Homology Contig-U10938-1 vs Protein

Query= Contig-U10938-1 (Contig-U10938-1Q) /CSM_Contig/Contig-U10938-1Q.Seq.d
         (1627 letters)

Database: nrp_A
           3,204,285 sequences; 1,040,966,779 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

CP000875_1990(CP000875|pid:none) Herpetosiphon aurantiacus ATCC ...    57   3e-06
CP001325_346(CP001325|pid:none) Micromonas sp. RCC299 chromosome...    52   5e-05
CP001089_2883(CP001089|pid:none) Geobacter lovleyi SZ, complete ...    46   0.004
CP000300_1831(CP000300|pid:none) Methanococcoides burtonii DSM 6...    45   0.006
CP000685_2617(CP000685|pid:none) Flavobacterium johnsoniae UW101...    45   0.008
BA000016_1875(BA000016|pid:none) Clostridium perfringens str. 13...    43   0.038
AP007255_3422(AP007255|pid:none) Magnetospirillum magneticum AMB...    42   0.064
FJ236863_1(FJ236863|pid:none) Hydra magnipapillata nematoblast-s...    39   0.54
CP000875_1951(CP000875|pid:none) Herpetosiphon aurantiacus ATCC ...    39   0.71
CP000607_417(CP000607|pid:none) Chlorobium phaeovibrioides DSM 2...    39   0.71
CP000806_698(CP000806|pid:none) Cyanothece sp. ATCC 51142 circul...    38   0.93
CP000282_3307(CP000282|pid:none) Saccharophagus degradans 2-40, ...    37   2.1
CP000096_363(CP000096|pid:none) Pelodictyon luteolum DSM 273, co...    37   2.1
CP000777_2644(CP000777|pid:none) Leptospira biflexa serovar Pato...    37   2.7
CP001184_106(CP001184|pid:none) Ureaplasma urealyticum serovar 1...    35   6.0
CP001322_2272(CP001322|pid:none) Desulfatibacillum alkenivorans ...    35   7.9
CP001251_1669(CP001251|pid:none) Dictyoglomus turgidum DSM 6724,...    35   7.9
CP000300_794(CP000300|pid:none) Methanococcoides burtonii DSM 62...    35   7.9

>CP000875_1990(CP000875|pid:none) Herpetosiphon aurantiacus ATCC
            23779, complete genome.
          Length = 3907

 Score = 56.6 bits (135), Expect = 3e-06
 Identities = 40/152 (26%), Positives = 71/152 (46%), Gaps = 7/152 (4%)
 Frame = +1

Query: 931  NLDDHYTLMAWVKPSTFSD----QRIIDKNHAGTISGYNFDIQKTSGGRGVARLCAGTAC 1098
            NL + +T++AWVKP T +D    QR I      +++G+ F +  ++   G+     G
Sbjct: 2973 NLQNQFTILAWVKPDTITDTTSLQRFIAAGRDNSVNGFGFGLSGSALNFGI----FGGFK 3028

Query: 1099 FESFKSIPNDLWSHVAVVFSCNNLDVQKNRVTFYINGVFNAEFDNFKPTKI-NDFPLVIG 1275
            + S  ++   +W  VAVVF  +      N   FY++G +             ND PL IG
Sbjct: 3029 YSSSATVAPRVWQQVAVVFDAS------NDAKFYLDGEYIDTIAGSSAVPANNDDPLFIG 3082

Query: 1276 KSGKKTE--STSYHGMIDDIMIFNISLTSDDI 1365
             S  +    +  + G +D++ I+   L++ +I
Sbjct: 3083 ASTDQQGLFNDQFRGQLDELTIYQRELSTAEI 3114

 Score = 42.4 bits (98), Expect = 0.049
 Identities = 47/163 (28%), Positives = 75/163 (46%), Gaps = 14/163 (8%)
 Frame = +1

Query: 946  YTLMAWVKPSTFSDQRIIDKNHA------GTISGY-NFDIQKTSGGRGVARLCAGTACFE 1104
            +TL AWVK +T + Q II KN        G  S Y N + Q T  G        G
Sbjct: 1689 FTLAAWVK-TTSTKQAIITKNDGDSTWERGEKSFYINANGQPTFVG-------FGNNYIT 1740

Query: 1105 SFKSIPNDLWSHVAVVFSCNNLDVQKNRVTFYINGV--FNAEFDNFKPT---KINDFPLV 1269
            S +S+ +D W HVAV +   NL       T YI+G+   N    N++       ND  L
Sbjct: 1741 SNQSVNDDRWHHVAVEWDYPNL-----TGTIYIDGIDRTNRTSTNYRTNNRDNAND-TLK 1794

Query: 1270 IGK--SGKKTESTSYHGMIDDIMIFNISLTSDDIKYVLSSKPN 1392
            +G+  S     + ++ G++D++ +F+ +L +  I  ++  + N
Sbjct: 1795 VGRNNSNSNEAANNFKGLLDEVAVFDRTLGTAQINDLMQGRYN 1837

 Score = 41.6 bits (96), Expect = 0.084
 Identities = 45/184 (24%), Positives = 73/184 (39%), Gaps = 7/184 (3%)
 Frame = +1

Query: 949  TLMAWVKPSTFSDQRIIDKNHA-GTISGY-NFDIQKTSGGRGVARLCAGTACFESFKSIP 1122
            T+ AWV  ++ +   + + N+A G    Y NF I     G   +    G A F     +P
Sbjct: 2659 TIAAWVNGNSGTIADLRNPNNATGLRLAYDNFLITIDLDGSTAS---GGNASFVVPFELP 2715

Query: 1123 NDLWSHVAVVFSCNNLDVQKNRVTFYINGVFNAEF-----DNFKPTKINDFPLVIGKSGK 1287
               WSHV       N D      T YING   A       +    +  + FP +    G
Sbjct: 2716 EGQWSHVVA-----NYDKTNQLATVYINGQLAASTALPGANGTHASLSSQFPTIGANQGD 2770

Query: 1288 KTESTSYHGMIDDIMIFNISLTSDDIKYVLSSKPNLSTFKFANDLQLFYDFDYNPNNPKS 1467
              +   Y G +DD+ I+ + L++  I+ +  +   +          L ++FD   N  +
Sbjct: 2771 GGDF--YRGYLDDLRIYQVVLSASQIQSLYKTSAPI----------LKFEFDEEQNTSEF 2818

Query: 1468 HDRN 1479
            HDR+
Sbjct: 2819 HDRS 2822

Lambda     K      H
   0.318    0.134    0.401

Gapped
Lambda     K      H
   0.267   0.0410    0.140

Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Sequences: 3204285
Number of Hits to DB: 1,791,566,692
Number of extensions: 31476382
Number of successful extensions: 78030
Number of sequences better than 10.0: 18
Number of HSP's gapped: 77897
Number of HSP's successfully gapped: 32
Length of query: 542
Length of database: 1,040,966,779
Length adjustment: 134
Effective length of query: 408
Effective length of database: 611,592,589
Effective search space: 249529776312
Effective search space used: 249529776312
Neighboring words threshold: 12
Window for multiple hits: 40
X1: 16 ( 7.3 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 41 (21.7 bits)
S2: 32 (16.9 bits)