Homology Contig-U10938-1 vs DNA
Query= Contig-U10938-1 (Contig-U10938-1Q) /CSM_Contig/Contig-U10938-1Q.Seq.d
(1627 letters)
Database: ddbj_A
108,600,042 sequences; 106,710,029,556 total letters
Searching..................................................done
Score E
Sequences producing significant alignments: (bits) Value N
(BJ409048) Dictyostelium discoideum cDNA clone:dds47h21, 3' ... 837 0.0 2
(BJ350336) Dictyostelium discoideum cDNA clone:dda39c14, 3' ... 793 0.0 3
(BJ343796) Dictyostelium discoideum cDNA clone:dda17p03, 3' ... 793 0.0 3
(BJ385247) Dictyostelium discoideum cDNA clone:ddc54g08, 3' ... 787 0.0 3
(BJ348859) Dictyostelium discoideum cDNA clone:dda34i14, 3' ... 781 0.0 2
(BJ402597) Dictyostelium discoideum cDNA clone:dds17o08, 3' ... 777 0.0 2
(BJ348804) Dictyostelium discoideum cDNA clone:dda34n08, 3' ... 775 0.0 2
(BJ355762) Dictyostelium discoideum cDNA clone:dda58k02, 3' ... 676 0.0 2
(BJ355990) Dictyostelium discoideum cDNA clone:dda58k20, 3' ... 634 0.0 2
(BJ355934) Dictyostelium discoideum cDNA clone:dda58o14, 3' ... 597 0.0 2
(BJ406351) Dictyostelium discoideum cDNA clone:dds35a03, 3' ... 765 0.0 2
(BJ357234) Dictyostelium discoideum cDNA clone:dda62j21, 3' ... 517 0.0 2
(BJ357159) Dictyostelium discoideum cDNA clone:dda62l13, 3' ... 504 0.0 2
(BJ326612) Dictyostelium discoideum cDNA clone:dda17p03, 5' ... 456 e-167 2
(BJ331266) Dictyostelium discoideum cDNA clone:dda34i14, 5' ... 456 e-167 2
(BJ332545) Dictyostelium discoideum cDNA clone:dda39c14, 5' ... 444 e-164 4
(BJ397839) Dictyostelium discoideum cDNA clone:dds47h21, 5' ... 438 e-163 4
(BJ394398) Dictyostelium discoideum cDNA clone:dds35a03, 5' ... 430 e-160 4
(BJ339657) Dictyostelium discoideum cDNA clone:dda58k20, 5' ... 329 e-137 4
(BJ370491) Dictyostelium discoideum cDNA clone:ddc54g08, 5' ... 456 e-131 2
(BJ337781) Dictyostelium discoideum cDNA clone:dda58o14, 5' ... 303 e-127 4
(BJ356743) Dictyostelium discoideum cDNA clone:dda61f07, 3' ... 466 e-126 1
(BJ331223) Dictyostelium discoideum cDNA clone:dda34n08, 5' ... 391 e-121 2
(BJ369245) Dictyostelium discoideum cDNA clone:ddc49g23, 5' ... 280 e-118 4
(BJ338697) Dictyostelium discoideum cDNA clone:dda62l13, 5' ... 167 5e-71 3
(BJ338748) Dictyostelium discoideum cDNA clone:dda62j21, 5' ... 72 1e-09 2
(DH012371) Oryzias latipes Fosmid clone:GOLWFno96_n20, forwa... 38 0.043 2
(CW953164) TcB39.1_G01_SP6 Tribolium BAC library Tribolium c... 40 0.13 3
(AC233385) Solanum tuberosum chromosome 1 clone RH044F21, **... 50 0.29 1
(AC122286) Mus musculus BAC clone RP23-252F4 from chromosome... 44 0.41 6
(AC123513) Dictyostelium discoideum strain AX4 chromosome 2 ... 38 0.55 6
(AM427616) Vitis vinifera contig VV78X119916.20, whole genom... 42 0.63 3
(BX640462) Zebrafish DNA sequence from clone CH211-153D8 in ... 48 1.1 1
(BX537162) Zebrafish DNA sequence from clone DKEY-9A20 in li... 48 1.1 1
(CR376768) Zebrafish DNA sequence *** SEQUENCING CANCELLED *... 48 1.1 1
(FH527771) CHO_OF4726xm09r1.ab1 CHO_OF4 Nicotiana tabacum ge... 48 1.1 1
(DU038508) 21722 Tomato HindIII BAC Library Solanum lycopers... 48 1.1 1
(FG695682) G1144P330RK9.T0 Anolis carolinensis pooled normal... 48 1.1 1
(FG695634) G1144P330FK9.T0 Anolis carolinensis pooled normal... 48 1.1 1
(EY384411) CAXA5136.rev CAXA Helobdella robusta Subtracted L... 48 1.1 1
(EY377871) CAXA16955.rev CAXA Helobdella robusta Subtracted ... 48 1.1 1
(ER575621) 1093015810391 Global-Ocean-Sampling_GS-36-01-01-2... 38 1.5 3
(AF538053) Monosiga brevicollis mitochondrion, complete genome. 32 1.8 7
(AC130470) Homo sapiens chromosome 16 clone RP11-143P24, com... 38 2.2 4
(AC104641) Homo sapiens 3 BAC RP11-786O7 (Roswell Park Cance... 42 2.3 3
(DQ366745) Uncultured Prochlorococcus marinus clone HOT0M-9F... 40 2.4 3
(X16522) Dictyostelium discoiedeum AAC-rich mRNA (AAC11). 34 3.7 3
(CR388060) Zebrafish DNA sequence from clone DKEY-208J8 in l... 46 4.5 1
(BX931854) Gallus gallus finished cDNA, clone ChEST789c8. 46 4.5 1
(BX931171) Gallus gallus finished cDNA, clone ChEST584d23. 46 4.5 1
(BX927222) Zebrafish DNA sequence from clone CH211-256M12 in... 46 4.5 1
(AC216641) Latimeria menadoensis, clone VMRC4-97N21, complet... 46 4.5 1
(CT009613) Mouse DNA sequence from clone RP23-55L9 on chromo... 46 4.5 1
(AC171335) Mus musculus BAC clone RP23-2K15 from chromosome ... 46 4.5 1
(AC140433) Mus musculus BAC clone RP23-96L16 from chromosome... 46 4.5 1
(AC121818) Mus musculus BAC clone RP23-459J16 from chromosom... 46 4.5 1
(AC136505) Medicago truncatula clone mth2-24f15, complete se... 46 4.5 1
(AC130105) Rattus norvegicus clone CH230-4C19, *** SEQUENCIN... 46 4.5 1
(AC097918) Rattus norvegicus clone CH230-14K5, *** SEQUENCIN... 46 4.5 1
(AC181763) Strongylocentrotus purpuratus clone R3-1036A17, W... 46 4.5 1
(AC180197) Strongylocentrotus purpuratus clone R3-3003M16, W... 46 4.5 1
(AC180165) Strongylocentrotus purpuratus clone R3-4003E15, W... 46 4.5 1
(ER611738) 1093016315184 Global-Ocean-Sampling_GS-36-01-01-2... 46 4.5 1
(EI315699) GM_WBc0048N10.r GM_WBc Glycine max genomic clone ... 46 4.5 1
(CU964259) Brassica napus GSS, clone JBnB007L16, end read, p... 46 4.5 1
(EG782163) EST_ssal_evd_38731 ssalevd thymus Salmo salar cDN... 46 4.5 1
(BU470400) 603362992F1 CSEQRBN21 Gallus gallus cDNA clone Ch... 46 4.5 1
(BU286130) 603604690F1 CSEQCHN55 Gallus gallus cDNA clone Ch... 46 4.5 1
(FG793546) G1148P311RA12.T0 Anolis carolinensis pooled norma... 46 4.5 1
(FG668115) G1143P32RE1.T0 Anolis carolinensis pooled normali... 46 4.5 1
(EV412112) 153-002-F05 Fundulus heteroclitus 153 Fundulus he... 46 4.5 1
(FJ171325) Polystoechotes punctatus mitochondrion, complete ... 38 5.3 3
(DM017627) Detection of human papilloma virus. 40 5.3 3
(DM017626) Detection of human papilloma virus. 40 5.3 3
(AC196924) Dasypus novemcinctus clone VMRC5-97G12, WORKING D... 44 5.5 5
(FP236565) Pig DNA sequence *** SEQUENCING IN PROGRESS *** f... 42 6.8 7
(AK342420) Acyrthosiphon pisum ACYPI001319 mRNA, clone: 407C... 40 8.0 2
(AC152348) Medicago truncatula clone mth2-52e17, complete se... 34 8.0 6
(AC016515) Homo sapiens clone RP11-16M19, WORKING DRAFT SEQU... 38 8.1 4
(CU292092) Equus caballus GSS, BAC clone CH241-454E19, T7 en... 36 9.7 2
>(BJ409048) Dictyostelium discoideum cDNA clone:dds47h21, 3' end,
single read.
Length = 710
Score = 837 bits (422), Expect(2) = 0.0
Identities = 422/422 (100%)
Strand = Plus / Minus
Query: 863 gtcaatgaaaggattgggtgacccatatctttgtcaataggaatgaagatacttgtaaga 922
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 710 gtcaatgaaaggattgggtgacccatatctttgtcaataggaatgaagatacttgtaaga 651
Query: 923 attgttttaatcttgatgatcattataccctaatggcatgggtcaagccatcaacattct 982
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 650 attgttttaatcttgatgatcattataccctaatggcatgggtcaagccatcaacattct 591
Query: 983 ctgatcagagaattattgataagaatcatgcgggaacaattagtggatacaatttcgata 1042
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 590 ctgatcagagaattattgataagaatcatgcgggaacaattagtggatacaatttcgata 531
Query: 1043 ttcaaaagacatcaggtggtcgtggtgtggctagactatgtgcgggtacagcatgttttg 1102
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 530 ttcaaaagacatcaggtggtcgtggtgtggctagactatgtgcgggtacagcatgttttg 471
Query: 1103 aatccttcaagagtatacccaacgatttatggtcacatgttgctgtggtgtttagttgta 1162
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 470 aatccttcaagagtatacccaacgatttatggtcacatgttgctgtggtgtttagttgta 411
Query: 1163 ataatttagatgttcaaaagaatcgtgtcactttttatataaatggtgtgtttaatgcag 1222
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 410 ataatttagatgttcaaaagaatcgtgtcactttttatataaatggtgtgtttaatgcag 351
Query: 1223 agtttgataattttaaaccaactaaaattaatgacttccctttggtaattggtaaatctg 1282
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 350 agtttgataattttaaaccaactaaaattaatgacttccctttggtaattggtaaatctg 291
Query: 1283 gt 1284
||
Sbjct: 290 gt 289
Score = 466 bits (235), Expect(2) = 0.0
Identities = 235/235 (100%)
Strand = Plus / Minus
Query: 1292 ctgaatcaacaagttatcatggtatgattgatgatataatgatctttaatatctctctaa 1351
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 281 ctgaatcaacaagttatcatggtatgattgatgatataatgatctttaatatctctctaa 222
Query: 1352 cctctgatgatatcaaatatgtactctcttcaaaaccaaatctttccacctttaaatttg 1411
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 221 cctctgatgatatcaaatatgtactctcttcaaaaccaaatctttccacctttaaatttg 162
Query: 1412 caaatgatcttcaactcttttatgatttcgattataatccaaataatccaaaatcacatg 1471
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 161 caaatgatcttcaactcttttatgatttcgattataatccaaataatccaaaatcacatg 102
Query: 1472 atcgtaatatagttcgtgataaatcaatttataaaaatgatggtacctttgctag 1526
|||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 101 atcgtaatatagttcgtgataaatcaatttataaaaatgatggtacctttgctag 47
Lambda K H
1.37 0.711 1.31
Matrix: blastn matrix:1 -3
Number of Sequences: 108600042
Number of Hits to DB: 1,543,490,487
Number of extensions: 100458731
Number of successful extensions: 8540455
Number of sequences better than 10.0: 81
Length of query: 1627
Length of database: 106,710,029,556
Length adjustment: 24
Effective length of query: 1603
Effective length of database: 104,103,628,548
Effective search space: 166878116562444
Effective search space used: 166878116562444
X1: 11 (21.8 bits)
S2: 22 (44.1 bits)
Dictyostelium discoideum cDNA Project Home