Dictyostelium discoideum cDNA Contig-U10935-1

Assembled

Chromosomal Location of Contig-U10935-1

Sequence Contig-U10935-1

ACAAACTACA AATACTTCAC AACCACCAAT GAACAATTAT CAACAATACT
CACCAAATCA ACCAAGCGGT GGTAATATGT ATCAACAACC ACAATCACAA
CAATCACAAC AACCACAACA ACCACAACAA TATCAATATA ATCAACAACC
ACCACAACAA CCATATGGAC AACAACAACA ACAACAACAA CAACAACAAC
AACAACAACA ACAACAACAA CAACAACCAC CACAACAACC ATATGGACAA
CAACCACAAC AACAACAACA ATGGAATAGT AATCCAGTAC CAGGTTTACA
AAATTTATCA CTTGGACCAA ATAACCAACA ACCACAACAA CAATATGGAC
AACCACAACA ACAACAATAT GGGCAACCAC CATTCGTTGG ACAACAACAA
CAACAACAAC AACAACCATG GCAACCACAA CAACCACAAC AACAACCAAA
TCAACAACAA ATTGAGGATA ATAGAATTAA TATGTCAAAA GTGCCAAGCC
CAACAGCAAT TTTAGAACAA TTTAATAATT ATATTTATAA GACCAATTCA
GATGTGTCAC CACCACCATC AACAGTTCAA CAATTAGTGA TTGATCAACA
AAATGCATCA CCAAATTTCA TTCGTTCAAC ATTGTATACC ATTCCAGAGA
ATGAGGATAC TCTTAATCTA ATTCATATTC CATTTGCAAT TCATGTTCAA
CCATTGGCAT ACAATGGTAT TTCAGGTGAG GTACCAGTGA TTCGTACACC
AGGTGGACCA ATTCAATGTA AACGTTGTCA CAGTTATATC AATCCATTCA
ATCCATTCAC CAATGGTGGT AAATATTTTA CTTGTCGTTT CTGTGAATTT
GAAAATCAAG TACCACAAGA ATACTTTAGT GCCACGCTTC CAAATGGTCA
ACGTACCGAT TACGAACAAA GACCTGAACT TCAAAGGGGT TCCTACGATT
TCATAAAGAC TGAAGCAAAT GCAGCTCAAG TACCGGGTTA TGTTTTCGTG
ATTGAAATTT CACAAGTTAC CATCAATAGT GGTATCGTCG AGAATGTAAT
CAATGCCATC AGAAGAATTC TCAATGAAAG ATATGATAGT ATACCAGCCA
AAGTTGGTAT CATCACCTAC GATACAGAGG TTCACTTTTG GTCATTCAAA
CCAACCTATG CCTATCCACA AATGAAAGTA TTGACAGCTG ACAATGTTTT
CGTACCAGTT AATGACGGTT TCCTCGTGGA TTATCGTGAG TCTAAACAAT
TGATGGATTT CTTTTTCGAT AATTTCAAAA CCTTCTTCAA ACGTCCACAA
CCATCGAATC AACCATTTGC ATTTGGTGCC GCTGTTCAAG CCGCTGCAAT
GTCATTGGAA AAGATTGGTG GTAGAGTTTT CACATTCAAT ACTACCCTTC
CAAAAGGTTC ACCTGGTGCT ATCGCTAAAC GTGTCGAAAA ATCAATTCAA
CCATCACCAA ACGGTTCACA ATTCTATAAG ACGGTAGCAA CTGAATGTGT
TGCAAAGAAT GTTTCAGTGG ATCTCTTTGT AATTCCAA-- --------TT
CGTTCAAATA CAGTTGATAA AGGTGTTGAT TTATTAGCAT CCTATAGAAA
GAATTGTGCA TCCGATAAGA AGGCAACTCA ATTGATCTTA CCAGAGGGTA
TTAAATTGAT GCCAATCTAT ATATTGTCAA TGATGAAAAC ACCATGTTTC
CGTCTTTCAC CAGATATCAG TCAAGATTTG CGTTATTTCT ATTTGAATTT
ATACACTTCA TCAGCACCTT CAAGAATTAT ACCATTGATT TATCCACGTA
CCTATCCAAT TCATAATTTA TTACCTGGCG ATGGTTATAA ACATCCAAAC
TATGATCACA TTGTATTACC ATCATTCATT AGATTATCGG CCGATCAAAT
CTCTCAAAAT GGTATTTACA TTCATGAAGA TGGTAGACAA ATTATGGTTT
GGATTCAACA ATTTGCTGCT ACCAATTATC TTCGTGATCT TTTCGGTATC
GAGAGTACCT TTGGTTATAC CAATAGTAAA TTATCACAAC TCTATCATTC
TTTAAATGGT CAAAACGAAT ATCATCAACG TATTGAAGCT ATCATCGCTT
CAATCACTCA ACTTCGTGGT TACAAAGATA GACCTGTCAT TTTCGTCGTT
CAAGGTGATC CTGTTGATGC TCATCTTAGA TTACAATTCC ATGAAGACAA
AGGTGTTGAT TCTGTCTCTT ACATTGATTT CCTTTGTCAA ATTCATAAAC
AAATTCAAAA TAAATTATCG TAAGGCAAAA GATTATCAAC AAACAGCTGC
GCTCTTTGAG GCAAA

Translated Amino Acid Sequence Contig-U10935-1

QTTNTSQPPMNNYQQYSPNQPSGGNMYQQPQSQQSQQPQQPQQYQYNQQPPQQPYGQQQQ
QQQQQQQQQQQQQQQPPQQPYGQQPQQQQQWNSNPVPGLQNLSLGPNNQQPQQQYGQPQQ
QQYGQPPFVGQQQQQQQQPWQPQQPQQQPNQQQIEDNRINMSKVPSPTAILEQFNNYIYK
TNSDVSPPPSTVQQLVIDQQNASPNFIRSTLYTIPENEDTLNLIHIPFAIHVQPLAYNGI
SGEVPVIRTPGGPIQCKRCHSYINPFNPFTNGGKYFTCRFCEFENQVPQEYFSATLPNGQ
RTDYEQRPELQRGSYDFIKTEANAAQVPGYVFVIEISQVTINSGIVENVINAIRRILNER
YDSIPAKVGIITYDTEVHFWSFKPTYAYPQMKVLTADNVFVPVNDGFLVDYRESKQLMDF
FFDNFKTFFKRPQPSNQPFAFGAAVQAAAMSLEKIGGRVFTFNTTLPKGSPGAIAKRVEK
SIQPSPNGSQFYKTVATECVAKNVSVDLFVIP---

---RSNTVDKGVDLLASYRKNCASDKKATQLILPEGIKLMPIYILSMMKTPCFRLSPDIS
QDLRYFYLNLYTSSAPSRIIPLIYPRTYPIHNLLPGDGYKHPNYDHIVLPSFIRLSADQI
SQNGIYIHEDGRQIMVWIQQFAATNYLRDLFGIESTFGYTNSKLSQLYHSLNGQNEYHQR
IEAIIASITQLRGYKDRPVIFVVQGDPVDAHLRLQFHEDKGVDSVSYIDFLCQIHKQIQN
KLS*gkrlstnscal*gk

Homology Contig-U10935-1 vs CSM-Contig

Sequences producing significant alignments:                        (bits)  Value


Contig-U10935-1 (Contig-U10935-1Q) /CSM_Contig/Conti...  3618  0.0
Contig-U12228-1 (Contig-U12228-1Q) /CSM_Contig/Conti...    40  0.011
Contig-U14167-1 (Contig-U14167-1Q) /CSM_Contig/Conti...    36  0.16
Contig-U13982-1 (Contig-U13982-1Q) /CSM_Contig/Conti...    36  0.16
Contig-U12288-1 (Contig-U12288-1Q) /CSM_Contig/Conti...    36  0.16
Contig-U11253-1 (Contig-U11253-1Q) /CSM_Contig/Conti...    36  0.16
Contig-U14387-1 (Contig-U14387-1Q) /CSM_Contig/Conti...    34  0.65
Contig-U14313-1 (Contig-U14313-1Q) /CSM_Contig/Conti...    34  0.65
Contig-U14076-1 (Contig-U14076-1Q) /CSM_Contig/Conti...    34  0.65
Contig-U13992-1 (Contig-U13992-1Q) /CSM_Contig/Conti...    34  0.65

Homology Contig-U10935-1 vs DNA

Sequences producing significant alignments:                  (bits) Value  N


(BJ354858) Dictyostelium discoideum cDNA clone:dda55a05, 3' ...  1485   0.0    1
(BJ437256) Dictyostelium discoideum cDNA clone:ddv33n14, 3' ...  1435   0.0    1
(BJ353406) Dictyostelium discoideum cDNA clone:dda50g03, 3' ...  1431   0.0    2
(BJ348227) Dictyostelium discoideum cDNA clone:dda32g14, 3' ...  1417   0.0    1
(BJ343995) Dictyostelium discoideum cDNA clone:dda17i20, 3' ...  1338   0.0    1
(BJ421864) Dictyostelium discoideum cDNA clone:ddv44h04, 5' ...  1332   0.0    1
(BJ443492) Dictyostelium discoideum cDNA clone:ddv53h02, 3' ...  1304   0.0    2
(BJ446178) Dictyostelium discoideum cDNA clone:ddv61l21, 3' ...  1261   0.0    2
(BJ352675) Dictyostelium discoideum cDNA clone:dda47e13, 3' ...  1255   0.0    2
(BJ348643) Dictyostelium discoideum cDNA clone:dda33j19, 3' ...  1251   0.0    2

Homology Contig-U10935-1 vs Protein

Sequences producing significant alignments:                      (bits) Value


BC081230_1(BC081230|pid:none) Xenopus laevis hypothetical protei...   186   4e-45
BC067020_1(BC067020|pid:none) Mus musculus Sec24 related gene fa...   185   7e-45
AB383977_1(AB383977|pid:none) Synthetic construct DNA, clone: pF...   184   1e-44
AK001390_1(AK001390|pid:none) Homo sapiens cDNA FLJ10528 fis, cl...   184   1e-44
AK291765_1(AK291765|pid:none) Homo sapiens cDNA FLJ78676 complet...   184   1e-44
BC035761_1(BC035761|pid:none) Homo sapiens SEC24 family, member ...   184   1e-44
BC082352_1(BC082352|pid:none) Xenopus laevis MGC80413 protein, m...   184   2e-44
AK299826_1(AK299826|pid:none) Homo sapiens cDNA FLJ60345 complet...   182   4e-44
CU633865_136(CU633865|pid:none) Podospora anserina genomic DNA c...   182   5e-44
CR860827_1(CR860827|pid:none) Pongo abelii mRNA; cDNA DKFZp469D1...   182   6e-44