Dictyostelium discoideum cDNA Contig-U10631-1

Assembled

Chromosomal Location of Contig-U10631-1

Sequence Contig-U10631-1

AGAAAANGTG GTTTCAATAC ATTTTCATTT TGTTCAAAAC CCAATTCAAT
TATTGGTTCC AGGAGTAATT CAAAATAAAG GTGATGAAAT GTTAGAACAA
ATTAAAAAAT ATTTAAAAGA GAATAGAAAT TGTAAAAGTG TAATATTTAA
TGCATTTTCA AATGGTGGTG GATTTTATTA TGCACATATG ATTCGTCAAA
TTCATGAAAG AGAGGATTGC AAGTGGATGG CTCCTTTGGT AAAGGGAACT
GTGTTGGATT CGTTGCCTGC AATTAGACCA TTATCCATCT ATTCAGCATT
CCGTTTAACT AGTCCAAATA TGTTTGTAAC TTTCTTATTA GCATTGGTAG
TACCATTATT TGTAGTTTTA TTTTGGAGTA AGATGTCATC GTATCAACAA
ATTTTAACCT CAAAAAAGAA TCAATGGCAA CATTTAATTT TCTATTCAAA
AGCTGATACT ATAGTTCATT CTGATGATAT CGATAATTTA GTTGGTAAAA
TAAAGAATAA TTTATCAGAT GTCAATCATC TAGATTATAA ATGTTTCGAC
GATTCACCAC ATGTTCTCCA TATGAGATCA CATCCAAAAA TATATGAAGA
TAAATTAAAT CATTTCGTTA CTTCAATTAA AAATTCAAAT TTGAAAAAAT
TACAAAATAA ATAAATAAAA AAAAAAAGTG TATAATTACA ATAAAAACAG

Translated Amino Acid Sequence Contig-U10631-1

EXVVSIHFHFVQNPIQLLVPGVIQNKGDEMLEQIKKYLKENRNCKSVIFNAFSNGGGFYY
AHMIRQIHEREDCKWMAPLVKGTVLDSLPAIRPLSIYSAFRLTSPNMFVTFLLALVVPLF
VVLFWSKMSSYQQILTSKKNQWQHLIFYSKADTIVHSDDIDNLVGKIKNNLSDVNHLDYK
CFDDSPHVLHMRSHPKIYEDKLNHFVTSIKNSNLKKLQNK*ikkksv*lq*kq

Homology Contig-U10631-1 vs CSM-Contig

Sequences producing significant alignments:                        (bits)  Value


Contig-U10631-1 (Contig-U10631-1Q) /CSM_Contig/Conti...  1231  0.0
Contig-U05987-1 (Contig-U05987-1Q) /CSM_Contig/Conti...    44  2e-04
Contig-U11879-1 (Contig-U11879-1Q) /CSM_Contig/Conti...    42  8e-04
Contig-U12701-1 (Contig-U12701-1Q) /CSM_Contig/Conti...    38  0.012
Contig-U11473-1 (Contig-U11473-1Q) /CSM_Contig/Conti...    38  0.012
Contig-U13633-1 (Contig-U13633-1Q) /CSM_Contig/Conti...    36  0.049
Contig-U08767-1 (Contig-U08767-1Q) /CSM_Contig/Conti...    36  0.049
Contig-U12241-1 (Contig-U12241-1Q) /CSM_Contig/Conti...    34  0.19
Contig-U11912-1 (Contig-U11912-1Q) /CSM_Contig/Conti...    34  0.19
Contig-U11197-1 (Contig-U11197-1Q) /CSM_Contig/Conti...    34  0.19

Homology Contig-U10631-1 vs DNA

Sequences producing significant alignments:                  (bits) Value  N


(AU269033) Dictyostelium discoideum vegetative cDNA clone:VS...  1015   0.0    2
(AU261814) Dictyostelium discoideum vegetative cDNA clone:VS...   954   0.0    2
(BJ433421) Dictyostelium discoideum cDNA clone:ddv21f19, 3' ...   642   e-180  1
(BJ411158) Dictyostelium discoideum cDNA clone:ddv3a08, 5' e...    44   3e-04  3
(BJ429359) Dictyostelium discoideum cDNA clone:ddv3a08, 3' e...    44   5e-04  3
(AC129751) Rattus norvegicus clone CH230-22G16, WORKING DRAF...    38   0.005  2
(AC094840) Rattus norvegicus clone CH230-6B2, WORKING DRAFT ...    38   0.005  2
(AC134654) Rattus norvegicus clone CH230-49M11, *** SEQUENCI...    38   0.005  2
(DW577452) EST_ssal_rgb2_41871 rgb2 Salmo salar cDNA clone s...    50   0.12   1
(AZ681177) ENTMR45TR Entamoeba histolytica Sheared DNA Entam...    38   0.35   2

Homology Contig-U10631-1 vs Protein

Sequences producing significant alignments:                      (bits) Value


BT046613_1(BT046613|pid:none) Salmo salar clone ssal-eve-556-024...    55   2e-06
BT046785_1(BT046785|pid:none) Salmo salar clone ssal-rgb2-598-38...    52   2e-05
(Q5PPS7) RecName: Full=Transmembrane protein 53-A;  &BC087518_1(...    50   7e-05
(Q6DJC8) RecName: Full=Transmembrane protein 53-B;  &BC075254_1(...    49   2e-04
AK099901_1(AK099901|pid:none) Oryza sativa Japonica Group cDNA c...    49   2e-04
CP000581_317(CP000581|pid:none) Ostreococcus lucimarinus CCE9901...    48   3e-04
AY089637_1(AY089637|pid:none) Drosophila melanogaster RE54285 fu...    47   4e-04
AF098993_5(AF098993|pid:none) Caenorhabditis elegans cosmid T10B...    47   4e-04
BT048639_1(BT048639|pid:none) Salmo salar clone ssal-evf-540-213...    45   0.002
AF279808_7(AF279808|pid:none) Penicillium paxilli aromatic preny...    45   0.003