Homology Contig-U10935-1 vs DNA
Query= Contig-U10935-1 (Contig-U10935-1Q) /CSM_Contig/Contig-U10935-1Q.Seq.d
(2315 letters)
Database: ddbj_A
108,600,042 sequences; 106,710,029,556 total letters
Searching..................................................done
Score E
Sequences producing significant alignments: (bits) Value N
(BJ354858) Dictyostelium discoideum cDNA clone:dda55a05, 3' ... 1485 0.0 1
(BJ437256) Dictyostelium discoideum cDNA clone:ddv33n14, 3' ... 1435 0.0 1
(BJ353406) Dictyostelium discoideum cDNA clone:dda50g03, 3' ... 1431 0.0 2
(BJ348227) Dictyostelium discoideum cDNA clone:dda32g14, 3' ... 1417 0.0 1
(BJ343995) Dictyostelium discoideum cDNA clone:dda17i20, 3' ... 1338 0.0 1
(BJ421864) Dictyostelium discoideum cDNA clone:ddv44h04, 5' ... 1332 0.0 1
(BJ443492) Dictyostelium discoideum cDNA clone:ddv53h02, 3' ... 1304 0.0 2
(BJ446178) Dictyostelium discoideum cDNA clone:ddv61l21, 3' ... 1261 0.0 2
(BJ352675) Dictyostelium discoideum cDNA clone:dda47e13, 3' ... 1255 0.0 2
(BJ348643) Dictyostelium discoideum cDNA clone:dda33j19, 3' ... 1251 0.0 2
(BJ354271) Dictyostelium discoideum cDNA clone:dda53h04, 3' ... 1247 0.0 2
(BJ352954) Dictyostelium discoideum cDNA clone:dda48a18, 3' ... 1185 0.0 3
(BJ326742) Dictyostelium discoideum cDNA clone:dda17i20, 5' ... 1112 0.0 1
(BJ378688) Dictyostelium discoideum cDNA clone:ddc32d13, 3' ... 1108 0.0 1
(BJ335403) Dictyostelium discoideum cDNA clone:dda50g03, 5' ... 910 0.0 2
(BJ364667) Dictyostelium discoideum cDNA clone:ddc32d13, 5' ... 981 0.0 1
(BJ404087) Dictyostelium discoideum cDNA clone:dds27d12, 3' ... 831 0.0 1
(BJ418694) Dictyostelium discoideum cDNA clone:ddv33n14, 5' ... 745 0.0 2
(BJ353330) Dictyostelium discoideum cDNA clone:dda49d19, 3' ... 571 e-158 1
(BJ392337) Dictyostelium discoideum cDNA clone:dds27d12, 5' ... 311 e-143 3
(BJ334713) Dictyostelium discoideum cDNA clone:dda47e13, 5' ... 159 2e-56 2
(BJ331094) Dictyostelium discoideum cDNA clone:dda33j19, 5' ... 96 3e-27 2
(FF134626) CJAH-aad41h02.b1 Caenorhabditis_japonica_CJAH1_ES... 52 0.10 1
(AP004559) Oryza sativa Japonica Group genomic DNA, chromoso... 38 0.88 2
(AC161406) Medicago truncatula chromosome 2 BAC clone mth2-8... 48 1.6 1
(DU706948) Bst039475 lambda03 Boechera stricta genomic clone... 48 1.6 1
(AY645386) Uncultured bacterium STB029 16S ribosomal RNA gen... 48 1.6 1
(AL662960) Oryza sativa genomic DNA, chromosome 4, BAC clone... 32 3.1 2
(DE968540) Macropus eugenii DNA, BAC clone: MEB1-172L05_F, 5... 44 3.2 2
(DE959975) Macropus eugenii DNA, BAC clone: MEB1-161C03_R, 3... 44 3.3 2
(DE891231) Macropus eugenii DNA, BAC clone: MEB1-068A07_R, 3... 44 3.4 2
(CW938458) TcB18.3_B04_SP6 Tribolium BAC library Tribolium c... 32 4.1 2
(AC189375) Brassica rapa subsp. pekinensis clone KBrB048L11,... 46 6.4 1
(AX696301) Sequence 3 from Patent WO02057432. 46 6.4 1
(AR406002) Sequence 3 from patent US 6630334. 46 6.4 1
(AC109782) Homo sapiens 3 BAC RP11-346M10 (Roswell Park Canc... 46 6.4 1
(AC182432) Bos taurus clone CH240-489K13, WORKING DRAFT SEQU... 46 6.4 1
(ER098558) 1095521888643 Global-Ocean-Sampling_GS-33-01-01-1... 46 6.4 1
(EK154829) 1095456070402 Global-Ocean-Sampling_GS-31-01-01-1... 46 6.4 1
(EJ631811) 1092963593115 Global-Ocean-Sampling_GS-29-01-01-1... 46 6.4 1
(ED753698) GM_WBb0121E13.f GM_WBb Glycine max genomic clone ... 46 6.4 1
(ED474599) AUAC-aaw17a08.g1 Ascaris suum whole genome shotgu... 46 6.4 1
(ED151473) AUAC-aaa72h01.b1 Ascaris suum whole genome shotgu... 46 6.4 1
(ED088874) AUAC-aai72h10.b1 Ascaris suum whole genome shotgu... 46 6.4 1
(CU081647) Equus caballus GSS, BAC clone CH241-175B1, T7 end... 46 6.4 1
(CU081467) Equus caballus GSS, BAC clone CH241-175A1, T7 end... 46 6.4 1
(CG924635) MBENJ22TR mth2 Medicago truncatula genomic clone ... 46 6.4 1
(AA145290) mr09d02.r1 Soares mouse 3NbMS Mus musculus cDNA c... 40 8.8 2
>(BJ354858) Dictyostelium discoideum cDNA clone:dda55a05, 3' end,
single read.
Length = 752
Score = 1485 bits (749), Expect = 0.0
Identities = 751/752 (99%)
Strand = Plus / Minus
Query: 1549 ttcgttcaaatacagttgataaaggtgttgatttattagcatcctatagaaagaattgtg 1608
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 752 ttcgttcaaatacagttgataaaggtgttgatttattagcatcctatagaaagaattgtg 693
Query: 1609 catccgataagaaggcaactcaattgatcttaccagagggtattaaattgatgccaatct 1668
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 692 catccgataagaaggcaactcaattgatcttaccagagggtattaaattgatgccaatct 633
Query: 1669 atatattgtcaatgatgaaaacaccatgtttccgtctttcaccagatatcagtcaagatt 1728
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 632 atatattgtcaatgatgaaaacaccatgtttccgtctttcaccagatatcagtcaagatt 573
Query: 1729 tgcgttatttctatttgaatttatacacttcatcagcaccttcaagaattataccattga 1788
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 572 tgcgttatttctatttgaatttatacacttcatcagcaccttcaagaattataccattga 513
Query: 1789 tttatccacgtacctatccaattcataatttattacctggcgatggttataaacatccaa 1848
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 512 tttatccacgtacctatccaattcataatttattacctggcgatggttataaacatccaa 453
Query: 1849 actatgatcacattgtattaccatcattcattagattatcggccgatcaaatctctcaaa 1908
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 452 actatgatcacattgtattaccatcattcattagattatcggccgatcaaatctctcaaa 393
Query: 1909 atggtatttacattcatgaagatggtagacaaattatggtttggattcaacaatttgctg 1968
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 392 atggtatttacattcatgaagatggtagacaaattatggtttggattcaacaatttgctg 333
Query: 1969 ctaccaattatcttcgtgatcttttcggtatcgagagtacctttggttataccaatagta 2028
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 332 ctaccaattatcttcgtgatcttttcggtatcgagagtacctttggttataccaatagta 273
Query: 2029 aattatcacaactctatcattctttaaatggtcaaaacgaatatcatcaacgtattgaag 2088
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 272 aattatcacaactctatcattctttaaatggtcaaaacgaatatcatcaacgtattgaag 213
Query: 2089 ctatcatcgcttcaatcactcaacttcgtggttacaaagatagacctgtcattttcgtcg 2148
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 212 ctatcatcgcttcaatcactcaacttcgtggttacaaagatagacctgtcattttcgtcg 153
Query: 2149 ttcaaggtgatcctgttgatgctcatcttagattacaattccatgaagacaaaggtgttg 2208
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 152 ttcaaggtgatcctgttgatgctcatcttagattacaattccatgaagacaaaggtgttg 93
Query: 2209 attctgtctcttacattgatttcctttgtcaaattcataaacaaattcaaaataaattat 2268
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 92 attctgtctcttacattgatttcctttgtcaaattcataaacaaattcaaaataaattat 33
Query: 2269 cgtaaggcaaaagattatcaacaaacagctgc 2300
|||||||||||| |||||||||||||||||||
Sbjct: 32 cgtaaggcaaaanattatcaacaaacagctgc 1
Lambda K H
1.37 0.711 1.31
Matrix: blastn matrix:1 -3
Number of Sequences: 108600042
Number of Hits to DB: 2,294,826,611
Number of extensions: 128451428
Number of successful extensions: 10010345
Number of sequences better than 10.0: 48
Length of query: 2315
Length of database: 106,710,029,556
Length adjustment: 25
Effective length of query: 2290
Effective length of database: 103,995,028,506
Effective search space: 238148615278740
Effective search space used: 238148615278740
X1: 11 (21.8 bits)
S2: 23 (46.1 bits)
Dictyostelium discoideum cDNA Project Home