Homology Contig-U10935-1 vs Protein
Query= Contig-U10935-1 (Contig-U10935-1Q) /CSM_Contig/Contig-U10935-1Q.Seq.d
(2315 letters)
Database: nrp_A
3,204,285 sequences; 1,040,966,779 total letters
Searching..................................................done
Score E
Sequences producing significant alignments: (bits) Value
BC081230_1(BC081230|pid:none) Xenopus laevis hypothetical protei... 186 4e-45
BC067020_1(BC067020|pid:none) Mus musculus Sec24 related gene fa... 185 7e-45
AB383977_1(AB383977|pid:none) Synthetic construct DNA, clone: pF... 184 1e-44
AK001390_1(AK001390|pid:none) Homo sapiens cDNA FLJ10528 fis, cl... 184 1e-44
AK291765_1(AK291765|pid:none) Homo sapiens cDNA FLJ78676 complet... 184 1e-44
BC035761_1(BC035761|pid:none) Homo sapiens SEC24 family, member ... 184 1e-44
BC082352_1(BC082352|pid:none) Xenopus laevis MGC80413 protein, m... 184 2e-44
AK299826_1(AK299826|pid:none) Homo sapiens cDNA FLJ60345 complet... 182 4e-44
CU633865_136(CU633865|pid:none) Podospora anserina genomic DNA c... 182 5e-44
CR860827_1(CR860827|pid:none) Pongo abelii mRNA; cDNA DKFZp469D1... 182 6e-44
(P53992) RecName: Full=Protein transport protein Sec24C; AltName... 181 8e-44
CR859229_1(CR859229|pid:none) Pongo abelii mRNA; cDNA DKFZp459J1... 181 1e-43
BC168663_1(BC168663|pid:none) Rattus norvegicus similar to SEC24... 179 3e-43
(Q54U61) RecName: Full=Protein transport protein SEC24; 166 5e-39
AM920427_1583(AM920427|pid:none) Penicillium chrysogenum Wiscons... 161 1e-37
(Q9M291) RecName: Full=Protein transport protein Sec24-like CEF;... 160 2e-37
(Q9M081) RecName: Full=Putative protein transport protein Sec24-... 160 2e-37
CR855030_5(CR855030|pid:none) Oryza sativa genomic DNA, chromoso... 159 6e-37
AL662964_17(AL662964|pid:none) Oryza sativa genomic DNA, chromos... 159 6e-37
FN357487_14(FN357487|pid:none) Schistosoma mansoni genome sequen... 158 9e-37
BT064480_1(BT064480|pid:none) Zea mays full-length cDNA clone ZM... 151 9e-35
AL138641_2(AL138641|pid:none) Arabidopsis thaliana DNA chromosom... 150 2e-34
CR382131_577(CR382131|pid:none) Yarrowia lipolytica strain CLIB1... 150 3e-34
CP001574_315(CP001574|pid:none) Micromonas sp. RCC299 chromosome... 149 3e-34
BT070805_1(BT070805|pid:none) Picea sitchensis clone WS02750_N05... 145 6e-33
CP001577_61(CP001577|pid:none) Micromonas sp. RCC299 chromosome ... 145 8e-33
AC012395_23(AC012395|pid:none) Arabidopsis thaliana chromosome I... 143 2e-32
(Q9USS7) RecName: Full=Uncharacterized protein C4.03c; &AL12186... 137 2e-30
CP001141_71(CP001141|pid:none) Phaeodactylum tricornutum CCAP 10... 135 9e-30
(Q9UUI5) RecName: Full=Protein transport protein sec24; &AL1098... 134 1e-29
(Q6BT80) RecName: Full=Protein transport protein SEC24; &CR3821... 134 1e-29
(A6QNT8) RecName: Full=Protein transport protein Sec24A; AltName... 132 7e-29
CR382137_883(CR382137|pid:none) Debaryomyces hansenii strain CBS... 132 7e-29
AK304060_1(AK304060|pid:none) Homo sapiens cDNA FLJ61651 complet... 131 9e-29
(O95486) RecName: Full=Protein transport protein Sec24A; AltName... 131 9e-29
AJ131244_1(AJ131244|pid:none) Homo sapiens mRNA for Sec24 protei... 131 9e-29
AK029139_1(AK029139|pid:none) Mus musculus 10 days neonate skin ... 130 3e-28
AL645602_14(AL645602|pid:none) Mouse DNA sequence from clone RP2... 129 4e-28
(P38810) RecName: Full=SED5-binding protein 3; AltName: Full=SEC... 129 4e-28
(O95487) RecName: Full=Protein transport protein Sec24B; AltName... 128 1e-27
AK304234_1(AK304234|pid:none) Homo sapiens cDNA FLJ54322 complet... 128 1e-27
AK152339_1(AK152339|pid:none) Mus musculus bone marrow macrophag... 128 1e-27
(Q875Q0) RecName: Full=Protein transport protein SEC24; Flags: F... 127 2e-27
(Q4P9K4) RecName: Full=Protein transport protein SEC24; 127 2e-27
DQ683204_1(DQ683204|pid:none) Pichia pastoris Lst1p, genomic DNA. 127 2e-27
FN392322_509(FN392322|pid:none) Pichia pastoris GS115 chromosome... 127 2e-27
AE013599_979(AE013599|pid:none) Drosophila melanogaster chromoso... 120 3e-25
(Q5AQ76) RecName: Full=Protein transport protein SEC24; 119 4e-25
(Q2ULI0) RecName: Full=Protein transport protein sec24; &AP0071... 119 4e-25
BC057355_1(BC057355|pid:none) Mus musculus Sec24 related gene fa... 119 5e-25
(Q1E6U9) RecName: Full=Protein transport protein SEC24; 118 8e-25
(A2QSG6) RecName: Full=Protein transport protein sec24; &AM2701... 118 8e-25
AM910993_97(AM910993|pid:none) Plasmodium knowlesi strain H chro... 118 1e-24
(Q4WLP1) RecName: Full=Protein transport protein sec24; 117 2e-24
(Q0PVD8) RecName: Full=Protein transport protein SEC24; &DQ6832... 117 2e-24
(A1CUC3) RecName: Full=Protein transport protein sec24; 117 2e-24
(Q876F5) RecName: Full=Protein transport protein SEC24-2; &AY14... 116 4e-24
CU928171_406(CU928171|pid:none) Kluyveromyces thermotolerans str... 115 5e-24
AP008217_910(AP008217|pid:none) Oryza sativa (japonica cultivar-... 115 5e-24
(P40482) RecName: Full=Protein transport protein SEC24; AltName:... 115 9e-24
CU607053_35(CU607053|pid:none) Podospora anserina genomic DNA ch... 114 2e-23
(Q86ZK8) RecName: Full=Protein transport protein SEC24; &BX0887... 114 2e-23
(Q875V8) RecName: Full=Protein transport protein SEC24-1; &AY14... 113 3e-23
H88859(H88859)protein ZC518.2 [imported] - Caenorhabditis elegans 110 2e-22
(Q5KMW6) RecName: Full=Protein transport protein SEC24; &AE0173... 110 2e-22
AE017342_26(AE017342|pid:none) Cryptococcus neoformans var. neof... 110 2e-22
(Q2HH63) RecName: Full=Protein transport protein SEC24; 108 7e-22
(Q6CLE0) RecName: Full=Protein transport protein SEC24; &CR3821... 108 7e-22
(Q6FWD3) RecName: Full=Protein transport protein SEC24-2; &CR38... 107 1e-21
CR382126_947(CR382126|pid:none) Kluyveromyces lactis strain NRRL... 107 1e-21
(A4QUL1) RecName: Full=Protein transport protein SEC24; 103 3e-20
AC159411_38(AC159411|pid:none) Trypanosoma brucei chromosome 3 c... 103 4e-20
(Q6C2T4) RecName: Full=Protein transport protein SEC24; &CR3821... 102 6e-20
CP000080_22(CP000080|pid:none) Leishmania major strain Friedlin ... 102 8e-20
AK303085_1(AK303085|pid:none) Homo sapiens cDNA FLJ60379 complet... 102 8e-20
AM494966_23(AM494966|pid:none) Leishmania braziliensis chromosom... 101 1e-19
BC049257_1(BC049257|pid:none) Mus musculus Sec24 related gene fa... 101 1e-19
AK316451_1(AK316451|pid:none) Homo sapiens cDNA, FLJ79350 comple... 100 3e-19
AM502247_38(AM502247|pid:none) Leishmania infantum chromosome 29. 99 7e-19
CT005264_137(CT005264|pid:none) Leishmania major strain Friedlin... 96 6e-18
(Q875V7) RecName: Full=Protein transport protein SEC24-2; &AY14... 96 6e-18
(Q876F4) RecName: Full=Protein transport protein SEC24-1; &AY14... 89 5e-16
X94547_1(X94547|pid:none) S.cerevisiae 12.8 kb DNA from left arm... 89 7e-16
(P53953) RecName: Full=SED5-binding protein 2; AltName: Full=SEC... 89 7e-16
AM910985_29(AM910985|pid:none) Plasmodium knowlesi strain H chro... 86 8e-15
AK125962_1(AK125962|pid:none) Homo sapiens cDNA FLJ43974 fis, cl... 83 5e-14
AL844503_49(AL844503|pid:none) Plasmodium falciparum 3D7 chromos... 83 5e-14
BC117906_1(BC117906|pid:none) Mus musculus Sec24 related gene fa... 80 4e-13
D89149_1(D89149|pid:none) Schizosaccharomyces pombe mRNA, partia... 79 9e-13
EF678487_1(EF678487|pid:none) Picea sitchensis clone WS02925_E15... 75 1e-11
AL034557_50(AL034557|pid:none) Plasmodium falciparum MAL4P1. 75 1e-11
CR940347_813(CR940347|pid:none) Theileria annulata strain Ankara... 72 1e-10
CP001575_560(CP001575|pid:none) Micromonas sp. RCC299 chromosome... 66 6e-09
AY810367_1(AY810367|pid:none) Schistosoma japonicum SJCHGC09331 ... 66 6e-09
CR848481_1(CR848481|pid:none) Xenopus tropicalis finished cDNA, ... 64 3e-08
BX511148_4(BX511148|pid:none) Zebrafish DNA sequence from clone ... 64 3e-08
FN357311_35(FN357311|pid:none) Schistosoma mansoni genome sequen... 64 3e-08
AM461123_3(AM461123|pid:none) Vitis vinifera contig VV78X094631.... 57 2e-06
AP004399_10(AP004399|pid:none) Oryza sativa Japonica Group genom... 57 3e-06
AF488675_1(AF488675|pid:none) Plasmodium falciparum putative Sec... 57 4e-06
AC147484_12(AC147484|pid:none) Medicago truncatula clone mth2-52... 54 3e-05
FN357311_36(FN357311|pid:none) Schistosoma mansoni genome sequen... 53 6e-05
AC153129_2(AC153129|pid:none) Medicago truncatula clone mth2-103... 53 6e-05
CP000588_324(CP000588|pid:none) Ostreococcus lucimarinus CCE9901... 52 7e-05
A71403(A71403) probable transport protein - Arabidopsis thaliana... 52 1e-04
AY074391_1(AY074391|pid:none) Arabidopsis thaliana putative tran... 52 1e-04
AK000709_1(AK000709|pid:none) Homo sapiens cDNA FLJ20702 fis, cl... 51 2e-04
DQ683201_1(DQ683201|pid:none) Pichia pastoris Sec23 gene, genomi... 49 0.001
AM473059_1(AM473059|pid:none) Vitis vinifera contig VV78X268249.... 48 0.001
AL590442_121(AL590442|pid:none) chromosome II of strain GB-M1 of... 48 0.001
BC135087_1(BC135087|pid:none) Danio rerio wu:fd10d12, mRNA (cDNA... 47 0.004
AB026652_1(AB026652|pid:none) Arabidopsis thaliana genomic DNA, ... 45 0.015
AB023036_15(AB023036|pid:none) Arabidopsis thaliana genomic DNA,... 45 0.015
AB261032_1(AB261032|pid:none) Entamoeba histolytica gene for EhS... 44 0.020
BT003332_1(BT003332|pid:none) Arabidopsis thaliana Unknown prote... 44 0.020
AJ276482_1(AJ276482|pid:none) Drosophila melanogaster putative s... 43 0.044
FN357914_17(FN357914|pid:none) Schistosoma mansoni genome sequen... 43 0.044
AC133931_3(AC133931|pid:none) Oryza sativa (japonica cultivar-gr... 43 0.058
FM992694_150(FM992694|pid:none) Candida dubliniensis CD36 chromo... 43 0.058
AK298598_1(AK298598|pid:none) Homo sapiens cDNA FLJ60783 complet... 42 0.075
CU928176_37(CU928176|pid:none) Zygosaccharomyces rouxii strain C... 42 0.13
BT001619_1(BT001619|pid:none) Drosophila melanogaster RE35250 fu... 41 0.17
(Q5KAM7) RecName: Full=Protein transport protein SEC23; &AE0173... 41 0.17
AP006852_154(AP006852|pid:none) Candida albicans genomic DNA, ch... 41 0.17
AY810439_1(AY810439|pid:none) Schistosoma japonicum SJCHGC06000 ... 41 0.17
FJ183252_1(FJ183252|pid:none) Capsella grandiflora isolate Sokra... 41 0.22
(Q6FSK3) RecName: Full=Protein transport protein SEC23-1; &CR38... 40 0.37
AM910987_85(AM910987|pid:none) Plasmodium knowlesi strain H chro... 40 0.37
AM441443_3(AM441443|pid:none) Vitis vinifera contig VV78X063352.... 39 0.64
CP000588_180(CP000588|pid:none) Ostreococcus lucimarinus CCE9901... 39 0.64
AM920428_320(AM920428|pid:none) Penicillium chrysogenum Wisconsi... 39 0.83
(Q2HB00) RecName: Full=Protein transport protein SEC23; 39 0.83
(A4R1J7) RecName: Full=Protein transport protein SEC23; 39 1.1
(Q0CUU1) RecName: Full=Protein transport protein sec23; 39 1.1
EU024653_1(EU024653|pid:none) Polistes sp. MD1 mitochondrion, pa... 39 1.1
X97065_1(X97065|pid:none) H.sapiens mRNA for Sec23B isoform, 245... 38 1.9
(Q2URM9) RecName: Full=Protein transport protein sec23; &AP0071... 38 1.9
AK146083_1(AK146083|pid:none) Mus musculus 11 days pregnant adul... 38 1.9
(Q15437) RecName: Full=Protein transport protein Sec23B; AltName... 38 1.9
AL121893_9(AL121893|pid:none) Human DNA sequence from clone RP11... 38 1.9
BC005464_1(BC005464|pid:none) Mus musculus SEC23B (S. cerevisiae... 38 1.9
AK155168_1(AK155168|pid:none) Mus musculus NOD-derived CD11c +ve... 38 1.9
(Q5R5G2) RecName: Full=Protein transport protein Sec23B; AltName... 38 1.9
(Q4PE39) RecName: Full=Protein transport protein SEC23; 38 1.9
(Q6FSI6) RecName: Full=Protein transport protein SEC23-2; &CR38... 37 3.2
AJ542488_1(AJ542488|pid:none) Plasmodium falciparum 3D7 cDNA for... 37 3.2
CP000976_193(CP000976|pid:none) Borrelia duttonii Ly, complete g... 37 4.1
AC104488_35(AC104488|pid:none) Trypanosoma brucei chromosome 5 c... 36 5.4
CP000896_1134(CP000896|pid:none) Acholeplasma laidlawii PG-8A, c... 36 5.4
(O74873) RecName: Full=Protein transport protein sec23-1; &AL03... 36 5.4
AF030154_15(AF030154|pid:none) Bovine adenovirus 3 complete geno... 36 7.0
AJ298666_1(AJ298666|pid:none) Tetraneura caerulescens mitochondr... 36 7.0
(Q5BGR9) RecName: Full=Protein transport protein sec23; 36 7.0
(Q1DY01) RecName: Full=Protein transport protein SEC23; 35 9.2
(Q0US25) RecName: Full=Protein transport protein SEC23; 35 9.2
>BC081230_1(BC081230|pid:none) Xenopus laevis hypothetical protein
LOC446945, mRNA (cDNA clone IMAGE:6937380), partial cds.
Length = 680
Score = 186 bits (471), Expect = 4e-45
Identities = 117/381 (30%), Positives = 181/381 (47%), Gaps = 32/381 (8%)
Frame = +2
Query: 491 VPSPTAILEQFN----NYIYKTNSDVSPPPSTVQQLVI-DQQNASPNFIRSTLYTIPENE 655
+PSP +++ +Y TN PP I DQ NASP +IR T Y P +
Sbjct: 257 IPSPIQVIDSDKINRAGQVYTTNVRGQVPPLVTTDCTIQDQGNASPRYIRCTTYCFPTSS 316
Query: 656 DTLNLIHIPFAIHVQPLAYNGISGEVPVIRTP--------GGPIQCKRCHSYINPFNPFT 811
D IP A+ ++PLA VP TP GPI+C RC +Y+ PF F
Sbjct: 317 DMAKQSQIPLAVVIKPLAV------VPQNETPIYLVNHGEAGPIRCNRCKAYMCPFMQFI 370
Query: 812 NGGKYFTCRFCEFENQVPQEYFSATLPNGQRTDYEQRPELQRGSYDFIKT-----EANAA 976
GG+ + C FC N+VP YF G+R D+ +RPEL GSY+++ T +
Sbjct: 371 EGGRRYHCGFCSCVNEVPTFYFQHLDHIGRRVDHYERPELSLGSYEYVATLDYCRKNKPP 430
Query: 977 QVPGYVFVIEISQVTINSGIVENVINAIRRIL-----NERYDSIPAKVGIITYDTEVHFW 1141
P ++F+I++S I +G+V + ++ +L E +S +VG +TY+ +HF+
Sbjct: 431 NPPAFIFMIDVSYNNIKNGVVRLICEELKVLLENLPREENAESSAIRVGFVTYNKVLHFY 490
Query: 1142 SFKPTYAYPQMKVLT-ADNVFVPVNDGFLVDYRESKQLMXXXXXXXXXXXXRPQPSNQPF 1318
+ A PQM V+T VF+P+ DGFLV+++ESK ++ S F
Sbjct: 491 NVNSNLAQPQMMVVTDTAEVFLPLLDGFLVNFKESKSVINNLLSQIPEMFADSNESETVF 550
Query: 1319 XXXXXXXXXXMSLEKIGGRVFTFNTTLPKG-SPGAIAKRVEKSIQPSPN-------GSQF 1474
+ + G++F F ++LP +PG + R ++ + + S
Sbjct: 551 APVIQAGMEALKASECAGKLFIFQSSLPTAEAPGKLRNRDDRKLINTEKEKTLFMPQSNL 610
Query: 1475 YKTVATECVAKNVSVDLFVIP 1537
Y+ +A ECVA VDLF+ P
Sbjct: 611 YENLAKECVANGCCVDLFLFP 631
Lambda K H
0.318 0.134 0.401
Gapped
Lambda K H
0.267 0.0410 0.140
Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Sequences: 3204285
Number of Hits to DB: 3,457,090,526
Number of extensions: 71373969
Number of successful extensions: 184098
Number of sequences better than 10.0: 155
Number of HSP's gapped: 183605
Number of HSP's successfully gapped: 251
Length of query: 771
Length of database: 1,040,966,779
Length adjustment: 137
Effective length of query: 634
Effective length of database: 601,979,734
Effective search space: 381655151356
Effective search space used: 381655151356
Neighboring words threshold: 12
Window for multiple hits: 40
X1: 16 ( 7.3 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 41 (21.7 bits)
S2: 32 (16.9 bits)
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