Homology Contig-U10631-1 vs Protein

Query= Contig-U10631-1 (Contig-U10631-1Q) /CSM_Contig/Contig-U10631-1Q.Seq.d
         (700 letters)

Database: nrp_A
           3,204,285 sequences; 1,040,966,779 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

BT046613_1(BT046613|pid:none) Salmo salar clone ssal-eve-556-024...    55   2e-06
BT046785_1(BT046785|pid:none) Salmo salar clone ssal-rgb2-598-38...    52   2e-05
(Q5PPS7) RecName: Full=Transmembrane protein 53-A;  &BC087518_1(...    50   7e-05
(Q6DJC8) RecName: Full=Transmembrane protein 53-B;  &BC075254_1(...    49   2e-04
AK099901_1(AK099901|pid:none) Oryza sativa Japonica Group cDNA c...    49   2e-04
CP000581_317(CP000581|pid:none) Ostreococcus lucimarinus CCE9901...    48   3e-04
AY089637_1(AY089637|pid:none) Drosophila melanogaster RE54285 fu...    47   4e-04
AF098993_5(AF098993|pid:none) Caenorhabditis elegans cosmid T10B...    47   4e-04
BT048639_1(BT048639|pid:none) Salmo salar clone ssal-evf-540-213...    45   0.002
AF279808_7(AF279808|pid:none) Penicillium paxilli aromatic preny...    45   0.003
AM270303_33(AM270303|pid:none) Aspergillus niger contig An13c009...    44   0.006
AL122004_8(AL122004|pid:none) Human DNA sequence from clone RP4-...    43   0.011
AC116986_56(AC116986|pid:none) Dictyostelium discoideum chromoso...    43   0.011
AK026006_1(AK026006|pid:none) Homo sapiens cDNA: FLJ22353 fis, c...    43   0.011
AP002050_2(AP002050|pid:none) Arabidopsis thaliana genomic DNA, ...    43   0.011
(Q6P2H8) RecName: Full=Transmembrane protein 53;  &AL122004_9(AL...    43   0.011
(Q2TBP5) RecName: Full=Transmembrane protein 53;  &BC109854_1(BC...    42   0.024
BT062986_1(BT062986|pid:none) Zea mays full-length cDNA clone ZM...    40   0.090
EU955791_1(EU955791|pid:none) Zea mays clone 1546337 hypothetica...    39   0.12
CU633446_22(CU633446|pid:none) Podospora anserina genomic DNA ch...    39   0.20
U29612_3(U29612|pid:none) Caenorhabditis elegans cosmid C09B8, c...    38   0.26
T15463(T15463)hypothetical protein C09B8.4 - Caenorhabditis eleg...    38   0.34
AM920428_419(AM920428|pid:none) Penicillium chrysogenum Wisconsi...    36   0.99
BT033413_1(BT033413|pid:none) Zea mays full-length cDNA clone ZM...    35   1.7
AL844506_99(AL844506|pid:none) Plasmodium falciparum 3D7 chromos...    34   4.9
AY084460_1(AY084460|pid:none) Arabidopsis thaliana clone 108694 ...    33   6.4
CP000123_313(CP000123|pid:none) Mycoplasma capricolum subsp. cap...    33   6.4
CP001393_611(CP001393|pid:none) Anaerocellum thermophilum DSM 67...    33   8.4

>BT046613_1(BT046613|pid:none) Salmo salar clone ssal-eve-556-024
           Transmembrane protein 53 putative mRNA, complete cds.
          Length = 284

 Score = 55.5 bits (132), Expect = 2e-06
 Identities = 47/198 (23%), Positives = 78/198 (39%), Gaps = 13/198 (6%)
 Frame = +2

Query: 68  IQNKGDEMLEQIKKYLKENRNCKSVIFNAFSNGGGFYYAHMIRQIHEREDCKWMAPLVKG 247
           + N   ++LE +  Y  EN     + F+ FSNGG   Y +++  +H  +    +   + G
Sbjct: 78  LSNTAHKLLEILYDYEVEN---SPIFFHVFSNGGFMLYRYIVELLHSHKQFSTLC--IVG 132

Query: 248 TVLDSLP-------AIRPLS------IYSAFRLTSPNMXXXXXXXXXXXXXXXXXWSKMS 388
           TV+DS P       A+R L+      I    R     +                 +   +
Sbjct: 133 TVVDSAPGSGNVRGALRALTATLGPKINVMLRCVLLALFAVTVFLLRVVLYPITKYIHKN 192

Query: 389 SYQQILTSKKNQWQHLIFYSKADTIVHSDDIDNLVGKIKNNLSDVNHLDYKCFDDSPHVL 568
            Y  I   +   W  L  YS+AD ++   D++ +V  +K     V   D+K      HV
Sbjct: 193 HYDAI-RERPPTWPQLYLYSRADRVIRYSDVELMVKTLKEKGVSVESFDFK---TPAHVS 248

Query: 569 HMRSHPKIYEDKLNHFVT 622
           H R  P+ Y  +   F+T
Sbjct: 249 HFRDFPEEYSKRCLDFLT 266

Lambda     K      H
   0.318    0.134    0.401

Gapped
Lambda     K      H
   0.267   0.0410    0.140

Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Sequences: 3204285
Number of Hits to DB: 1,009,170,960
Number of extensions: 19086714
Number of successful extensions: 45954
Number of sequences better than 10.0: 28
Number of HSP's gapped: 45916
Number of HSP's successfully gapped: 32
Length of query: 233
Length of database: 1,040,966,779
Length adjustment: 124
Effective length of query: 109
Effective length of database: 643,635,439
Effective search space: 70156262851
Effective search space used: 70156262851
Neighboring words threshold: 12
Window for multiple hits: 40
X1: 16 ( 7.3 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 41 (21.7 bits)
S2: 31 (16.5 bits)