Homology Contig-U10512-1 vs DNA
Query= Contig-U10512-1 (Contig-U10512-1Q) /CSM_Contig/Contig-U10512-1Q.Seq.d
(664 letters)
Database: ddbj_A
108,600,042 sequences; 106,710,029,556 total letters
Searching..................................................done
Score E
Sequences producing significant alignments: (bits) Value N
(BJ435672) Dictyostelium discoideum cDNA clone:ddv27i19, 3' ... 440 0.0 2
(AC127773) Rattus norvegicus clone CH230-92I3, *** SEQUENCIN... 54 0.007 1
(AC096429) Rattus norvegicus clone CH230-160A18, *** SEQUENC... 54 0.007 1
(AV676938) Ciona intestinalis cDNA clone:rcitb2i14 : 3' end,... 52 0.029 1
(BW499543) Ciona intestinalis cDNA, clone:cima049o24, 3'end,... 52 0.029 1
(BW493785) Ciona intestinalis cDNA, clone:cima037m08, 3'end,... 52 0.029 1
(BW404062) Ciona intestinalis cDNA, clone:ciem844e07, 3'end,... 52 0.029 1
(BW401339) Ciona intestinalis cDNA, clone:ciem836c22, 3'end,... 52 0.029 1
(BW398850) Ciona intestinalis cDNA, clone:ciem828h20, 3'end,... 52 0.029 1
(BW398139) Ciona intestinalis cDNA, clone:ciem826f06, 3'end,... 52 0.029 1
(BW397499) Ciona intestinalis cDNA, clone:ciem824g04, 3'end,... 52 0.029 1
(BW393570) Ciona intestinalis cDNA, clone:ciem812f11, 3'end,... 52 0.029 1
(BW390448) Ciona intestinalis cDNA, clone:ciem802k06, 3'end,... 52 0.029 1
(BW154910) Ciona intestinalis cDNA, clone:rcigd024p01, 3' en... 52 0.029 1
(BW130611) Ciona intestinalis cDNA, clone:rcign024m02, 3' en... 52 0.029 1
(BW112054) Ciona intestinalis cDNA, clone:rcitb104c24, 3' en... 52 0.029 1
(BW110506) Ciona intestinalis cDNA, clone:rcieg094d20, 3' en... 52 0.029 1
(BW105017) Ciona intestinalis cDNA, clone:rcicl104l08, 3' en... 52 0.029 1
(BW091675) Ciona intestinalis cDNA, clone:rciad101i04, 3' en... 52 0.029 1
(BW082404) Ciona intestinalis cDNA, clone:rcieg088h21, 3' en... 52 0.029 1
(BW074464) Ciona intestinalis cDNA, clone:rcieg062m21, 3' en... 52 0.029 1
(BW073834) Ciona intestinalis cDNA, clone:rcieg060l17, 3' en... 52 0.029 1
(BW072995) Ciona intestinalis cDNA, clone:rcieg101b09, 3' en... 52 0.029 1
(FK196890) XABT208991.g1 Gateway compatible cien cDNA librar... 52 0.029 1
(FK190258) XABT204838.g1 Gateway compatible cien cDNA librar... 52 0.029 1
(FK176088) XABT196103.g1 Gateway compatible cien cDNA librar... 52 0.029 1
(FK168062) XABT191231.g1 Gateway compatible cien cDNA librar... 52 0.029 1
(FK143240) XABT175865.g1 Gateway compatible cien cDNA librar... 52 0.029 1
(FK125623) XABT165214.g1 Gateway compatible cien cDNA librar... 52 0.029 1
(FK114473) XABT158455.g1 Gateway compatible cien cDNA librar... 52 0.029 1
(FK113432) XABT157822.g1 Gateway compatible cien cDNA librar... 52 0.029 1
(FK105689) XABT152585.g1 Gateway compatible cien cDNA librar... 52 0.029 1
(FG000701) CBWU116219.g1 Yutaka Satou unpublished cDNA libra... 52 0.029 1
(FF989838) CBWU107305.g1 Yutaka Satou unpublished cDNA libra... 52 0.029 1
(FF955621) CBWU84004.g1 Yutaka Satou unpublished cDNA librar... 52 0.029 1
(FF943494) CBWU76496.g1 Yutaka Satou unpublished cDNA librar... 52 0.029 1
(FF932463) CBWU69242.g1 Yutaka Satou unpublished cDNA librar... 52 0.029 1
(FF897273) CBWU31155.g1 Yutaka Satou unpublished cDNA librar... 52 0.029 1
(FF882010) CBWU21540.g1 Yutaka Satou unpublished cDNA librar... 52 0.029 1
(FF796704) XABT90555.rev Gateway compatible cien cDNA librar... 52 0.029 1
(FF787153) XABT84225.rev Gateway compatible cien cDNA librar... 52 0.029 1
(FF775404) XABT76152.rev Gateway compatible cien cDNA librar... 52 0.029 1
(FF765431) XABT69669.rev Gateway compatible cien cDNA librar... 52 0.029 1
(FF745315) XABT55620.rev Gateway compatible cien cDNA librar... 52 0.029 1
(FF739231) XABT51531.rev Gateway compatible cien cDNA librar... 52 0.029 1
(FF732849) XABT46828.rev Gateway compatible cien cDNA librar... 52 0.029 1
(FF728277) XABT43326.rev Gateway compatible cien cDNA librar... 52 0.029 1
(AV972589) Ciona intestinalis cDNA, clone:cieg34g05, 5' end,... 52 0.029 1
(AV888663) Ciona intestinalis cDNA, clone:rcicl30g12, 3' end... 52 0.029 1
(AV887436) Ciona intestinalis cDNA, clone:rcicl26h14, 3' end... 52 0.029 1
(AV886023) Ciona intestinalis cDNA, clone:rcicl41e14, 3' end... 52 0.029 1
(AV880296) Ciona intestinalis cDNA, clone:rcicl57b08, 3' end... 52 0.029 1
(AV878782) Ciona intestinalis cDNA, clone:rcicl56b01, 3' end... 52 0.029 1
(AV865267) Ciona intestinalis cDNA, clone:rcieg41o13, 3' end... 52 0.029 1
(AC068386) Homo sapiens chromosome 3 clone RP11-603J22 map 3... 46 0.048 3
(FK065596) XABT127241.g1 Gateway compatible cien cDNA librar... 50 0.11 1
(BX293980) Mycoplasma mycoides subsp. mycoides SC str. PG1, ... 32 0.22 11
(CR848687) Zebrafish DNA sequence from clone DKEY-46H11 in l... 48 0.45 1
(AL806515) Mouse DNA sequence from clone RP23-434M18 on chro... 48 0.45 1
(AC130588) Rattus norvegicus clone CH230-332A21, WORKING DRA... 48 0.45 1
(AC122101) Rattus norvegicus clone CH230-506G16, *** SEQUENC... 48 0.45 1
(AC094809) Rattus norvegicus clone CH230-4C12, *** SEQUENCIN... 48 0.45 1
(ET963374) CHO_OF468xf20r1.ab1 CHO_OF Nicotiana tabacum geno... 48 0.45 1
(AZ545471) ENTEM09TF Entamoeba histolytica Sheared DNA Entam... 36 1.1 2
(AC090022) Homo sapiens 12 BAC RP11-154D9 (Roswell Park Canc... 46 1.3 4
(DU293104) 1098421217148 CHORI-243 Ovis aries genomic clone ... 32 1.3 3
(AC024950) Mus musculus strain C57BL6/J chromosome 6 clone R... 46 1.8 1
(AM446013) Vitis vinifera contig VV78X241839.5, whole genome... 46 1.8 1
(AC107030) Homo sapiens 3 BAC RP11-603J22 (Roswell Park Canc... 46 1.8 1
(AC073164) Homo sapiens chromosome 3 clone RP11-359D24, WORK... 46 1.8 1
(AC222585) Bos taurus clone CH240-445B9, WORKING DRAFT SEQUE... 46 1.8 1
(BH087632) RPCI-24-97I18.TVB RPCI-24 Mus musculus genomic cl... 46 1.8 1
(CZ239370) AIAA-aad99c06.b1 Ancylostoma caninum whole genome... 46 1.8 1
(CZ198363) AIAA-aag68c11.g1 Ancylostoma caninum whole genome... 46 1.8 1
(CR745673) RZPD Homo sapiens cDNA clone IMAGp998N171784 = IM... 46 1.8 1
(AC090680) Homo sapiens 12 BAC RP11-87P13 (Roswell Park Canc... 44 2.5 5
(AC107265) Rattus norvegicus clone CH230-26A18, *** SEQUENCI... 34 3.4 2
(AC091412) Rattus norvegicus clone CH230-1J21, *** SEQUENCIN... 34 3.4 2
(AC235809) Solanum lycopersicum chromosome 12 clone LE_HBa-2... 32 3.5 2
(AC212659) Solanum lycopersicum chromosome 7 clone C07SLm013... 32 3.5 2
(AM434223) Vitis vinifera contig VV78X155730.3, whole genome... 32 4.2 2
(AC173394) Bos taurus clone CH240-303K3, WORKING DRAFT SEQUE... 42 6.1 4
(CT030182) Mouse DNA sequence from clone RP23-21N15 on chrom... 44 7.0 1
(AC154595) Mus musculus BAC clone RP23-353D15 from 13, compl... 44 7.0 1
(AY624423) Nomocharis pardanthina ribosomal protein L16 (rpl... 44 7.0 1
(CQ610790) Sequence 38548 from Patent WO0171042. 44 7.0 1
(FN374898) Schistosoma mansoni genome sequence supercontig S... 44 7.0 1
(FN372576) Schistosoma mansoni genome sequence supercontig S... 44 7.0 1
(FN370699) Schistosoma mansoni genome sequence supercontig S... 44 7.0 1
(FN365617) Schistosoma mansoni genome sequence supercontig S... 44 7.0 1
(FN364483) Schistosoma mansoni genome sequence supercontig S... 44 7.0 1
(FN363941) Schistosoma mansoni genome sequence supercontig S... 44 7.0 1
(AE014134) Drosophila melanogaster chromosome 2L, complete s... 44 7.0 1
(AC092231) Drosophila melanogaster, chromosome 2L, region 24... 44 7.0 1
(AC008323) Drosophila melanogaster, chromosome 2L, region 24... 44 7.0 1
(AP005856) Homo sapiens genomic DNA, chromosome 8q24, clone:... 44 7.0 1
(AL355796) Human DNA sequence from clone RP11-46B11 on chrom... 44 7.0 1
(AF130866) Homo sapiens chromosome 8 clone GS1-172N13 map q2... 44 7.0 1
(AC138185) Homo sapiens chromosome 8, clone RP11-640O8, comp... 44 7.0 1
(AC108447) Homo sapiens chromosome 8, clone RP11-1104D13, co... 44 7.0 1
(AC144269) Macaca mulatta clone CH250-271E23, WORKING DRAFT ... 44 7.0 1
(AC106918) Rattus norvegicus clone CH230-60H6, *** SEQUENCIN... 44 7.0 1
(AC095219) Rattus norvegicus clone CH230-9L16, *** SEQUENCIN... 44 7.0 1
(AC094937) Rattus norvegicus clone CH230-6E6, WORKING DRAFT ... 44 7.0 1
(CU640454) Pig DNA sequence *** SEQUENCING IN PROGRESS *** f... 44 7.0 1
(CU570948) Pig DNA sequence *** SEQUENCING IN PROGRESS *** f... 44 7.0 1
(AC068054) Homo sapiens chromosome 12 clone RP11-87P13, WORK... 44 7.0 1
(AC204378) Zea mays chromosome 7 clone CH201-9O22; ZMMBBc000... 44 7.0 1
(AC202258) Ornithorhynchus anatinus clone OA_Bb-184B18, WORK... 44 7.0 1
(AC184730) Atelerix albiventris clone LB4-112B20, WORKING DR... 44 7.0 1
(AC184467) Strongylocentrotus purpuratus clone R3-4001G11, W... 44 7.0 1
(AC020050) Drosophila melanogaster, *** SEQUENCING IN PROGRE... 44 7.0 1
(AC007420) Drosophila melanogaster strain y chromosome 2 clo... 44 7.0 1
(AZ874002) 2M0188A06F Mouse 10kb plasmid UUGC1M library Mus ... 44 7.0 1
(AQ810863) HS_5373_A2_D01_SP6E RPCI-11 Human Male BAC Librar... 44 7.0 1
(AQ762981) HS_3186_A1_G02_MR CIT Approved Human Genomic Sper... 44 7.0 1
(FI237091) CccaBb010-M7JF CccABb Cajanus cajan genomic clone... 44 7.0 1
(EK086293) 1092961152704 Global-Ocean-Sampling_GS-31-01-01-1... 44 7.0 1
(EK011393) 1092955189653 Global-Ocean-Sampling_GS-31-01-01-1... 44 7.0 1
(EJ955792) 1093018972110 Global-Ocean-Sampling_GS-30-02-01-1... 44 7.0 1
(EJ707272) 1092956058016 Global-Ocean-Sampling_GS-30-02-01-1... 44 7.0 1
(EJ661925) 1092955026562 Global-Ocean-Sampling_GS-30-02-01-1... 44 7.0 1
(EJ231497) 1092402617619 Global-Ocean-Sampling_GS-27-01-01-1... 44 7.0 1
(DX989939) CHORI103-10N3.TV CHORI103 Schistosoma mansoni gen... 44 7.0 1
(DX989494) CHORI103-9P8.TV CHORI103 Schistosoma mansoni geno... 44 7.0 1
(CE708323) tigr-gss-dog-17000369282293 Dog Library Canis lup... 44 7.0 1
(EL941352) cavy_005755 cavy eyeball cDNA Library Cavia porce... 44 7.0 1
(DB852145) Nilaparvata lugens mRNA, EST clone:NLMB3836, 5' e... 44 7.0 1
(DB850116) Nilaparvata lugens mRNA, EST clone:NLMA5918, 5' e... 44 7.0 1
(DB847796) Nilaparvata lugens mRNA, EST clone:NLMA1681, 5' e... 44 7.0 1
(DB847440) Nilaparvata lugens mRNA, EST clone:NLMA1094, 5' e... 44 7.0 1
(DB846821) Nilaparvata lugens mRNA, EST clone:NLMA0119, 5' e... 44 7.0 1
(DB337749) Homo sapiens cDNA clone TESTI2026598, 3' end, mRN... 44 7.0 1
(FF940799) CBWU74855.g1 Yutaka Satou unpublished cDNA librar... 44 7.0 1
(CP001055) Elusimicrobium minutum Pei191, complete genome. 44 7.0 1
(CP000312) Clostridium perfringens SM101, complete genome. 44 7.0 1
(CP000246) Clostridium perfringens ATCC 13124, complete genome. 44 7.0 1
(BA000016) Clostridium perfringens str. 13 DNA, complete gen... 44 7.0 1
(AE009951) Fusobacterium nucleatum subsp. nucleatum ATCC 255... 44 7.0 1
(CU862062) Pig DNA sequence *** SEQUENCING IN PROGRESS *** f... 40 7.2 4
(AF386797) Entamoeba histolytica signal recognition particle... 36 7.4 2
(DR462145) CM104H05 Cotton Lambda Zap Express Library Gossyp... 40 8.3 2
(AC133936) Mus musculus BAC clone RP24-399H1 from chromosome... 38 9.7 2
(DT046979) COT_CI_D02 Fiber and Ovule of Xu-142 Lambda Zap E... 40 9.8 2
>(BJ435672) Dictyostelium discoideum cDNA clone:ddv27i19, 3' end,
single read.
Length = 655
Score = 440 bits (222), Expect(2) = 0.0
Identities = 222/222 (100%)
Strand = Plus / Minus
Query: 12 ttaattcattattggcaacttgtgatgcaattaatcaaatcattagtcgtggtgatgtat 71
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 654 ttaattcattattggcaacttgtgatgcaattaatcaaatcattagtcgtggtgatgtat 595
Query: 72 gttgtgaagaggatttcaatctatcagatttcaatctaactttattatatcctgcaaatc 131
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 594 gttgtgaagaggatttcaatctatcagatttcaatctaactttattatatcctgcaaatc 535
Query: 132 aacatatggttgtaaatattagacaattggaagaactaatagatcaattagatcaacaaa 191
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 534 aacatatggttgtaaatattagacaattggaagaactaatagatcaattagatcaacaaa 475
Query: 192 ttacaactgaaaaatcaaaaccaataaaagatttagatgaac 233
||||||||||||||||||||||||||||||||||||||||||
Sbjct: 474 ttacaactgaaaaatcaaaaccaataaaagatttagatgaac 433
Score = 412 bits (208), Expect(2) = 0.0
Identities = 211/211 (100%)
Strand = Plus / Minus
Query: 342 aagagatattaccagttattgaatttttaaagaatgatggantatagtaatagggatgat 401
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 324 aagagatattaccagttattgaatttttaaagaatgatggantatagtaatagggatgat 265
Query: 402 attattgtaccaactgaaatttttaatggtgctttagtttcaaaattatattcatcagtt 461
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 264 attattgtaccaactgaaatttttaatggtgctttagtttcaaaattatattcatcagtt 205
Query: 462 ggtgctgtttctcaagagaaaacatatacagctgcaattagttcatttgaaaaattattt 521
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 204 ggtgctgtttctcaagagaaaacatatacagctgcaattagttcatttgaaaaattattt 145
Query: 522 aatgattttcaaactttatttaaaatgcctc 552
|||||||||||||||||||||||||||||||
Sbjct: 144 aatgattttcaaactttatttaaaatgcctc 114
Lambda K H
1.37 0.711 1.31
Matrix: blastn matrix:1 -3
Number of Sequences: 108600042
Number of Hits to DB: 671,596,471
Number of extensions: 43607687
Number of successful extensions: 3667311
Number of sequences better than 10.0: 145
Length of query: 664
Length of database: 106,710,029,556
Length adjustment: 24
Effective length of query: 640
Effective length of database: 104,103,628,548
Effective search space: 66626322270720
Effective search space used: 66626322270720
X1: 11 (21.8 bits)
S2: 22 (44.1 bits)
Dictyostelium discoideum cDNA Project Home