Dictyostelium discoideum cDNA Contig-U10800-1

Assembled

Chromosomal Location of Contig-U10800-1

Sequence Contig-U10800-1

AAAGAAAAAT TTAAATTAGT TATTTATAAT TACAAAAAGT ATAAAAGAAT
AATTTTAAAT TAAAATTAAA TAATTAAAAT TAAATATAAA TATATTCATG
AAGGCCATAG TTTTAATTAT TTTTATTTTA TTAATCAATA ATCAAATTGT
AAAAACTTGG GATCAAAATG ATGTTAAACA ATTTTTTAAC AATTATCCAT
TTGGTATTAA ATCTAGTAGT GGATTTTATT ATGATACTCA AGTTTCAACA
CTGAATGGAA CAATTTATGG ATTTACAAAG AATGGATTTG TTGATTTTCC
AGAGAATCCA GGATTTGAAG AGTCAGGATT TTATTTAGAC CAATCAGTTG
ATATGGTTGA AGATAGATTG GGAGCAGATG GTAGACCAGT TTATAAAAAT
GGTAATGAAC CATTCATTGT TACAAATAAG GAAACTGGTA AACAATTTAC
ATTGGCACAT AATTCATCAA CATTTTATGA TTGGTTTCAT TCAAGTCCAT
GTGTGAATTA TCCATTAAAT GGTAGTATAT GGATTACAAA GAATGCTTTA
CAAGGTGTTG CATTTAAACC AACAAACGAC GTTTATCCAT ACGATATCGG
AACTCAAGAT AATCAATTAC CCTATTTCCA TCATTCTACT TTCTCTTTAA
ATTTTTATCT TCG------- ---ATTATCA ATTGATGGTA GTGTCTCAAG
CGGTAGTGGT TCCAATGACG ATCCAACTTG TATTTTANAA CCAATTGACT
GTGATGATAA TGATGAATGT ACCGTTGATG AATGTTCAAT AACAAGTGGA
TGTAAACATA CGGTTTGTCC AAATTTAGAT AAATCTGGTA AAACTGAAAT
TAAATGTGTA AATGGAAAAT GCCAAACACG TGTTAAATCA CCTTGTGAAT
TGATGACTTG TCCAAATGAT ACTATTTGCA TTGAAAATTA TAATAACACT
AAAAACTTGA CAATTTGTTT ACCAATTGAA TGTTCCATAA ATAATTGTGA
TGATGGTAAT GGGTGTACTA TCGATTCTTG TAATTTCCAA ACAGGATTTT
GTGATCATTT ACTTTGCCCA AACAAATATT TGGATCCAAT TACAAATCAT
ACAACAATTC CAATCTGTGA AAATAATAAA TGTGTAAACA AAACTCTCTC
AAATTGTGAA TATTTTAAAT GCGATCATCC AAATGAAATT TGCATAGAAG
AGAAAATAAC TCTTGCTCCA AAATGTGTTC ATTTCGATAG TGGTTGTTTA
TCTTGTTCTG ATTTAAATTG CCAATCATTA ACTTCTCCAA ATTCAAGATG
TAAATATATT GAAATGGATA ATCAAAAATT ACGTTGTAAA GGTTCGGTTG
GTTCCTGNTG GCCCTANTTA CCNACCNGNT ATTAAAAAAA AAAATAAAAG
TTAAAAAAAT AAAAAAAAAA ATAAAAAAAA AATAAACTAA AATAAAAAAA
TT

Translated Amino Acid Sequence Contig-U10800-1

kknln*lfiitksike*f*ikik*LKLNINIFMKAIVLIIFILLINNQIVKTWDQNDVKQ
FFNNYPFGIKSSSGFYYDTQVSTLNGTIYGFTKNGFVDFPENPGFEESGFYLDQSVDMVE
DRLGADGRPVYKNGNEPFIVTNKETGKQFTLAHNSSTFYDWFHSSPCVNYPLNGSIWITK
NALQGVAFKPTNDVYPYDIGTQDNQLPYFHHSTFSLNFYL---

---LSIDGSVSSGSGSNDDPTCILXPIDCDDNDECTVDECSITSGCKHTVCPNLDKSGKT
EIKCVNGKCQTRVKSPCELMTCPNDTICIENYNNTKNLTICLPIECSINNCDDGNGCTID
SCNFQTGFCDHLLCPNKYLDPITNHTTIPICENNKCVNKTLSNCEYFKCDHPNEICIEEK
ITLAPKCVHFDSGCLSCSDLNCQSLTSPNSRCKYIEMDNQKLRCKGSVGSXWPXLPTXY*
kkk*klkk*kkk*kknklk*kn

Homology Contig-U10800-1 vs CSM-Contig

Sequences producing significant alignments:                        (bits)  Value


Contig-U10800-1 (Contig-U10800-1Q) /CSM_Contig/Conti...  2456  0.0
Contig-U00789-1 (Contig-U00789-1Q) /CSM_Contig/Conti...   230  3e-60
Contig-U12151-1 (Contig-U12151-1Q) /CSM_Contig/Conti...    40  0.007
Contig-U05547-1 (Contig-U05547-1Q) /CSM_Contig/Conti...    40  0.007
Contig-U04421-1 (Contig-U04421-1Q) /CSM_Contig/Conti...    40  0.007
Contig-U12653-1 (Contig-U12653-1Q) /CSM_Contig/Conti...    38  0.026
Contig-U11722-1 (Contig-U11722-1Q) /CSM_Contig/Conti...    38  0.026
Contig-U11652-1 (Contig-U11652-1Q) /CSM_Contig/Conti...    38  0.026
Contig-U11236-1 (Contig-U11236-1Q) /CSM_Contig/Conti...    38  0.026
Contig-U11176-1 (Contig-U11176-1Q) /CSM_Contig/Conti...    38  0.026

Homology Contig-U10800-1 vs DNA

Sequences producing significant alignments:                  (bits) Value  N


(AF318287) Dictyostelium discoideum putative calmodulin-bind...  1348   0.0    1
(BJ372275) Dictyostelium discoideum cDNA clone:ddc11n24, 3' ...  1277   0.0    1
(BJ377425) Dictyostelium discoideum cDNA clone:ddc24c18, 3' ...  1150   0.0    1
(BJ363295) Dictyostelium discoideum cDNA clone:ddc25o21, 5' ...  1116   0.0    1
(BJ361582) Dictyostelium discoideum cDNA clone:ddc17h20, 5' ...  1114   0.0    1
(BJ374007) Dictyostelium discoideum cDNA clone:ddc5g22, 3' e...  1098   0.0    1
(BJ360832) Dictyostelium discoideum cDNA clone:ddc8n02, 5' e...  1094   0.0    1
(BJ324734) Dictyostelium discoideum cDNA clone:dda7p17, 5' e...  1084   0.0    1
(BJ359561) Dictyostelium discoideum cDNA clone:ddc15j07, 5' ...  1082   0.0    1
(BJ373019) Dictyostelium discoideum cDNA clone:ddc15j07, 3' ...  1080   0.0    1

Homology Contig-U10800-1 vs Protein

Sequences producing significant alignments:                      (bits) Value


A26838(A26838)prestalk protein precursor - slime mold (Dictyoste...    88   7e-16
(P11976) RecName: Full=Prestalk protein; AltName: Full=Extracell...    88   9e-16
A27020(A27020)DIF-induced prestalk pDd63 protein precursor - sli...    82   4e-14
(Q54C32) RecName: Full=Protein psiQ; Flags: Precursor;                 80   1e-13
(Q54C31) RecName: Full=Protein psiR; Flags: Precursor;                 75   5e-12
(Q54CH8) RecName: Full=Protein psiN; Flags: Precursor;                 75   8e-12
AC116984_103(AC116984|pid:none) Dictyostelium discoideum chromos...    75   8e-12
S44208(S44208) extracellular matrix protein B - Dictyostelium mi...    74   1e-11
(Q54G85) RecName: Full=Protein psiJ; Flags: Precursor;                 68   1e-09
AC117072_61(AC117072|pid:none) Dictyostelium discoideum chromoso...    67   2e-09