Dictyostelium discoideum cDNA Contig-U10870-1

Assembled

Chromosomal Location of Contig-U10870-1

NO HIT FOUND.

Sequence Contig-U10870-1

TATTATTTAT TTTAAATTTT TAAAATAATT TTCATTGGAA AAAAAAAACC
ATACAATGAC CAAAGGAGGT AAAAAACCAA CAGCTCATAA AAAGGTTGTA
TCAACATTTA CAATTCAAGA GCCAGAAGAA TTCAAAGATA ACACTAGAGA
ATTAAAAGCT GAAGCTGAAA GAGTTAGACA AGAAGGATTT AGAAAGATTA
AAGAAGAGAA ATTACAAAAG GAACAAGCTT TAATCAGAGA AAAGCAAGAG
GCTGAAGCAA AGAAAAAATT AGAAGAACAA GAGAAATTAG AACAAGAACA
AAAGAAAAAA CAACAAGAAG AAGAGGATAA AAAAAGAAAA CAACAAGAAG
AAGAGGATAA AATAAAACAA CAACAATTGA AAAAAGAGGA AAAAGAAAAA
GAAATTAGAA GAAGAAGAAG AAAAGAAGAA AGCTGCTTCT GAGCAAGCTG
AACAAAAACA AGTTGCTGAA GATTCTGATA AAAAGAAAGC AGACGAAGCA
GAAATTCGTC CATTATCTCA TCCAACCCTT TCAAGACCAT CTAAAAAATC
ATCATCGTCA TTAAAGTTAA ATAGAGTTGA AACTGAATCA GAGGTCGAAG
CATCAAAATC TGAAGAAACC AAAGAAGAGG AAAAACCAGA ACCAGAAGAG
GAAAAACCAA AAGTAGAATA TAAACCTGAT TTTAAACCAG TTGGAGGTAT
TGATATTTTT GGTGGTGCCA AAATCAATCC AGCCGAAGTT GTTTTAAAGA
AAACTACCTC TTCAAGTAAT ATCATTGAAC ATACACCAGC ACCAGCACCA
GAAGAACAAG GTACATTTAA TTTCCGTTCA GTTTTAAAGA ATTCAAAATC
CAGTGAAAAA TTATCCGAAT TTGCAAATGG CGGATCTACC ACCTCCTCAA
CAACTACTAC ACCTTCAACA GGTACTCCAG TTAAACCAAC CTTATCAAAA
TCACCATCTG TTGTAAATAA TAAATCAACC ACCTCAATTC CAATTCCAAC
TTCCTCACCA GTTATTTCCC CAGCTGCTGT TACCTCTATG CCATCAGAAG
CTGTTGGAAC TTATACTTAT GATGAATTAA AGAATTTCAA AACCAATGGT
ATCAATGTTG ATCCAAGTAA ATTAGAAATC TATTTAAGTG ATGAAGAATT
TACAAAGGTT TTAGGTATGT CCCGTACTGA ATACATTAAA TTACCAGCAG
GAAACAAAAA AATAAGAAAC AAGATGCTAA ACTCTTTTAA ATTA------
----TAAAGA AACAAATGGT AAAAAAGTAG TAAAAAGAAA ACATAGTACT
CAATTAAGTG GATTTGAAAT TAGTGAACCA TCAAGTTTCG ATGATGAACA
ATTCAAAATC GATAATGAGG ATGTTATTAG ATTAAGAACA AAATTCATTA
AAGTTACAAA ACCAAAGAAA AATAAAAAGA ACGCAAGTAA ATCTGGTTCA
CCAGCAATCA TTTCATCAAA TACTACTTCA GAATCTGTAA CACCACAAAA
TTTTGCTCAA GAAAATTCTC CACCAACTAC AACTCCAGCC ACAACTCAAA
CTCAAGTAAC TGAAAAACCA AAACAACAAG AAGAAGAAAA AGAGGAAGGA
GAAAAAGAAG AGCCAAAACC AGTTGTTCCA GAAATTAAAA AAATTGGAAT
TAAATCATCA CCAAAAGCTG AACAAAAACC ACATTATACT ATTCCAAAAA
AGAATAAACA ACAACAACAA CCACCAAAAC CAACAACCAA TGAAGCTAAA
CCAGCTGGTG AAACTAAAAA ATCAACTGGT AAAAAATCAC CAAAACAATC
AATAACTAAA AATAAATCTG CTACTTTCAC AATTATTGAA CCATCATTTG
GTATTCAAGC TCCCTCATCA AATACTACAA CCGCTACTCC AGTTGAAGAT
TCATCTTCAA AAACTGTTGA TTCAACTACT ACAACAACCA CAACAACCTC
TACTGCAACC AAAACACCAG CTAAACCAAC TCCAACTCAA TCTAAAAAGA
AACAAAATAA AAAGAAACCA TCAACTACAA ATAAATCAGA TGATGATATT
GAGGGACTTT TAAAACAAAT TAATGATCCA AAACAAAGAA AAGTCAAACA
ACCAACCACT ACCGCCACTC CAGTAGTTTC CAAAGAAGAT GAAGCTAAAA
AACAAAAAGC TGCACAAGAA TCTGCTGAGA AAAAGAAATT GACTGATCAA
AACAAAAAGG AAGCTCAAGA ACAAGAAAAG TTAAGAGTTG CTGAAGCTAA
AAAAGTTGCT GATGCAAAAA AAGCTGCCGA TGCTGAGGAA TCAAAGAAAG
CTGCCGATGC CAAGAAAGCT GCTGATGCAG AAGCAAAGAA AGCTGCAGAA
GCAAAGAAAG CTGCTGATGC AGAAGCAAAG AAAGCTGCTG ATGCCAAGAA
AGCTGCTGCT GATGAAGAAG AAGCAAAGAA AGCTGCTGAT GCCAAAAAAG
CTGCCGATGC CAAGAAGGCT GCTGATGAGG AAGAAGCAAA GAAAGCTGCT
GATGCCAAGA AAGTTGCTGA TGCAGAAGCA AAGAAAGCTG CTGATGCTAA
GAAAGCTGCT GATGAAGAAG AAGCAAAGAA AGCTGCTGAT GCAAAGAAAG
CTGCTGAAGA AGAAGAAGCA AAGAAAGCTG CTGATATCAA GAAAGCTGCA
GAAGATGCCA AAAAAGCAGA AGATGCCAAA AAAGCAGAAG ATGCCAAAAA
AGCAGAGGAG GATAGATTAG AAGCAGAGGC AGAAAAGAAA AGATTAGCAG
AAGAACAAGC AAAGAAAGAG GCAGATGCAA AGAAAGCAGA GGAGGATAGA
TTAGCAGCCG AAGCAGAAAA GAAAAGATTA GAAGGGGAAC AAGCAAAGAG
AGCAGAAGAA GATAGATTAG CAGCTGAAGC AGAAAAGCAA AAGATTAGCA
GATGAAGCAG AAAAGCAAAG ATTCAACTAC TACAACAACC ACAACAACCT
CTACTGCAAC CAAAACACCA GCTAAACCAA CTCCAA

Translated Amino Acid Sequence Contig-U10870-1

lfilnf*nnfhwkkktiq*pkevknqqlikrlyqhlqfksqknskitlen*klklkeldk
kdlerlkkrnykrnkl*sekskrlkqrkn*knkrn*nknkrknnkkkrikkennkkkrik
*nnnn*KKRKKKKKLEEEEEKKKAASEQAEQKQVAEDSDKKKADEAEIRPLSHPTLSRPS
KKSSSSLKLNRVETESEVEASKSEETKEEEKPEPEEEKPKVEYKPDFKPVGGIDIFGGAK
INPAEVVLKKTTSSSNIIEHTPAPAPEEQGTFNFRSVLKNSKSSEKLSEFANGGSTTSST
TTTPSTGTPVKPTLSKSPSVVNNKSTTSIPIPTSSPVISPAAVTSMPSEAVGTYTYDELK
NFKTNGINVDPSKLEIYLSDEEFTKVLGMSRTEYIKLPAGNKKIRNKMLNSFKL---

---KETNGKKVVKRKHSTQLSGFEISEPSSFDDEQFKIDNEDVIRLRTKFIKVTKPKKNK
KNASKSGSPAIISSNTTSESVTPQNFAQENSPPTTTPATTQTQVTEKPKQQEEEKEEGEK
EEPKPVVPEIKKIGIKSSPKAEQKPHYTIPKKNKQQQQPPKPTTNEAKPAGETKKSTGKK
SPKQSITKNKSATFTIIEPSFGIQAPSSNTTTATPVEDSSSKTVDSTTTTTTTTSTATKT
PAKPTPTQSKKKQNKKKPSTTNKSDDDIEGLLKQINDPKQRKVKQPTTTATPVVSKEDEA
KKQKAAQESAEKKKLTDQNKKEAQEQEKLRVAEAKKVADAKKAADAEESKKAADAKKAAD
AEAKKAAEAKKAADAEAKKAADAKKAAADEEEAKKAADAKKAADAKKAADEEEAKKAADA
KKVADAEAKKAADAKKAADEEEAKKAADAKKAAEEEEAKKAADIKKAAEDAKKAEDAKKA
EDAKKAEEDRLEAEAEKKRLAEEQAKKEADAKKAEEDRLAAEAEKKRLEGEQAKRAEEDR
LAAEAEKQKISR*srkakiqllqqpqqpllqpkhqlnqlq

Homology Contig-U10870-1 vs CSM-Contig

Sequences producing significant alignments:                        (bits)  Value


Contig-U10870-1 (Contig-U10870-1Q) /CSM_Contig/Conti...  1568  0.0
Contig-U11567-1 (Contig-U11567-1Q) /CSM_Contig/Conti...    46  2e-04
Contig-U01883-1 (Contig-U01883-1Q) /CSM_Contig/Conti...    46  2e-04
Contig-U12013-1 (Contig-U12013-1Q) /CSM_Contig/Conti...    44  9e-04
Contig-U14400-1 (Contig-U14400-1Q) /CSM_Contig/Conti...    42  0.003
Contig-U08720-1 (Contig-U08720-1Q) /CSM_Contig/Conti...    42  0.003
Contig-U08146-1 (Contig-U08146-1Q) /CSM_Contig/Conti...    42  0.003
Contig-U03598-1 (Contig-U03598-1Q) /CSM_Contig/Conti...    42  0.003
Contig-U13615-1 (Contig-U13615-1Q) /CSM_Contig/Conti...    40  0.014
Contig-U13605-1 (Contig-U13605-1Q) /CSM_Contig/Conti...    40  0.014

Homology Contig-U10870-1 vs DNA

Sequences producing significant alignments:                  (bits) Value  N


(BJ353421) Dictyostelium discoideum cDNA clone:dda50j02, 3' ...   993   0.0    4
(BJ350768) Dictyostelium discoideum cDNA clone:dda40p20, 3' ...  1049   0.0    2
(BJ350883) Dictyostelium discoideum cDNA clone:dda41g08, 3' ...   844   0.0    2
(BJ326899) Dictyostelium discoideum cDNA clone:dda18n10, 5' ...   371   0.0    2
(BJ411837) Dictyostelium discoideum cDNA clone:ddv6b06, 5' e...   256   e-177  7
(BJ332826) Dictyostelium discoideum cDNA clone:dda40p20, 5' ...   359   e-109  2
(BJ323747) Dictyostelium discoideum cDNA clone:dda12f05, 5' ...   343   e-105  2
(BJ335412) Dictyostelium discoideum cDNA clone:dda50j02, 5' ...   198   e-105  4
(BJ350762) Dictyostelium discoideum cDNA clone:dda40o20, 3' ...   325   e-104  4
(BJ333056) Dictyostelium discoideum cDNA clone:dda41g08, 5' ...   206   4e-48  1

Homology Contig-U10870-1 vs Protein

Sequences producing significant alignments:                      (bits) Value


AJ427856_1(AJ427856|pid:none) Dictyostelium discoideum ORF encod...    47   0.005
(Q8WQ85) RecName: Full=Villidin;                                       47   0.005
(Q54K81) RecName: Full=Talin-B;                                        44   0.045
AB023655_1(AB023655|pid:none) Dictyostelium discoideum talB mRNA...    44   0.045
AF118397_1(AF118397|pid:none) Entamoeba histolytica actin-bindin...    44   0.045
AJ577853_1(AJ577853|pid:none) Nicotiana tabacum partial mRNA for...    43   0.059
AM474513_1(AM474513|pid:none) Vitis vinifera contig VV78X109071....    42   0.10
AY380816_1(AY380816|pid:none) Mustela putorius furo smooth muscl...    42   0.17
AF051850_1(AF051850|pid:none) Homo sapiens supervillin mRNA, com...    42   0.17
AL158167_3(AL158167|pid:none) Human DNA sequence from clone RP11...    42   0.17