Homology Contig-U10700-1 vs DNA
Query= Contig-U10700-1 (Contig-U10700-1Q) /CSM_Contig/Contig-U10700-1Q.Seq.d
(1114 letters)
Database: ddbj_A
108,600,042 sequences; 106,710,029,556 total letters
Searching..................................................done
Score E
Sequences producing significant alignments: (bits) Value N
(AF151733) Dictyostelium discoideum F-Box A protein (fbxA) g... 1386 0.0 2
(AF151112) Dictyostelium discoideum cheater ChtA (cht) mRNA,... 1386 0.0 2
(AF151111) Dictyostelium discoideum cheater ChtA (chtA) gene... 1386 0.0 2
(BJ365622) Dictyostelium discoideum cDNA clone:ddc36b06, 5' ... 1185 0.0 1
(BJ343053) Dictyostelium discoideum cDNA clone:dda1h24, 3' e... 999 0.0 1
(BJ325657) Dictyostelium discoideum cDNA clone:dda1h24, 5' e... 761 0.0 1
(GR567049) CBTF2799.g1 CBTF Dictyostelium purpureum 12 hr ve... 143 2e-33 2
(GR568707) CBTF4063.b1 CBTF Dictyostelium purpureum 12 hr ve... 82 3e-33 3
(AC114063) Rattus norvegicus clone CH230-198N1, WORKING DRAF... 38 0.070 5
(AE013218) Buchnera aphidicola str. Sg (Schizaphis graminum)... 40 0.10 14
(CP000102) Methanosphaera stadtmanae DSM 3091, complete genome. 48 0.70 19
(CG026665) PGAAD26TR PGAA Carica papaya genomic clone PGAAD2... 42 0.72 2
(AL607132) Mouse DNA sequence from clone RP23-97J2 on chromo... 48 0.77 1
(GN008124) Sequence 565 from Patent EP2014669. 48 0.77 1
(FI597057) CH232-001N01.S6Wu CHORI-232 Microtus ochrogaster ... 48 0.77 1
(FI596783) CH232-001H03.S6Wu CHORI-232 Microtus ochrogaster ... 48 0.77 1
(CC866502) NDL.99C20.T7 Notre Dame Liverpool Aedes aegypti g... 48 0.77 1
(AC079859) Homo sapiens chromosome 4 clone RP11-651A8, WORKI... 38 1.4 11
(AC202606) Macaca mulatta clone CH250-3N18, WORKING DRAFT SE... 42 1.5 6
(CT573495) Zebrafish DNA sequence from clone DKEY-29J19 in l... 34 1.6 2
(AC212512) Macaca mulatta BAC CH250-350L8 (Children's Hospi... 42 1.8 6
(AC172837) Bos taurus clone CH240-269G18, WORKING DRAFT SEQU... 40 2.0 4
(AC174977) Bos taurus clone CH240-169J5, WORKING DRAFT SEQUE... 38 2.7 7
(AC168270) Mus musculus BAC clone RP23-173C15 from chromosom... 46 3.0 1
(CQ613712) Sequence 41470 from Patent WO0171042. 46 3.0 1
(FN357549) Schistosoma mansoni genome sequence supercontig S... 46 3.0 1
(AY435097) Cornuspira antarctica 18S ribosomal RNA gene, par... 46 3.0 1
(AE014296) Drosophila melanogaster chromosome 3L, complete s... 46 3.0 1
(AC009384) Drosophila melanogaster 3L BAC RP98-10L1 (Roswell... 46 3.0 1
(AC009383) Drosophila melanogaster 3L BAC RP98-31C3 (Roswell... 46 3.0 1
(AC162188) Bos taurus clone CH240-116P1, WORKING DRAFT SEQUE... 46 3.0 1
(AC212373) Pongo abelii chromosome 1 clone CH276-420F4, WORK... 46 3.0 1
(AC181511) Strongylocentrotus purpuratus clone R3-1111C1, WO... 46 3.0 1
(AC015230) Drosophila melanogaster, *** SEQUENCING IN PROGRE... 46 3.0 1
(FI482476) CH322-79B08.y CHORI-322 Drosophila melanogaster g... 46 3.0 1
(ER617315) 1093017297854 Global-Ocean-Sampling_GS-36-01-01-2... 46 3.0 1
(EK226384) 1095460160601 Global-Ocean-Sampling_GS-31-01-01-1... 46 3.0 1
(EJ570561) 1092960036049 Global-Ocean-Sampling_GS-29-01-01-1... 46 3.0 1
(EJ544752) 1092956076094 Global-Ocean-Sampling_GS-29-01-01-1... 46 3.0 1
(EJ291999) 1095386003812 Global-Ocean-Sampling_GS-27-01-01-1... 46 3.0 1
(CK002370) AGENCOURT_16387220 NIH_MGC_227 Homo sapiens cDNA ... 46 3.0 1
(AC146705) Medicago truncatula clone mth2-101f3, complete se... 36 3.5 6
(AC172022) Bos taurus clone CH240-268O17, WORKING DRAFT SEQU... 38 4.6 4
(AC133796) Homo sapiens 3 BAC RP11-10I2 (Roswell Park Cancer... 44 5.1 3
(AC187128) Callithrix jacchus chromosome UNK clone CH259-94H... 34 5.6 2
(AC178238) Strongylocentrotus purpuratus clone R3-3086D15, W... 38 5.8 6
(AC128521) Rattus norvegicus clone CH230-29N17, *** SEQUENCI... 36 6.4 6
(BJ411648) Dictyostelium discoideum cDNA clone:ddv5b09, 5' e... 32 7.4 3
(EK328158) 1095467014340 Global-Ocean-Sampling_GS-31-01-01-1... 36 7.5 3
(EK415829) 1095515462620 Global-Ocean-Sampling_GS-31-01-01-1... 34 7.6 2
(CB073453) taa17h02.x1 Hydra EST -II Hydra magnipapillata cD... 32 8.1 3
(CN769740) taf33b10.y1 Hydra EST Darmstadt I Hydra magnipapi... 32 8.2 3
(CN553724) tae27h06.y1 Hydra EST Darmstadt I Hydra magnipapi... 32 8.3 3
(CO538097) tah83e08.x1 Hydra EST UCI 5 Hydra magnipapillata ... 32 8.8 3
(BJ659348) Eptatretus burgeri leukocyte cDNA clone:hg110j04,... 38 8.8 2
(CD680629) tac17f02.x1 Hydra EST -III Hydra magnipapillata c... 32 8.8 3
(BU005087) QGG7B06.yg.ab1 QG_EFGHJ lettuce serriola Lactuca ... 36 8.9 2
(AC165313) Mus musculus chromosome 5, clone RP24-294J23, com... 40 9.0 5
(DW162900) CLVY1486.b1_L12.ab1 CLV(XYZ) lettuce virosa Lactu... 36 9.1 2
(ET972486) CHO_OF347xb16f1.ab1 CHO_OF Nicotiana tabacum geno... 36 9.2 2
(CB072653) taa26a06.x1 Hydra EST -II Hydra magnipapillata cD... 32 9.2 3
(DY979486) CLSS13170.b1_D05.ab1 CLS(LMS) lettuce sativa Lact... 36 9.5 2
(CB073490) taa19e08.x1 Hydra EST -II Hydra magnipapillata cD... 32 9.6 3
(CV564737) taj87f03.x1 Hydra EST UCI 6 Hydra magnipapillata ... 32 9.6 3
>(AF151733) Dictyostelium discoideum F-Box A protein (fbxA) gene,
complete cds.
Length = 3885
Score = 1386 bits (699), Expect(2) = 0.0
Identities = 699/699 (100%)
Strand = Plus / Plus
Query: 398 ttatggaaaaagcagaaaaggaggtaaatgaaatgtttggtacaaccaatccagactatg 457
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 857 ttatggaaaaagcagaaaaggaggtaaatgaaatgtttggtacaaccaatccagactatg 916
Query: 458 gttggaaaatttatttaaagaaattggatatggaaattctaattaaaaagacaacctctg 517
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 917 gttggaaaatttatttaaagaaattggatatggaaattctaattaaaaagacaacctctg 976
Query: 518 gttactatatgattggtaagggtagtttttcttcgaggtattcaccagagttattggctg 577
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 977 gttactatatgattggtaagggtagtttttcttcgaggtattcaccagagttattggctg 1036
Query: 578 atgtactctatcagaagaatcctttcgaatgggatactttttatgataaaactaaattgg 637
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 1037 atgtactctatcagaagaatcctttcgaatgggatactttttatgataaaactaaattgg 1096
Query: 638 ttgaaagtatcaatagttcaatcagagaggtcgaggttcattatagaatgtggagaaata 697
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 1097 ttgaaagtatcaatagttcaatcagagaggtcgaggttcattatagaatgtggagaaata 1156
Query: 698 caatcaccatgagattgctacaatccgttaaaaaaggacctggtaatttctcatcggtac 757
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 1157 caatcaccatgagattgctacaatccgttaaaaaaggacctggtaatttctcatcggtac 1216
Query: 758 attggagaagtatttgttctccaaattatcaagtggctgatggtatcgaagtacattatc 817
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 1217 attggagaagtatttgttctccaaattatcaagtggctgatggtatcgaagtacattatc 1276
Query: 818 ttcctactgcactcttaaactatggtttaggtgatggtagtttcacaagtttcttggcgg 877
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 1277 ttcctactgcactcttaaactatggtttaggtgatggtagtttcacaagtttcttggcgg 1336
Query: 878 caatcgaggttaaaggttatccaactccttgggaggaagagatggtaactaaaatgtttg 937
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 1337 caatcgaggttaaaggttatccaactccttgggaggaagagatggtaactaaaatgtttg 1396
Query: 938 ctgctagaatcatttcaaatcaaaatagtatcataaatcatgtaaataaattaacaggtg 997
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 1397 ctgctagaatcatttcaaatcaaaatagtatcataaatcatgtaaataaattaacaggtg 1456
Query: 998 gttcagagatgataagagaattacctgttattccttcagttcaacatcattgtggtgatg 1057
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 1457 gttcagagatgataagagaattacctgttattccttcagttcaacatcattgtggtgatg 1516
Query: 1058 ttggttctcatattggtactcctcaagtctataatgcaa 1096
|||||||||||||||||||||||||||||||||||||||
Sbjct: 1517 ttggttctcatattggtactcctcaagtctataatgcaa 1555
Score = 36.2 bits (18), Expect(2) = 0.0
Identities = 18/18 (100%)
Strand = Plus / Plus
Query: 1097 ggtcgaaaattttgctga 1114
||||||||||||||||||
Sbjct: 1557 ggtcgaaaattttgctga 1574
Score = 325 bits (164), Expect(3) = 0.0
Identities = 164/164 (100%)
Strand = Plus / Plus
Query: 18 aagtcaaagtattcatgaagttttagaacttgcattttcaacaaaaatcccatggacaaa 77
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 30 aagtcaaagtattcatgaagttttagaacttgcattttcaacaaaaatcccatggacaaa 89
Query: 78 attagaatatgaatcaagtgaaaaacatataatacattcctattcatcacatgaaagagg 137
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 90 attagaatatgaatcaagtgaaaaacatataatacattcctattcatcacatgaaagagg 149
Query: 138 tatttatttaagtaaaggtgttgcagaatttaatatttcaccag 181
||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 150 tatttatttaagtaaaggtgttgcagaatttaatatttcaccag 193
Score = 317 bits (160), Expect(3) = 0.0
Identities = 160/160 (100%)
Strand = Plus / Plus
Query: 228 tgggattttcattgtagagaagcacatattattgaagaatatgatcatttaaatcatatt 287
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 379 tgggattttcattgtagagaagcacatattattgaagaatatgatcatttaaatcatatt 438
Query: 288 attcatttaaattttacaaatccattaattagtaatttggatatgaatttatatagaagt 347
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 439 attcatttaaattttacaaatccattaattagtaatttggatatgaatttatatagaagt 498
Query: 348 tgtaagtatgatccacaagagagattatttgtaattgcta 387
||||||||||||||||||||||||||||||||||||||||
Sbjct: 499 tgtaagtatgatccacaagagagattatttgtaattgcta 538
Score = 75.8 bits (38), Expect(3) = 0.0
Identities = 38/38 (100%)
Strand = Plus / Plus
Query: 182 gaaaatatgtatgaacttttattggatatttcttcaag 219
||||||||||||||||||||||||||||||||||||||
Sbjct: 193 gaaaatatgtatgaacttttattggatatttcttcaag 230
Lambda K H
1.37 0.711 1.31
Matrix: blastn matrix:1 -3
Number of Sequences: 108600042
Number of Hits to DB: 1,549,044,758
Number of extensions: 91756940
Number of successful extensions: 7890533
Number of sequences better than 10.0: 64
Length of query: 1114
Length of database: 106,710,029,556
Length adjustment: 24
Effective length of query: 1090
Effective length of database: 104,103,628,548
Effective search space: 113472955117320
Effective search space used: 113472955117320
X1: 11 (21.8 bits)
S2: 22 (44.1 bits)
Dictyostelium discoideum cDNA Project Home