Dictyostelium discoideum cDNA Contig-U10938-1

Assembled

Chromosomal Location of Contig-U10938-1

Sequence Contig-U10938-1

ATTTTATTTT TATAGTATTC TCTTTTAAAA AAAAAACAAT AACATATTAT
TATTTGAATA TTTTTCAAAT TTAAAATTAT TTATTTAAAA CAACACAACA
GAAACAATTC ATATATATAA TTATATTAGA TACAAATAGA TATAGATATA
ATAAATAAAT AAATAAATAT ATATAAATAT ATATATTTAT AAATATATAT
TTGTAAATAT ATAAATATAA AATGAAATGT ATATCAAATA TAACATCAAG
TAGCAGAAAA CAAAAATTTT TAATTTTATT TATCCTTGTT GCAAGTTCTA
TATTGTTGAT GTTTTATGAT GAATTTAGTT TTATAACAGT ATTTAATAAA
GACAACAACA ACAACAACAA CAACAACAAC AACTATAGAA CAAATCAATT
TAAAGATAAC GATAATATTT TTTACACTAA TCGAATTTTA GAAGAAACTA
GGAATTCAGA TGTTGTCATT TTTCTATGGG ATCCATCATC AGAACGCGAT
GATTGGACAG GAATTTTAAA ATCTAATAAT TTAGTAACAC AACAACAAAT
TGATGATTAT AATAATAAAA AATCTTTATT TACTTCAACA ACATCAACAA
CTTCTCATCC TTATACTAGT AGTAGAAGTA GTACTAGTAC TAGTAGTAGA
AGTAGTACTA GTACTAGTAG TAGAAGTAGT ACTAGTGGAG GTAGAAGTAG
TAGTGGAGGT AGTAGTACTA GTAGTGGAGG TAGTAGTACT AGTAGTGGAA
GTAGTAGTAC AACTAGTAGT AGAAGGTAGT AGTACCACTA GTAGAAGTAG
TAGTACTACT GGT------- ---TGTTTCA ACCAATATTG GATATTATAC
ACCCCAATTT GTGTCAATGA AAGGATTGGG TGACCCATAT CTTTGTCAAT
AGGAATGAAG ATACTTGTAA GAATTGTTTT AATCTTGATG ATCATTATAC
CCTAATGGCA TGGGTCAAGC CATCAACATT CTCTGATCAG AGAATTATTG
ATAAGAATCA TGCGGGAACA ATTAGTGGAT ACAATTTCGA TATTCAAAAG
ACATCAGGTG GTCGTGGTGT GGCTAGACTA TGTGCGGGTA CAGCATGTTT
TGAATCCTTC AAGAGTATAC CCAACGATTT ATGGTCACAT GTTGCTGTGG
TGTTTAGTTG TAATAATTTA GATGTTCAAA AGAATCGTGT CACTTTTTAT
ATAAATGGTG TGTTTAATGC AGAGTTTGAT AATTTTAAAC CAACTAAAAT
TAATGACTTC CCTTTGGTAA TTGGTAAATC TGGTAAAAAA ACTGAATCAA
CAAGTTATCA TGGTATGATT GATGATATAA TGATCTTTAA TATCTCTCTA
ACCTCTGATG ATATCAAATA TGTACTCTCT TCAAAACCAA ATCTTTCCAC
CTTTAAATTT GCAAATGATC TTCAACTCTT TTATGATTTC GATTATAATC
CAAATAATCC AAAATCACAT GATCGTAATA TAGTTCGTGA TAAATCAATT
TATAAAAATG ATGGTACCTT TGCTAGTGGT TCAAGTGATG ACTATTCTGA
AAAAATAACT TCAATAAGTA AAGAAATATC TTTTAATAAA AAATTATAAA
AAAATAAAAC TAATAATAAT AATAATA

Translated Amino Acid Sequence Contig-U10938-1

ilfl*ysllkkkq*hiii*iffkfkiiylkqhnrnnsyi*ly*iqididiink*iniyky
iyl*iyickyinik*nvyqi*hqvaenknf*fylsllqvlyc*cfmmnlvl*qylikttt
ttttttttieqinlkitiifftlief*kklgiqmlsffygihhqnamigqef*nlii**H
NNKLMIIIIKNLYLLQQHQQLLILILVVEVVLVLVVEVVLVLVVEVVLVEVEVVVEVVVL
VVEVVVLVVEVVVQLVVEGSSTTSRSSSTTG---

---VSTNIGYYTPQFVSMKGLGDPYLCQ*e*ryl*elf*s**slypngmgqainil*sen
y**escgnn*wiqfryskdirwswcg*tmcgysmf*ilqeytqrfmvtcccgv*l**frc
skeschflykwcv*crv**f*tn*n**lpfgnw*iw*kn*inklswyd**yndl*ylsnl
**yqictlfktksfhl*ick*sstll*frl*sk*skit*s*yss**inl*k*wylc*wfk
**lf*knnfnk*rnif**kiikk*n*****

Homology Contig-U10938-1 vs CSM-Contig

Sequences producing significant alignments:                        (bits)  Value


Contig-U10938-1 (Contig-U10938-1Q) /CSM_Contig/Conti...  1396  0.0
Contig-U09255-1 (Contig-U09255-1Q) /CSM_Contig/Conti...    40  0.007
Contig-U05909-1 (Contig-U05909-1Q) /CSM_Contig/Conti...    40  0.007
Contig-U13760-1 (Contig-U13760-1Q) /CSM_Contig/Conti...    38  0.029
Contig-U13069-1 (Contig-U13069-1Q) /CSM_Contig/Conti...    38  0.029
Contig-U12561-1 (Contig-U12561-1Q) /CSM_Contig/Conti...    38  0.029
Contig-U11598-1 (Contig-U11598-1Q) /CSM_Contig/Conti...    38  0.029
Contig-U10975-1 (Contig-U10975-1Q) /CSM_Contig/Conti...    38  0.029
Contig-U08853-1 (Contig-U08853-1Q) /CSM_Contig/Conti...    38  0.029
Contig-U06745-1 (Contig-U06745-1Q) /CSM_Contig/Conti...    38  0.029

Homology Contig-U10938-1 vs DNA

Sequences producing significant alignments:                  (bits) Value  N


(BJ409048) Dictyostelium discoideum cDNA clone:dds47h21, 3' ...   837   0.0    2
(BJ350336) Dictyostelium discoideum cDNA clone:dda39c14, 3' ...   793   0.0    3
(BJ343796) Dictyostelium discoideum cDNA clone:dda17p03, 3' ...   793   0.0    3
(BJ385247) Dictyostelium discoideum cDNA clone:ddc54g08, 3' ...   787   0.0    3
(BJ348859) Dictyostelium discoideum cDNA clone:dda34i14, 3' ...   781   0.0    2
(BJ402597) Dictyostelium discoideum cDNA clone:dds17o08, 3' ...   777   0.0    2
(BJ348804) Dictyostelium discoideum cDNA clone:dda34n08, 3' ...   775   0.0    2
(BJ355762) Dictyostelium discoideum cDNA clone:dda58k02, 3' ...   676   0.0    2
(BJ355990) Dictyostelium discoideum cDNA clone:dda58k20, 3' ...   634   0.0    2
(BJ355934) Dictyostelium discoideum cDNA clone:dda58o14, 3' ...   597   0.0    2

Homology Contig-U10938-1 vs Protein

Sequences producing significant alignments:                      (bits) Value


CP000875_1990(CP000875|pid:none) Herpetosiphon aurantiacus ATCC ...    57   3e-06
CP001325_346(CP001325|pid:none) Micromonas sp. RCC299 chromosome...    52   5e-05
CP001089_2883(CP001089|pid:none) Geobacter lovleyi SZ, complete ...    46   0.004
CP000300_1831(CP000300|pid:none) Methanococcoides burtonii DSM 6...    45   0.006
CP000685_2617(CP000685|pid:none) Flavobacterium johnsoniae UW101...    45   0.008
BA000016_1875(BA000016|pid:none) Clostridium perfringens str. 13...    43   0.038
AP007255_3422(AP007255|pid:none) Magnetospirillum magneticum AMB...    42   0.064
FJ236863_1(FJ236863|pid:none) Hydra magnipapillata nematoblast-s...    39   0.54
CP000875_1951(CP000875|pid:none) Herpetosiphon aurantiacus ATCC ...    39   0.71
CP000607_417(CP000607|pid:none) Chlorobium phaeovibrioides DSM 2...    39   0.71