<Clone: Contig-U10709-1> <SEQ> <Translated> <CONTIG> <DNA> <Protein> <PSORT> <MOTIF>

Dictyostelium discoideum cDNA Contig-U10709-1

Dictyostelium discoideum cDNA Project Home

Assembled

Chromosomal Location of Contig-U10709-1

< more Chromosomal info >

Chromosome Number 4
Length 5430582
Start Poin 757,921
End Point 759,149
Strand PLUS

Sequence Contig-U10709-1

ATTAGTAACA CAGACATTGG TAACACGAAT TTATTACCAC CATCACCATT
TGCAGTACCA TTGATTCAAT TGTTCTATTC ACCAGATTTA CACGAATCAG
TATCACGTTC AATGAAAGAG ACAATCGCCA ACTTTTGTGT GTTTTTACGT
GGTTCAGTGG AATTTATCGA GTCGTTCATA TCATTGATGT TACCAATTTA
CAAGAAATGT ATCATCGAAT GTAAGAAACA TATCCTTTTA TCATCATTTA
GTATATTTTC ATCGACTGCA GTGGGTCCAT TACTATTGTC AACCAACGCC
GCTGAGATCG TGATGGATAC TATCACAGAG TATTTTAGTA AACATTTTTA
TATTAGAGAT GAATTCATTT CACCATCATC ATCAGATTCA AAGTCAAAGA
AAAAGAGATC ATTACGTTTC AAAGATCCTT ACCTTTATCC ACAATTTAAA
CAATTGACAA AATTACATGA AACACCTTTA GTCACCCAAG TATTACGTAC
CGATATCTCT TTTATACTTG GTAATCAACC CGTTGCAAAG AGTGTCGTTG
AGTCTAAACA TCTTCTTTCC CTTTGGATCA ATATGATTGC AATCGCTCAA
GGTATGAATC CAAATGTTA- ---------A TGACATTACA AACTGTCGTT
TATCAAAGTT TACATTATCA AAAGTATTTC GATTTAGATA TTTTCTTAAT
TCAAATCGGT GCTGCAATTA TGGGTTCAAA TCAATTCATT CAACATGCTA
TCAATATCTA TAATCTTGAA GATTGGTTTG AAATTGAACC TTTTAATGGT
TCATTAAATA AATCAACTGA GGGCACTCCT ACTACCACCT CATCACAACC
ACCTTCAACT CCTTCAAAAC AAACTTCATT ACGTAATAGT GCTGGTACTG
TACCAACCAC TCCTTCTCAA TCTTCTTCAA CTATAGTTCC AACTTTAGAT
ACAATTGGTG AAACTACCAC TACTACTACC ACCACAGCAA CAACTACCAC
CACCACTGAT GGTATAATTA CAGAACCAAA AAAAGAAACT AAAGAAGAGA
AAAAAATTAG AAAAGAAAAA CAAAAGATTC AAGAAGATTT ACAAAAGAGA
AAAGGTTTAG CAGAGGATTT CTTACAAAAT GTTATTATGT TTTCAACAAA
TAAATTAATG TGTGGTATGA CAGAGGATCA AGTAATTAGA AAGGAGTTAA
TTCATAGATT ATGTTTAGGT GATAATACTC ATAGTCAA

Translated Amino Acid Sequence Contig-U10709-1

<All Frames> 
ISNTDIGNTNLLPPSPFAVPLIQLFYSPDLHESVSRSMKETIANFCVFLRGSVEFIESFI
SLMLPIYKKCIIECKKHILLSSFSIFSSTAVGPLLLSTNAAEIVMDTITEYFSKHFYIRD
EFISPSSSDSKSKKKRSLRFKDPYLYPQFKQLTKLHETPLVTQVLRTDISFILGNQPVAK
SVVESKHLLSLWINMIAIAQGMNPNV---

---MTLQTVVYQSLHYQKYFDLDIFLIQIGAAIMGSNQFIQHAINIYNLEDWFEIEPFNG
SLNKSTEGTPTTTSSQPPSTPSKQTSLRNSAGTVPTTPSQSSSTIVPTLDTIGETTTTTT
TTATTTTTTDGIITEPKKETKEEKKIRKEKQKIQEDLQKRKGLAEDFLQNVIMFSTNKLM
CGMTEDQVIRKELIHRLCLGDNTHSQ


Homology Contig-U10709-1 vs CSM-Contig

<more CONTIG info> 
Sequences producing significant alignments:                        (bits)  Value


Contig-U10709-1 (Contig-U10709-1Q) /CSM_Contig/Conti...  1976  0.0
Contig-U14656-1 (Contig-U14656-1Q) /CSM_Contig/Conti...    42  0.001
Contig-U14519-1 (Contig-U14519-1Q) /CSM_Contig/Conti...    42  0.001
Contig-U11441-1 (Contig-U11441-1Q) /CSM_Contig/Conti...    42  0.001
Contig-U02520-1 (Contig-U02520-1Q) /CSM_Contig/Conti...    42  0.001
Contig-U13956-1 (Contig-U13956-1Q) /CSM_Contig/Conti...    40  0.006
Contig-U12838-1 (Contig-U12838-1Q) /CSM_Contig/Conti...    40  0.006
Contig-U12770-1 (Contig-U12770-1Q) /CSM_Contig/Conti...    40  0.006
Contig-U12008-1 (Contig-U12008-1Q) /CSM_Contig/Conti...    40  0.006
Contig-U11408-1 (Contig-U11408-1Q) /CSM_Contig/Conti...    40  0.006


Homology Contig-U10709-1 vs DNA

<more DNA info> 
Sequences producing significant alignments:                  (bits) Value  N


(BJ325789) Dictyostelium discoideum cDNA clone:dda2d09, 5' e...  1227   0.0    1
(BJ333483) Dictyostelium discoideum cDNA clone:dda42l23, 5' ...   789   0.0    2
(BJ340478) Dictyostelium discoideum cDNA clone:dda2d09, 3' e...   634   e-177  1
(GR579757) CBZY2298.b1 CBZY Dictyostelium purpureum 18 hr st...    38   2e-04  3
(AC179233) Strongylocentrotus purpuratus clone R3-1106L24, W...    46   7e-04  2
(AP006309) Homo sapiens genomic DNA, chromosome 3 clone:RP11...    46   0.003  2
(FB571369) Sequence 236 from Patent EP1865317.                     46   0.003  2
(FB571313) Sequence 180 from Patent EP1865317.                     46   0.003  2
(FB571266) Sequence 133 from Patent EP1865317.                     46   0.003  2
(DH480527) Monosiga ovata DNA, fosmid clone: MOF-033G07, gen...    46   0.003  2


Homology Contig-U10709-1 vs Protein

<more Protein info> 
Sequences producing significant alignments:                      (bits) Value


DQ924536_1(DQ924536|pid:none) Mus musculus ubiquitin ligase (Ubr...    40   0.13
(Q5U430) RecName: Full=E3 ubiquitin-protein ligase UBR3;        ...    40   0.13
(Q6ZT12) RecName: Full=E3 ubiquitin-protein ligase UBR3;        ...    40   0.13
AY094815_1(AY094815|pid:none) Drosophila melanogaster LD31957 fu...    38   0.85
(O70481) RecName: Full=E3 ubiquitin-protein ligase UBR1;        ...    35   5.5
AL844548_1(AL844548|pid:none) Mouse DNA sequence from clone RP23...    35   5.5
AK166885_1(AK166885|pid:none) Mus musculus blastocyst blastocyst...    35   5.5
BC090969_1(BC090969|pid:none) Mus musculus ubiquitin protein lig...    35   5.5
CP000682_2155(CP000682|pid:none) Metallosphaera sedula DSM 5348,...    34   9.4


<Clone: Contig-U10709-1> <SEQ> <Translated> <CONTIG> <DNA> <Protein> <PSORT> <MOTIF>

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