770729683 New World Screwworm Egg 9261 ESTs C... 44 3e-05 2
(FG284125) 1108770655953 New World Screwworm Egg 9261 ESTs C... 44 3e-05 2
(FG289874) 1108793310282 New World Screwworm Egg 9261 ESTs C... 44 3e-05 2
(FK683816) CCBP4250.b1 CCBP Cochliobolus heterostrophus, Che... 56 7e-05 2
(ER339451) 1092344333155 Global-Ocean-Sampling_GS-34-01-01-1... 54 0.015 2
(CF820078) EST697460 Coccidioides posadasii saprobic phase c... 46 0.051 2
(GH363148) G896P530RA18.T0 C. immitis RS, 72HR Spherule_NORM... 46 0.054 2
(GH407289) G872P512RI7.T0 C. posadasii Silveira, MYCELIAL_NO... 46 0.055 2
(DB930799) Manihot esculenta mRNA, clone: CAS01_030_N02, 5'end. 52 0.099 1
(EX805073) CAPI432.fwd CAPI Laccaria bicolor Mycelium intera... 44 0.20 2
(CT038174) Sus scrofa genomic clone CH242-6P16, genomic surv... 42 0.60 2
(AC129423) Rattus norvegicus clone CH230-125C18, WORKING DRA... 48 1.5 1
(AC123237) Rattus norvegicus clone CH230-146N10, WORKING DRA... 48 1.5 1
(AC094634) Rattus norvegicus clone CH230-5D18, WORKING DRAFT... 48 1.5 1
(CU914520) Pig DNA sequence *** SEQUENCING IN PROGRESS *** f... 48 1.5 1
(AC201358) Strongylocentrotus purpuratus clone R3-17B17, WOR... 48 1.5 1
(AC181715) Strongylocentrotus purpuratus clone R3-1039I03, W... 48 1.5 1
(AC173557) Strongylocentrotus purpuratus clone R3-1009I15, W... 48 1.5 1
(AC168458) Strongylocentrotus purpuratus clone R3-35J4, WORK... 48 1.5 1
(CC237175) CH261-162L18_Sp6.1 CH261 Gallus gallus genomic cl... 48 1.5 1
(DY570670) AGENCOURT_69792089 NIH_ZGC_27 Danio rerio cDNA cl... 34 2.3 3
(AC217336) Solanum lycopersicum chromosome 12 clone LE_HBa-1... 34 3.1 2
(AC189678) Trichinella spiralis BAC clone TS195-47H12 from c... 38 4.0 5
(ED783213) GM_WBb0163F01.f GM_WBb Glycine max genomic clone ... 32 4.1 2
(AC140684) Rattus norvegicus BAC CH230-451A15 () complete s... 46 6.1 1
(GP148405) Sequence 17868 from patent US 7482117. 46 6.1 1
(GP148213) Sequence 17676 from patent US 7482117. 46 6.1 1
(CU480630) Pig DNA sequence from clone CH242-371M9 on chromo... 46 6.1 1
(AC006581) Homo sapiens 12 BAC RP11-259O18 (Roswell Park Can... 46 6.1 1
(AC144660) Rattus norvegicus clone CH230-11G4, WORKING DRAFT... 46 6.1 1
(AC105564) Rattus norvegicus clone CH230-250G11, *** SEQUENC... 46 6.1 1
(AC192687) Saimiri boliviensis boliviensis clone CH254-453D2... 46 6.1 1
(AC174614) Aotus nancymaae clone CH258-39M21, WORKING DRAFT ... 46 6.1 1
(EK307853) 1095462387057 Global-Ocean-Sampling_GS-31-01-01-1... 46 6.1 1
(EK263710) 1095462199509 Global-Ocean-Sampling_GS-31-01-01-1... 46 6.1 1
(EJ211490) 1092347005758 Global-Ocean-Sampling_GS-27-01-01-1... 46 6.1 1
(DE892866) Macropus eugenii DNA, BAC clone: MEB1-070D04_R, 3... 46 6.1 1
(EB244361) PEG003-C-221828-501 Normalized Pedal-Pleural Gang... 46 6.1 1
(CD558489) AGENCOURT_14477476 NIH_MGC_181 Homo sapiens cDNA ... 46 6.1 1
(CD398919) Gm_ck20311 Soybean induced by Salicylic Acid Glyc... 46 6.1 1
(CD397244) Gm_ck17944 Soybean induced by Salicylic Acid Glyc... 46 6.1 1
(BU765150) sas23e05.y1 Gm-c1080 Glycine max cDNA clone SOYBE... 46 6.1 1
(CP001279) Nautilia profundicola AmH, complete genome. 46 6.1 1
(CP000312) Clostridium perfringens SM101, complete genome. 46 6.1 1
(BA000016) Clostridium perfringens str. 13 DNA, complete gen... 46 6.1 1
(FJ789641) Brassica rapa subsp. pekinensis clone KBrB040E10,... 38 6.4 5
(EA376500) Sequence 25323 from patent US 7314974. 38 6.8 2
(AE014188) Plasmodium falciparum 3D7 chromosome 12, complete... 34 9.1 2
(FI625468) BD_ABa0011M07.f BD_ABa Brachypodium distachyon ge... 32 9.4 3
(CB377363) CmaE1_36_L24_T3 Cowpea weevil larvae Lambda Zap E... 36 9.5 2
(AM445431) Vitis vinifera contig VV78X032017.6, whole genome... 42 9.5 2
>(BJ398609) Dictyostelium discoideum cDNA clone:dds1p02, 3' end,
single read.
Length = 686
Score = 1229 bits (620), Expect(2) = 0.0
Identities = 637/644 (98%)
Strand = Plus / Minus
Query: 1522 tctatggtattcatggtattcaaaagctacttcaatacctctcacccggtcaagtcgaat 1581
|||||||||||||||||||||||||||||||||||||||||||| ||| |||||| ||||
Sbjct: 686 tctatggtattcatggtattcaaaagctacttcaatacctctcanccgatcaagtngaat 627
Query: 1582 ccatcattgcctccatcaagggtaaggtaatacaattatcaaaggataacaagggtaact 1641
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 626 ccatcattgcctccatcaagggtaaggtaatacaattatcaaaggataacaagggtaact 567
Query: 1642 acttgattcaatcatttttgaaacaattttcaccagaggtcaatcaatttgtttgtgatg 1701
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 566 acttgattcaatcatttttgaaacaattttcaccagaggtcaatcaatttgtttgtgatg 507
Query: 1702 caatcatgggtaatattgaggagatttgtacccataaagttggctgtacagtcgtcaatc 1761
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 506 caatcatgggtaatattgaggagatttgtacccataaagttggctgtacagtcgtcaatc 447
Query: 1762 gttgtatcgataatgccaatcctgagcaactagagaaattggtcgataaaatcactgaac 1821
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 446 gttgtatcgataatgccaatcctgagcaactagagaaattggtcgataaaatcactgaac 387
Query: 1822 attccctcaaattggtacaagatcaatttggcaactatgtcgttcaacatctcctctcaa 1881
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 386 attccctcaaattggtacaagatcaatttggcaactatgtcgttcaacatctcctctcaa 327
Query: 1882 agaataaagcttactcttcaaaattgattgtctcactcaaagataacattgctgaattat 1941
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 326 agaataaagcttactcttcaaaattgattgtctcactcaaagataacattgctgaattat 267
Query: 1942 ccatccaaaagtttagctccaatgtcattgaaaagtgtttacaattggctgatactccaa 2001
||||||||||||||||||||||||| | ||||||||||||||||||||||||||||||
Sbjct: 266 ccatccaaaagtttagctccaatgtnaanaaaaagtgtttacaattggctgatactccaa 207
Query: 2002 cctatgaattgatcatcaaggctttgacagaagctgatatcctcagtttgcttcaagata 2061
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 206 cctatgaattgatcatcaaggctttgacagaagctgatatcctcagtttgcttcaagata 147
Query: 2062 aatatgccaacttcgtgatccaaaccgctttggacgtcagtaatgatactcaacacgcaa 2121
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 146 aatatgccaacttcgtgatccaaaccgctttggacgtcagtaatgatactcaacacgcaa 87
Query: 2122 aacttgtaaaaattattgtaccctacattcatcaaattaagact 2165
||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 86 aacttgtaaaaattattgtaccctacattcatcaaattaagact 43
Score = 65.9 bits (33), Expect(2) = 0.0
Identities = 35/36 (97%)
Strand = Plus / Minus
Query: 2170 acgtaattcatattcaaaagtaagatacttcaagtt 2205
||||||||||||||||||||||||||||| ||||||
Sbjct: 37 acgtaattcatattcaaaagtaagatactncaagtt 2
Lambda K H
1.37 0.711 1.31
Matrix: blastn matrix:1 -3
Number of Sequences: 108600042
Number of Hits to DB: 2,529,431,866
Number of extensions: 148576284
Number of successful extensions: 11348818
Number of sequences better than 10.0: 74
Length of query: 2216
Length of database: 106,710,029,556
Length adjustment: 25
Effective length of query: 2191
Effective length of database: 103,995,028,506
Effective search space: 227853107456646
Effective search space used: 227853107456646
X1: 11 (21.8 bits)
S2: 23 (46.1 bits)
Dictyostelium discoideum cDNA Project Home