Dictyostelium discoideum cDNA Contig-U10621-1

Assembled

Chromosomal Location of Contig-U10621-1

Sequence Contig-U10621-1

GGTACAACCT ATACAAATGG TAAACCATCT TCAAAACCAT GGCTTAACCA
ATTGCAATAT GATGTTGGCT TCACTTCAGT TGAGGAACCA TCATTTAGCT
ATGAAAATTA CAAAGGTGCC TATTTACCAT TATCATCATC AGCAGCCACA
ATTACTTTAA CTCCAACTAT TAATATCAAC TATTTACCAA CTGTTTATTA
TACAACTAGT GGTGGTGCAA CTTATTCAAT GATATTTAAA ATATCGAATC
AACATGACTC AATGAGTGGA TATTCAAATG TTTTCTCTGA AACTTCAAAT
TCAATCACAT TATCAAGTGG AGATGGTAAA AACTCTTTAA TGGTTATTAG
TTTATCTGAT ATCTATAGTT TTGATCAAAC AACCGCACCA AATCATGCTT
ATCTTTCATT GCTACCAAAT CCAGGTTCTT CTTTAATAAG CAATTATGAT
TCAGATTCTT TATATGTTTC AGTTAATATA CCATCAATCT ATAGTACAAA
CAATCAAAAT CCATATACAA TTCAATTGAA TATCAATGTT TATGATATTG
ATACATCATC TCATTCTAAA CTTCCAAAAT GGGCTCTTGG TCTAATTGTA
GGTTTCTCTG TATTCATCGG TATTGTAATT ATTTTCATTA TAGCTAAATA
CATTAAAACA AAACGTCATA ATTATTCAAG AATAAATNAT CATCATCATC
AGGCCATTAT TAAATAAATT AAAATTTC

Translated Amino Acid Sequence Contig-U10621-1

GTTYTNGKPSSKPWLNQLQYDVGFTSVEEPSFSYENYKGAYLPLSSSAATITLTPTININ
YLPTVYYTTSGGATYSMIFKISNQHDSMSGYSNVFSETSNSITLSSGDGKNSLMVISLSD
IYSFDQTTAPNHAYLSLLPNPGSSLISNYDSDSLYVSVNIPSIYSTNNQNPYTIQLNINV
YDIDTSSHSKLPKWALGLIVGFSVFIGIVIIFIIAKYIKTKRHNYSRINXHHHQAIIK*i
ki

Homology Contig-U10621-1 vs CSM-Contig

Sequences producing significant alignments:                        (bits)  Value


Contig-U10621-1 (Contig-U10621-1Q) /CSM_Contig/Conti...  1437  0.0
Contig-U09061-1 (Contig-U09061-1Q) /CSM_Contig/Conti...    60  4e-09
Contig-U08850-1 (Contig-U08850-1Q) /CSM_Contig/Conti...    42  8e-04
Contig-U12006-1 (Contig-U12006-1Q) /CSM_Contig/Conti...    38  0.013
Contig-U11111-1 (Contig-U11111-1Q) /CSM_Contig/Conti...    38  0.013
Contig-U09143-1 (Contig-U09143-1Q) /CSM_Contig/Conti...    38  0.013
Contig-U06364-1 (Contig-U06364-1Q) /CSM_Contig/Conti...    38  0.013
Contig-U04625-1 (Contig-U04625-1Q) /CSM_Contig/Conti...    38  0.013
Contig-U02425-1 (Contig-U02425-1Q) /CSM_Contig/Conti...    38  0.013
Contig-U11739-1 (Contig-U11739-1Q) /CSM_Contig/Conti...    36  0.051

Homology Contig-U10621-1 vs DNA

Sequences producing significant alignments:                  (bits) Value  N


(BJ432694) Dictyostelium discoideum cDNA clone:ddv19p07, 3' ...  1429   0.0    1
(BJ432717) Dictyostelium discoideum cDNA clone:ddv19d16, 3' ...  1352   0.0    1
(BJ434032) Dictyostelium discoideum cDNA clone:ddv23o14, 3' ...  1144   0.0    2
(AU266675) Dictyostelium discoideum vegetative cDNA clone:VS...  1005   0.0    1
(BJ402378) Dictyostelium discoideum cDNA clone:dds16i18, 3' ...    60   3e-24  5
(EJ691421) 1092956004546 Global-Ocean-Sampling_GS-30-02-01-1...    40   0.095  2
(AF063866) Melanoplus sanguinipes entomopoxvirus, complete g...    36   0.14   10
(CP000976) Borrelia duttonii Ly, complete genome.                  40   0.28   10
(ED635464) GM_WBa0041K04.f GM_WBa Glycine max genomic clone ...    44   0.32   2
(EJ390331) 1092963915192 Global-Ocean-Sampling_GS-28-01-01-1...    40   0.33   2

Homology Contig-U10621-1 vs Protein

Sequences producing significant alignments:                      (bits) Value


CR380949_4(CR380949|pid:none) Candida glabrata strain CBS138 chr...    42   0.025
BC153877_1(BC153877|pid:none) Danio rerio zgc:165539, mRNA (cDNA...    39   0.13
AY960620_1(AY960620|pid:none) Phragmatopoma californica cement p...    39   0.13
(Q54B29) RecName: Full=Uncharacterized membrane protein DDB_G029...    39   0.16
FN357716_11(FN357716|pid:none) Schistosoma mansoni genome sequen...    39   0.16
CP000716_1463(CP000716|pid:none) Thermosipho melanesiensis BI429...    39   0.21
AY170879_1(AY170879|pid:none) Candida albicans isolate AU90 ALS7...    38   0.28
AE014298_2371(AE014298|pid:none) Drosophila melanogaster chromos...    38   0.28
AE014187_245(AE014187|pid:none) Plasmodium falciparum 3D7 chromo...    38   0.36
AY170876_1(AY170876|pid:none) Candida albicans isolate RIHO13 AL...    37   0.48